Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq957 266 8e-69 seq1251 170 5e-40 seq11 165 2e-38 seq421 131 4e-28 seq14 131 4e-28 seq9 131 4e-28 seq438 123 6e-26 seq16 123 6e-26 seq17 114 3e-23 seq7 109 1e-21 seq1149 102 2e-19 seq12 96.9 8e-18 seq2 86.0 2e-14 seq5 84.2 5e-14 >seq957 Length=3583874 Score = 266 bits (294), Expect = 8e-69 Identities = 305/410 (74%), Gaps = 30/410 (7%) Strand=Plus/Minus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 || || ||||| ||||||||| | | |||||||||| ||| | |||||||| |||||||| Sbjct 6050 TTCACGACCCGTAGGCCTTCTACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATT 5991 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 | | || ||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 5990 GCGGAAAWTTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGT 5931 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 ||||| |||||||||| ||||||||| |||| |||||| ||| || ||| || | ||| Sbjct 5930 GGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCACCA 5871 Query 185 ACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGG 244 ||||||||||| | | | | ||| || | || ||| ||| |||| Sbjct 5870 ACTAGCTAATCAGACGCGAGCCCCTCC--------TCGGGCGGA--TTCCTCCT-TTTGC 5822 Query 245 TCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCA 304 || | | | || | ||||||||| |||||||||| ||| | |||| || |||| Sbjct 5821 TCCTCAGCC--TACGGGGTATTAGCAGCCGTTTCCAGCTGTTGTTCCCCYCCCAAGGGCA 5764 Query 305 GTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTG 364 | ||| | | |||||||||||||||||||| ||| || || |||| Sbjct 5763 GGTTCTTACGCGTTACTCACCCGTCCGCCACT------GGAAACACCA-----CTTC--- 5718 Query 365 TTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 |||| |||||||||||||||| || ||||||||||||||| ||||| Sbjct 5717 ---CCGTCCGACTTGCATGTGTTAAGCATGCCGCCAGCGTTCATCCTGAG 5671 >seq1251 Length=396947 Score = 170 bits (188), Expect = 5e-40 Identities = 154/193 (80%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 4 CTTTACAACCCGAA--GGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCC 61 |||||||| | | | | ||||||||| |||||| || |||| ||| ||||| ||||| Sbjct 275772 CTTTACAAGCGGCATTGCCCTTCTTCACTCACGCGATATTGCTGGATCGGGCTTTCGCCC 275713 Query 62 ATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 121 ||||| ||| |||||||||||||||| ||||| |||||| || |||||||||||| |||| Sbjct 275712 ATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCAG 275653 Query 122 TGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCG 181 |||||||| |||||| |||||||||| | ||| | | || ||| ||| ||||| Sbjct 275652 TGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCTGA 275593 Query 182 CCAACTAGCTAAT 194 ||||||| ||||| Sbjct 275592 CCAACTACCTAAT 275580 >seq11 Length=35299535 Score = 165 bits (182), Expect = 2e-38 Identities = 277/404 (69%), Gaps = 54/404 (13%) Strand=Plus/Plus Query 11 ACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAA 70 ||||| ||||||||| | | |||||||||| ||| | ||||| || ||||||||| | || Sbjct 33685547 ACCCGTAGGCCTTCTACCTCCACGCGGCATTGCTCCGTCAGGTTTTCGCCCATTGCGGAA 33685606 Query 71 TATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGG 130 |||||||||| || |||||||||||||||||| |||||||||| | ||||||||||| Sbjct 33685607 AATTCCCCACTACTACCTCCCGTAGGAGTCTGGGCCGTGTCTCAATCCCAGTGTGGCT-- 33685664 Query 131 TCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGC 190 |||| |||||| ||| || ||| || | ||||||||| Sbjct 33685665 ----------------------GATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGC 