Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq15 187 8e-45 seq1251 183 1e-43 seq1056 178 4e-42 seq2 122 3e-25 seq498 104 8e-20 seq1227 89.7 2e-15 seq14 86.0 2e-14 seq7 84.2 7e-14 seq13 82.4 3e-13 >seq15 Length=47181002 Score = 187 bits (206), Expect = 8e-45 Identities = 396/583 (68%), Gaps = 38/583 (7%) Strand=Plus/Minus Query 2 CGAGTCCGAACAGGGCGACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATG 61 |||||| | ||||| | ||| ||| | | |||||||| | |||||||| ||||| Sbjct 18602202 CGAGTCTTCATAGGGCAATTGTCACTGCTTATGGACCCGAACCTGGGTGATCTATCCATG 18602143 Query 62 GCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATT 121 ||||||||||| | ||| | || |||||||||||||| ||| |||||||| ||| Sbjct 18602142 ACCAGGATGAAGCTTGGGTGAAACTAAGTGGAGGTCCGAACCGACTGATGTTGAAGAATC 18602083 Query 122 AGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCT 181 || ||||||| ||||| ||||||||||| || | | ||| || |||||||||||| Sbjct 18602082 AGCGGATGAGTTGTGGTTAGGGGTGAAATGCCACTCGAACCCAGAGCTAGCTGGTTCTCC 18602023 Query 182 CCGAAAACTATTTAGGTAGTGCCTCAAGTATCAC----CATC-GGGGGTAGAGCACTGTT 236 |||||| || ||| || ||| | || |||| |||||| ||||||||| Sbjct 18602022 CCGAAATGCGTTGAGGCGCAGC----AGT-TGACTGGACATCTAGGGGTAAAGCACTGTT 18601968 Query 237 ATGGCTAGGG-GGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGC--------G 287 || ||| | | ||| ||||||| | |||||||| |||| | Sbjct 18601967 TCGGTGCGGGCCGCGAGAGCG--GTACCAAATCGAGGCAAACTCTGAATACTAGATATGA 18601910 Query 288 CATCAGTTTTACCGCGG-----------GAGTGAGGGCATGGGTGCTAAGGTCCGTGCCC 336 | ||| | || | || |||||| ||||| | |||| | | | | Sbjct 18601909 CCTCAAAATAACAGGGGTCAAGGTCGGCCAGTGAGACGATGGGGGATAAGCTTCATCGTC 18601850 Query 337 GAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAA 396 |||||| || | ||||| | ||||||||||||| ||||||| ||| ||| | | || Sbjct 18601849 GAGAGGGAAACAGCCCGGATCACCAGCTAAGGCCCCTAAATGACCGCTCAGTGATA--AA 18601792 Query 397 CGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGA 456 || || | ||| ||||||| |||| ||| || | |||||||||| | || ||||| Sbjct 18601791 GGAGGTAGGGGTGCAGAGACAGCCAGGAGGTTTGCCTAGAAGCAGCCA-CCCTTGAAAGA 18601733 Query 457 GTGCGTAACAGCTCACTAGTCGAGGAGTCGGGCGTGGATAATAATCGGGTATTAAGTTGT 516 |||||||| |||||||| ||||| || ||| || || | |||| |||| | Sbjct 18601732 GTGCGTAATAGCTCACTGATCGAGCGCTCTTGCGCCGAAGATGAACGGG-GCTAAGCGAT 18601674 Query 517 CTACCGAAGCAGTGGGATCATTTATATG-ATCGGTAGGGGAGC 558 | ||||||| ||||||| | | ||| |||||||||||||| Sbjct 18601673 YTGCCGAAGCTGTGGGAT-GTAAAAATGCATCGGTAGGGGAGC 18601632 >seq1251 Length=396947 Score = 183 bits (202), Expect = 1e-43 Identities = 323/461 (70%), Gaps = 26/461 (6%) Strand=Plus/Minus Query 35 GACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAG-GTGCGGTAACACGCCCTGGA 93 ||||||||||| | |||||| ||||| |||| ||||| | || ||||| ||| |||| Sbjct 210226 GACCCGAAACCGATCGATCTAGCCATGAGCAGGTTGAAGAGAGCTCTAACAGGCCTTGGA 