Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq957 282 1e-73 seq1251 212 2e-52 seq11 203 8e-50 seq515 141 2e-31 seq855 87.8 4e-15 seq17 82.4 2e-13 seq15 82.4 2e-13 seq13 82.4 2e-13 seq300 78.8 2e-12 >seq957 Length=3583874 Score = 282 bits (312), Expect = 1e-73 Identities = 307/405 (76%), Gaps = 2/405 (0%) Strand=Plus/Plus Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 64 || ||| |||| ||||||||| |||||||||||||||||||||| ||| || ||| Sbjct 6085 TGGGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGATGCAAGC 6144 Query 65 GTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAA 124 |||||||||||| | ||||||||||| || |||||||| || ||||||| | || ||| Sbjct 6145 GTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTCCGCCGTCAAA 6204 Query 125 GGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCA 184 | | |||||||||| || || | |||||| | ||| |||| | | ||||||| Sbjct 6205 TCCCAGGGCTCAACCCTGGACAGGCGGTGGAAACTACCAAGCTGGAGTACGGTAGGGGCA 6264 Query 185 AGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAA 244 |||||| | ||| |||||||||||||||||| || | | |||||||| |||||| Sbjct 6265 GAGGGAATTTCCGGTGGAGCGGTGAAATGCGTAGAGATCGGAAAGAACACCAACGGCGAA 6324 Query 245 GGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATT 304 || |||||| | | |||||||||||| ||||||| |||||||||| ||||| Sbjct 6325 AGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCAAATGGGATT 6384 Query 305 AGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCAT-AAGTG 363 |||||||| ||||||| ||||||||||||| |||||||| | | | ||| || | Sbjct 6385 AGATACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAGGCG-CTGTGCGTATCGACCC 6443 Query 364 CTCCGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 | | |||| | ||| ||||| ||||||| || ||||||||||| Sbjct 6444 GTGCAGTGCTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTA 6488 >seq1251 Length=396947 Score = 212 bits (234), Expect = 2e-52 Identities = 253/340 (74%), Gaps = 10/340 (3%) Strand=Plus/Plus Query 2 ACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCT 61 ||| ||||| |||||||||||||||| |||||||||||||||||||| ||| |||||| Sbjct 275803 ACTCGAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGGGGCA 275862 Query 62 AGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTG 121 || ||| | |||||| ||| ||||||||||| |||||| ||| | || | ||| Sbjct 275863 AGTGTTCTTCGGAATGACTAGGCGTAAAGGGCACGTAGGCGGTGAATCGGGTTGAAAGTG 275922 Query 122 AAAGGCTATGGCTCAACCCCG-GGACTGCTTTTGAAAC---TGCAGGGCTAGAGTGCAGG 177 |||| | | | || | | ||| |||| | ||||| | || || ||||| Sbjct 275923 AAAGTC---GCCAAAAACTGGTGGAATGCTCTCGAAACCAATTCA---CTTGAGTGAGAC 275976 Query 178 AGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAG 237 || || ||||||||| | |||||| |||||||| || |||| | | |||||| ||| Sbjct 275977 AGAGGAGAGTGGAATTTCGTGTGTAGGGGTGAAATCCGAAGATCTACGAAGGAACGCCAA 276036 Query 238 TGGCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAA 297 |||||||| ||| |||| || ||| ||| | ||||||| |||||||| || Sbjct 276037 AAGCGAAGGCAGCTCTCTGGGTCCCTACCGACGCTGGAGTGCGAAAGCATGGGGAGCGAA 276096 Query 298 CAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGA 337 | ||||||||||||||||||||||| |||||||||||||| Sbjct 276097 CGGGATTAGATACCCTGGTAGTCCATGCCGTAAACGATGA 276136 >seq11 Length=35299535 Score = 203 bits (224), Expect = 8e-50 Identities = 293/412 (71%), Gaps = 8/412 (2%) Strand=Plus/Minus Query 1 TACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGC 60 || ||| ||| ||| ||||||||| |||||||||||||| |||||| ||| || Sbjct 33685510 TATTTGGGGAATAAGTATCGGCTAACTCTGTGCCAGCAGCCGCAATAATACAGAGGATGC 33685451 