33685702 Query 191 TAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGGTCTTGC 250 |||| | | | | ||| || | || ||| ||| |||| || | | Sbjct 33685703 TAATTAGACGCGAGCCCCTCC--------TYGGGCGGA--TTCCTCCT-TTTGCTCCT-C 33685750 Query 251 GACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCAGTTTCC 310 || || | |||||||| | |||||||| ||| | ||||||| ||||| ||| Sbjct 33685751 AAC-CTACGAGGTATTAGTAGCTGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCAGGTTCT 33685809 Query 311 CAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCG 370 | | |||||||||||||||||||| ||| || || |||||| | Sbjct 33685810 TACGCGTTACTCACCCGTCCGCCACT------GGAAACACCA-----CTTCCT------G 33685852 Query 371 TTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 | |||||||||||||||| || ||||||||||||||| ||||| Sbjct 33685853 TCCGACTTGCATGTGTTAAGCATGCCGCCAGCGTTCATCCTGAG 33685896 Score = 132 bits (146), Expect = 1e-28 Identities = 142/190 (75%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 || || ||| | ||||||| | | | |||| ||||| ||| ||| |||| | ||||| Sbjct 17831261 TTCACGACCTGTAGGCCTTTTGCCTCCACGTGGCATTGCTCTKTCAAGCTTKCACCCATG 17831202 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 | || |||||||| ||||||||||| || |||||||| || ||||||| | ||||||| Sbjct 17831201 GCAAAAAATTCCCCATTGCTGCCTCCCRTAAGAGTCTGGGCCATGTCTCAATCCCAGTGT 17831142 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 |||| |||| |||| | |||||| | |||| | ||| ||| || |||||| | | Sbjct 17831141 GGCTAATCATTCTCTTATACCAGCAACTGATCATTACCTTGGTAAGCTATTACCTCATAA 17831082 Query 185 ACTAGCTAAT 194 |||| ||||| Sbjct 17831081 ACTAKCTAAT 17831072 >seq421 Length=1359463 Score = 131 bits (144), Expect = 4e-28 Identities = 127/165 (77%), Gaps = 11/165 (7%) Strand=Plus/Plus Query 36 GGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCAC-----TGCTGCCTCC 90 ||||| ||| |||||||| |||||||| || || |||| | || ||||||| Sbjct 613984 GGCATTGCTCTGTCAGGCTTTAGCCCATTGYKGAAAATCCCCCCCCCCCTTGTTGCCTCC 614043 Query 91 CGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTA 150 ||||||||||||| |||||||||||| ||||||| |||||||||| ||||| ||| Sbjct 614044 CGTAGGAGTCTGGGCCGTGTCTCAGT------GTGGCTGATCATCCTCTCGGACCAACTA 614097 Query 151 GGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAATC 195 |||| |||||| ||| | ||| |||| |||||||||||||| Sbjct 614098 CTGATCATCGCCTTGGTAAGTTATTGCCCCACCAACTAGCTAATC 614142 >seq14 Length=29158859 Score = 131 bits (144), Expect = 4e-28 Identities = 100/120 (83%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 48 TCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCG 107 ||| |||| |||||||| | || ||||| || ||||||||||||||||||||||| | Sbjct 4318283 TCAAGCTTTTGCCCATTGCGGAAAATTCCACATTGCTGCCTCCCGTAGGAGTCTGGGYCR 4318342 Query 108 TGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGT 167 ||||||||||||| ||||| ||||||||||||||||||| ||| || |||||| ||| Sbjct 4318343 TGTCTCAGTTCCAATGTGGTTGGTCATCCTCTCAGACCAACTACTTATTATCGCCTTGGT 4318402 >seq9 Length=33717675 Score = 131 bits (144), Expect = 4e-28 Identities = 126/164 (77%), Gaps = 10/164 (6%) Strand=Plus/Plus Query 36 GGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCAC----TGCTGCCTCCC 91 ||||| ||| |||||||| |||||||| || || |||| | | |||||||| Sbjct 179496 GGCATTGCTCTGTCAGGCTTTAGCCCATTGYKGAAAATCCCCCCCCCCYTRTTGCCTCCC 179555 Query 92 GTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAG 151 |||||||||||| |||||||||||| ||||||| |||||||||| ||||| ||| Sbjct 