210167 Query 94 GGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCT 153 || |||||||||| |||| | ||||| |||||||| ||||| |||||||||||||| Sbjct 210166 GGACCGAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGGCTAGGGGTGAAAGGCC 210107 Query 154 AAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGCCTCAAGTATC 213 || ||| | ||| |||||||||| || ||||| |||||| |||| || | | || Sbjct 210106 AACCAAGATCGGATATAGCTGGTTTTCCGCGAAATCTATTTCAGTAGAGCGT--ATGATG 210049 Query 214 ACCAT---CGGGGGTAGAGCACTGTTATGGCTAGGGGG---TCATTGCGACTTACCAAAC 267 | || | | ||||||||||| |||||||| | |||| || |||||||| | Sbjct 210048 TCGATGGCCCGAGGTAGAGCACTCAATGGGCTAGGGTGGCCCCATTTCGCCTTACCAACC 209989 Query 268 CATTGCAAACTCCGAATGC--GC----ATCAGTTTTACCGCGGGAGTGAGGGCATGGGTG 321 | | ||||||||||| | || ||| || ||| | || | | ||||| Sbjct 209988 CCAGGGAAACTCCGAATACAGGCCTAGATCGTTTGTACAGACAGACTTTTG----GGGTG 209933 Query 322 CTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACA 381 ||||| ||| ||||||| || | || || | ||||||| ||| || | Sbjct 209932 CTAAGATCCAAAGTCGAGAGGGAAACAGCCCAGATCGTACGCTAAGGTCCCTAAGCAATC 209873 Query 382 GCTAAGTTAAACTAACGAAGTCTGAT--TGCTAAGACAGCTAGGATGTTGGCTTGGAAGC 439 || ||| || || |||| |||| || | |||| | |||| || ||||||||||| Sbjct 209872 ACTTAGTGGAA--AAGGAAG--TGATCGAGCGATGACAACCAGGAGGTGGGCTTGGAAGC 209817 Query 440 AGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTCGAG 480 ||||| || ||| |||| |||||| |||||||| ||| || Sbjct 209816 AGCCA-TCCTTTGAAGAAAGCGTAATAGCTCACTGGTCTAG 209777 Score = 183 bits (202), Expect = 1e-43 Identities = 323/461 (70%), Gaps = 26/461 (6%) Strand=Plus/Minus Query 35 GACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAG-GTGCGGTAACACGCCCTGGA 93 ||||||||||| | |||||| ||||| |||| ||||| | || ||||| ||| |||| Sbjct 353375 GACCCGAAACCGATCGATCTAGCCATGAGCAGGTTGAAGAGAGCTCTAACAGGCCTTGGA 353316 Query 94 GGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCT 153 || |||||||||| |||| | ||||| |||||||| ||||| |||||||||||||| Sbjct 353315 GGACCGAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGGCTAGGGGTGAAAGGCC 353256 Query 154 AAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGCCTCAAGTATC 213 || ||| | ||| |||||||||| || ||||| |||||| |||| || | | || Sbjct 353255 AACCAAGATCGGATATAGCTGGTTTTCCGCGAAATCTATTTCAGTAGAGCGT--ATGATG 353198 Query 214 ACCAT---CGGGGGTAGAGCACTGTTATGGCTAGGGGG---TCATTGCGACTTACCAAAC 267 | || | | ||||||||||| |||||||| | |||| || |||||||| | Sbjct 353197 TCGATGGCCCGAGGTAGAGCACTCAATGGGCTAGGGTGGCCCCATTTCGCCTTACCAACC 353138 Query 268 CATTGCAAACTCCGAATGC--GC----ATCAGTTTTACCGCGGGAGTGAGGGCATGGGTG 321 | | ||||||||||| | || ||| || ||| | || | | ||||| Sbjct 353137 CCAGGGAAACTCCGAATACAGGCCTAGATCGTTTGTACAGACAGACTTTTG----GGGTG 353082 Query 322 CTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACA 381 ||||| ||| ||||||| || | || || | ||||||| ||| || | Sbjct 