Query 61 TAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGT 120 ||||||||||||||| | ||||||||||| || |||||||| || ||||||| | || Sbjct 33685450 AAGCGTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTCCGTTGT 33685391 Query 121 GAAAGGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGG 180 ||| | | |||||||||| | || | |||||| | ||| |||| | ||| Sbjct 33685390 CAAATCCCAAGGCTCAACCCTAGACAGGCGGTGGAAACTACCAAGCTGGAGTATGGTAGG 33685331 Query 181 GGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGG 240 || | |||||| | ||| ||||||| |||||| ||| | | |||||||| | Sbjct 33685330 GGTAGAGGGAATTTTCGATRGAGCAGTGAAATACGTAGAGATTGGAAAGAACACCAACGR 33685271 Query 241 CGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAG 300 | || | |||||| | | |||||||||||| | ||||| | |||||||| | Sbjct 33685270 CAAAAACACTCTGCTGGGCCGACACTGACACTGAGAGACRAAAGCTAGAGGAGCAAATGG 33685211 Query 301 GATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTG-TCGGGG---CGC 356 |||||||||||| ||||||| ||||||||| ||| ||| |||| | || | | || Sbjct 33685210 GATTAGATACCCCAGTAGTCCTAGCCGTAAACAATGGATATTAGGCGCTCTGCGTATCG- 33685152 Query 357 ATAAGTGCTCCGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 | |||| | |||| | ||| ||| | ||||||| || |||| |||||| Sbjct 33685151 ACCAGTG---CAGTGCTGTAGCTAACRCGTTAAGTATCCCGCCTGAGGAGTA 33685103 Score = 138 bits (152), Expect = 3e-30 Identities = 181/247 (73%), Gaps = 8/247 (3%) Strand=Plus/Plus Query 166 CTAGAGTGCAGGAGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAG 225 || |||| | | ||||||| |||||| ||| ||||||||||||| |||| || | Sbjct 14084794 CTGGAGTACGGTAGGGGCAGAGGGAATTTTCGGTGGAGCGGTGAAATGCATAGAGATCAA 14084853 Query 226 GAGGAACACCAGTGGCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGC 285 | |||||||| ||||||| || | |||| | |||||||||||| | ||||| Sbjct 14084854 AAAGAACACCAATGGCGAAAGCACTCTACTGGGCCAACACTGACACTGAGAGACAAAAGC 14084913 Query 286 GTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGG 345 ||| |||||| ||||||||||||| ||||||| ||| |||| ||||||||||||| Sbjct 14084914 TAGGGCAGCAAATGGGATTAGATACCCCAGTAGTCCTAGCCATAAATGATGAATACTAGG 14084973 Query 346 ---TGT-CGGGGCGCATAAGTGCTCCGGTGCCGCAGCAAACGCAATAAGTATTCCACCTG 401 ||| || || ||| ||| |||| | ||| ||||| ||| ||| ||||||| Sbjct 14084974 CATTGTACGTATCG-ATATGTG---TAGTGCTGTAGCTAACGCGTTAAATATCCCACCTG 14085029 Query 402 GGGAGTA 408 ||||||| Sbjct 14085030 GGGAGTA 14085036 Score = 77.0 bits (84), Expect = 8e-12 Identities = 64/80 (80%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 268 ACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCG 327 ||| |||| |||||| |||||||||| ||||||||||||| |||||| |||| Sbjct 34796159 ACATTGAGAGAYGAAAGCTAGGGGAGCAAAYGGGATTAGATACCCCAGTAGTCATAGCCG 34796100 Query 328 TAAACGATGAATACTAGGTG 347 |||| |||| |||||||||| Sbjct 34796099 TAAATGATGGATACTAGGTG 34796080 Score = 77.0 bits (84), Expect = 8e-12 Identities = 64/80 (80%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 268 ACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCG 327 ||| |||| |||||| |||||||||| ||||||||||||| |||||| |||| Sbjct 34829920 ACATTGAGAGAYGAAAGCTAGGGGAGCAAAYGGGATTAGATACCCCAGTAGTCATAGCCG 34829979 Query 328 TAAACGATGAATACTAGGTG 347 |||| |||| |||||||||| Sbjct 34829980 TAAATGATGGATACTAGGTG 34829999 >seq515 Length=1039154 Score = 141 bits (156), Expect = 2e-31 Identities = 181/246 (74%), Gaps = 4/246 (2%) Strand=Plus/Plus Query 165 GCTAGAGTGCAGGAGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTA 224 ||||| || | | ||||||| |||||| || ||| || ||||||||| |||| || Sbjct 298786 