179556 GTAGGAGTCTGGGCCGTGTCTCAGT------GTGGCTGATCATCCTCTCGGACCAACTAC 179609 Query 152 GGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAATC 195 |||| |||||| ||| | ||| |||| |||||||||||||| Sbjct 179610 TGATCATCGCCTTGGTAAGTTATTGCCCCACCAACTAGCTAATC 179653 >seq438 Length=786927 Score = 123 bits (136), Expect = 6e-26 Identities = 103/126 (82%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 69 AATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCT 128 || ||| ||||||||||||||||||| |||||| | |||||||||||| | ||||||| | Sbjct 333539 AAAATTTCCCACTGCTGCCTCCCGTATGAGTCTAGGCCGTGTCTCAGTCCTAGTGTGGTT 333598 Query 129 GGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTA 188 | |||||||||| ||||||||| |||| || || ||| || ||| || ||||||| Sbjct 333599 GATCATCCTCTCGGACCAGCTACTGATCATCATCTTGGTAAGCTATTGCCTTACCAACTA 333658 Query 189 GCTAAT 194 |||||| Sbjct 333659 GCTAAT 333664 >seq16 Length=20664393 Score = 123 bits (136), Expect = 6e-26 Identities = 103/126 (82%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 69 AATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCT 128 || ||| ||||||||||||||||||| |||||| | |||||||||||| | ||||||| | Sbjct 20117101 AAAATTTCCCACTGCTGCCTCCCGTATGAGTCTAGGCCGTGTCTCAGTCCTAGTGTGGTT 20117160 Query 129 GGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTA 188 | |||||||||| ||||||||| |||| || || ||| || ||| || ||||||| Sbjct 20117161 GATCATCCTCTCGGACCAGCTACTGATCATCATCTTGGTAAGCTATTGCCTTACCAACTA 20117220 Query 189 GCTAAT 194 |||||| Sbjct 20117221 GCTAAT 20117226 Score = 82.4 bits (90), Expect = 2e-13 Identities = 83/104 (80%), Gaps = 3/104 (3%) Strand=Plus/Plus Query 85 GCCTCCCGTAGGAGTCTGGACC-GTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGA 143 ||||||| ||||||||||| || |||||||||| |||| ||||||| |||| || ||| | Sbjct 17684553 GCCTCCC-TAGGAGTCTGGGCCCGTGTCTCAGTCCCAGCGTGGCTGATCAT-CTTTCACA 17684610 Query 144 CCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACT 187 ||| ||| |||| || ||| ||| || ||| || | |||||| Sbjct 17684611 CCACCTACTGATCATCTCCTTGGTAAGCTATTGCCTCACCAACT 17684654 Score = 78.8 bits (86), Expect = 2e-12 Identities = 76/98 (78%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 98 GTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCG 157 || ||| | |||||||| | | ||||||| || | |||||||||||||| ||| |||| Sbjct 19913545 GTTTGGGCAGTGTCTCAATCCTAGTGTGGTTGATTATCCTCTCAGACCAACTACTGATCA 19913486 Query 158 TCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAATC 195 |||||| ||| || ||| || | |||||| |||||| Sbjct 19913485 TCGCCTTGGTAAGCTATTGCCTCATCAACTATCTAATC 19913448 >seq17 Length=24923725 Score = 114 bits (126), Expect = 3e-23 Identities = 145/199 (73%), Gaps = 9/199 (5%) Strand=Plus/Plus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 || || | ||| ||||||||| | | ||| |||||| ||| ||||||| || |||||||| Sbjct 14768281 TTCACGATCCGTAGGCCTTCTACCTCCACACGGCATTGCTCCATCAGGATTTCGCCCATT 14768340 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 | | || |||||| | ||| |||||| ||| ||| | | || ||| ||| ||||||| Sbjct 14768341 GCGGAAAATTCCC-ATTGCCGCCTCCTATAGAAGTTTAGGCCATGTTACAGCCCCAGTGT 14768399 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCC----- 179 || || ||||||| || ||||||||| |||| || ||| ||| | | | || Sbjct 14768400 GGATGATCATCCTTTCGGACCAGCTATTGATCATCACCTTGGTAAGTTACCAACCTATTG 14768459 Query 180 ---CGCCAACTAGCTAATC 195 | |||||||||||||| Sbjct 14768460 TATCACCAACTAGCTAATC 14768478 >seq7 Length=26383534 Score = 109 bits (120), Expect = 1e-21 Identities = 98/124 (79%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 72 ATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGT 131 |||||||||||||| || ||||||||||| | |||||||| | |||||||||||| | Sbjct 5744242 ATTCCCCACTGCTGTTTCTCGTAGGAGTCTAGGTCGTGTCTCGGCCCCAGTGTGGCTGAT 5744183 Query 132 CATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCT 191 ||||||||| |||||||| |||| ||| || || || ||| || ||||| |||| Sbjct 5744182 CATCCTCTCGAACCAGCTACTGATCATCGYCTTAGTAAGCTATTTCCTTACCAACGAGCT 5744123 Query 192 AATC 195 |||| Sbjct 5744122 AATC 5744119 >seq1149 Length=312252 Score = 102 bits (112), Expect = 2e-19 Identities = 82/99 (83%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 || || ||||| |||| |||| | | ||||| |||| ||| |||||||||| |||||||| Sbjct 218178 TTCACGACCCGTAGGCTTTCTACCTCCACGCAGCATTGCTCCATCAGGCTTTCGCCCATT 218119 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGG 103 | | || |||||||| |||||||||||||| ||||||| Sbjct 218118 GCGAAAAATTCCCCATCGCTGCCTCCCGTAGAAGTCTGG 218080 >seq12 Length=31678690 Score = 96.9 bits (106), Expect = 8e-18 Identities = 128/179 (72%), Gaps = 7/179 (4%) Strand=Plus/Minus Query 17 AGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCC 76 ||||||||| | ||||||||| ||| | ||| | || || | |||| || || || Sbjct 3009945 AGGCCTTCTAACTCTACGCGGCATTGCTCCGTCAAGATTTCGACTATTGCAGAAAATCCC 3009886 Query 77 CCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCC 136 |||||| | |||| |||| |||| ||| | |||| | || ||||| ||||| |||| | Sbjct 3009885 CCACTGTTACCTCTCGTAAGAGTATGGGCTGTGTATTAGGCCCAGTATGGCTTATCATTC 3009826 Query 137 TCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAATC 195 |||| ||||| ||| |||| | || | ||| ||| | |||||||||||||| Sbjct 3009825 TCTCGGACCAKCTACTGATCATTGCATTGGTA-------ACCTCACCAACTAGCTAATC 3009774 Score = 77.0 bits (84), Expect = 8e-12 Identities = 72/92 (78%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 12 CCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAAT 71 |||| |||||||| | | ||||| ||| ||| ||||||| || ||||||||| || Sbjct 23613815 CCCGTAGGCCTTCCACCTCCACGCAACATTGCTCCATCAGGGTTTCGCCCATTGCAAAAA 23613874 Query 72 ATTCCCCACTGCTGCCTCCCGTAGGAGTCTGG 103 |||||||| ||||||||||||| ||| ||| Sbjct 23613875 TTTCCCCACCACTGCCTCCCGTAGAAGTTTGG 23613906 >seq2 Length=36374806 Score = 86.0 bits (94), Expect = 2e-14 Identities = 91/119 (76%), Gaps = 1/119 (1%) Strand=Plus/Minus Query 50 AGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTG 109 |||||| || ||||| || ||||||||| | |||||| |||||||| ||| | ||| Sbjct 35681569 AGGCTTTTGCACATTGCAAAAATTTCCCCACTACGGCCTCCAGTAGGAGTATGGCCTGTG 35681510 Query 110 TCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCT-AGGGATCGTCGCCTAGGT 167 ||||||| ||||||||||| |||| ||| || |||| | |||| |||||| ||| Sbjct 35681509 TCTCAGTCTCAGTGTGGCTGATCATTCTCCTGGAATAGCTAAATGATCATCGCCTTGGT 35681451 >seq5 Length=31606955 Score = 84.2 bits (92), Expect = 5e-14 Identities = 71/88 (81%), Gaps = 6/88 (7%) Strand=Plus/Minus Query 69 AATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTC------CAGT 122 || || |||||||||||||||||||| |||||||| | |||||||||| | || | Sbjct 28842350 AAAATACCCCACTGCTGCCTCCCGTAAGAGTCTGGGCAGTGTCTCAGTCCCAATGTCAAT 28842291 Query 123 GTGGCTGGTCATCCTCTCAGACCAGCTA 150 || |||| ||||||||| ||||||| || Sbjct 28842290 GTCGCTGATCATCCTCTTAGACCAGTTA 28842263 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1222384707776