GCTAGTGTACGGCAGGGGCAGAGGGAATTTCTGGTGGAGTGGTGAAATGTTTAGAGATCG 298845 Query 225 GGAGGAACACCAGTGGCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAG 284 | | |||||||| |||| || || || ||| | | ||| |||||||| ||||| Sbjct 298846 GAAAGAACACCAATGGCAAAAACGCTATGTTGGGCCGACACTAACACTGAGAGATGAAAG 298905 Query 285 CGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAG 344 | |||||||||| |||||||||||||| || |||| ||||||||||||| ||||| | Sbjct 298906 CTAGGGGAGCAAATGGGATTAGATACCCTAGTGGTCCTAGCCGTAAACGATGGATACTCG 298965 Query 345 GTGTCGGGGCGCAT--AAGTGCTCCGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGG 402 | || | || || | || | | |||| | ||| |||||| |||||| || ||||| Sbjct 298966 GCGT-TGTGCATATCGACCTG-TGCAGTGCTGTAGCTAACGCATGAAGTATCCCGCCTGG 299023 Query 403 GGAGTA 408 |||||| Sbjct 299024 GGAGTA 299029 >seq855 Length=4499644 Score = 87.8 bits (96), Expect = 4e-15 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 19 CGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTA 78 ||||||||| ||||| |||| ||||||||||| ||| || || ||||||| ||| | Sbjct 73584 CGGCTAACTCTGTGCCCGCAGTCGCGGTAATACAGAGGATGCAAGTGTTATCCCAAATAA 73643 Query 79 CTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGGCTCAAC 138 ||| ||||||| || |||||||| || ||||||| | || ||| | || |||| || Sbjct 73644 TTGGACGTAAAGCGTTTGTAGGTGGCTTTTTAAGTCCGCTGTCAAATCCCATAGCTCCAC 73703 Query 139 C 139 | Sbjct 73704 C 73704 >seq17 Length=24923725 Score = 82.4 bits (90), Expect = 2e-13 Identities = 113/158 (72%), Gaps = 1/158 (1%) Strand=Plus/Plus Query 188 GGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGC 247 |||||| | ||| | | ||||||||||| | |||| | ||| |||| ||| || || Sbjct 6164081 GGAATTTCG-GTGGAACAGTGAAATGCGTWTAGATTAAAAAGAATACCAAAGGCAAAAGC 6164139 Query 248 GGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGA 307 |||||||| | | | ||||||| || |||||| | ||||||| |||||||| Sbjct 6164140 ATCTTGCTGGGCCGACATTGACACTAAGAGACGAAAGTTAGAGGAGCAAWTGGGATTAGA 6164199 Query 308 TACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGG 345 |||| || || || |||||||||| |||||||| Sbjct 6164200 TACCACAATAACCCTAGCTGTAAACGATGGATACTAGG 6164237 >seq15 Length=47181002 Score = 82.4 bits (90), Expect = 2e-13 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 2 ACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCT 61 ||||| ||| |||| | ||||||| |||| |||| |||||| |||| ||| || Sbjct 14780670 ACTTGGGGAATAAGCATCCGCTAACTGTGTGCTAGCACCCGCGGAAATATAGAGGATGCA 14780729 Query 62 AGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 114 ||| ||||| ||||| | ||||||||||| | |||||||| || ||||||| Sbjct 14780730 AGCATTATCTGGAATGATTGGGCGTAAAGTATCTGTAGGTGGCTTTTTAAGTC 14780782 >seq13 Length=34719086 Score = 82.4 bits (90), Expect = 2e-13 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 264 ACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCAC 323 ||||||||| || ||||||| |||||||||| ||||||||||||| ||||||| | Sbjct 18907690 ACTGACACTAAGAGACGAAAGCTAGGGGAGCAAATGGGATTAGATACCCCAGTAGTCCTC 18907631 Query 324 GCCGTAAACGATGAATAC 341 |||||||||||| |||| Sbjct 18907630 ACCGTAAACGATGGATAC 18907613 >seq300 Length=1254730 Score = 78.8 bits (86), Expect = 2e-12 Identities = 58/68 (85%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 280 GAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAAT 339 |||||| ||||||||||| ||||||||||||| |||||| |||||||| |||| || Sbjct 714641 GAAAGCTAGGGGAGCAAACGGGATTAGATACCCCAGTAGTCATAGCCGTAAATGATGGAT 714700 Query 340 ACTAGGTG 347 |||||||| Sbjct 714701 ACTAGGTG 714708 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203184947968