353081 CTAAGATCCAAAGTCGAGAGGGAAACAGCCCAGATCGTACGCTAAGGTCCCTAAGCAATC 353022 Query 382 GCTAAGTTAAACTAACGAAGTCTGAT--TGCTAAGACAGCTAGGATGTTGGCTTGGAAGC 439 || ||| || || |||| |||| || | |||| | |||| || ||||||||||| Sbjct 353021 ACTTAGTGGAA--AAGGAAG--TGATCGAGCGATGACAACCAGGAGGTGGGCTTGGAAGC 352966 Query 440 AGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTCGAG 480 ||||| || ||| |||| |||||| |||||||| ||| || Sbjct 352965 AGCCA-TCCTTTGAAGAAAGCGTAATAGCTCACTGGTCTAG 352926 >seq1056 Length=2373031 Score = 178 bits (196), Expect = 4e-42 Identities = 320/461 (69%), Gaps = 26/461 (6%) Strand=Plus/Minus Query 35 GACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAG-GTGCGGTAACACGCCCTGGA 93 ||||||||||| | |||||| ||||| |||| ||||| | || ||||| ||| |||| Sbjct 1047920 GACCCGAAACCGATCGATCTAGCCATGAGCAGGTTGAAGAGAGCTCTAACAGGCCTTGGA 1047861 Query 94 GGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCT 153 || |||||||||| |||| | ||||| |||||| | ||||| |||||||||||||| Sbjct 1047860 GGACCGAACCCACGTATGTGGCAAAATACGGGGATRACTTGTGGCTAGGGGTGAAAGGCC 1047801 Query 154 AAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGCCTCAAGTATC 213 || ||| | ||| |||||||||| || ||||| |||||| |||| || | | || Sbjct 1047800 AACCAAGATCGGATATAGCTGGTTTTCCGCGAAATCTATTTCAGTAGAGCGT--ATGATG 1047743 Query 214 ACCAT---CGGGGGTAGAGCACTGTTATGGCTAGGGGG---TCATTGCGACTTACCAAAC 267 | || | | |||| |||||| |||||||| | |||| || |||||||| | Sbjct 1047742 TCGATGGCCCGAGGTARAGCACTCAATGGGCTAGGGTGGCCCCATTTCGCCTTACCAACC 1047683 Query 268 CATTGCAAACTCCGAATGC--GC----ATCAGTTTTACCGCGGGAGTGAGGGCATGGGTG 321 | | ||||||||||| | || ||| || ||| | || | | ||||| Sbjct 1047682 CCAGGGAAACTCCGAATACAGGCCTAGATCGTTTGTACAGACAGACTTTTG----GGGTG 1047627 Query 322 CTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACA 381 ||||| ||| ||||||| || | || || | ||||||| ||| || | Sbjct 1047626 CTAAGATCCAAAGTCGAGAGGGAAACAGCCCAGATCGTACGCTAAGGTCCCTAAGCAATC 1047567 Query 382 GCTAAGTTAAACTAACGAAGTCTGAT--TGCTAAGACAGCTAGGATGTTGGCTTGGAAGC 439 || ||| || || |||| |||| || | |||| | |||| || |||||||||| Sbjct 1047566 ACTTAGTGRAA--AAGGAAG--TGATCGAGCGATGACAACCAGGAGGTGRGCTTGGAAGC 1047511 Query 440 AGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTCGAG 480 ||||| || ||| |||| |||||| |||||||| ||| || Sbjct 1047510 AGCCA-TCCTTTGAAGAAAGCGTAATAGCTCACTGGTCTAG 1047471 >seq2 Length=36374806 Score = 122 bits (134), Expect = 3e-25 Identities = 183/254 (72%), Gaps = 6/254 (2%) Strand=Plus/Plus Query 306 AGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACTATCAGCTA 365 |||||| ||||| | |||| | | | ||||||| || | ||||| | |||||| Sbjct 35934049 AGTGAGACGATGGGGGATAAGCTTCATCGTCGAGAGGGAAACAGCCCGGATCACCAGCTA 35934108 Query 366 AGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGACAGCTAGGAT 425 ||||||| ||||||| ||| ||| | | || || || | ||| ||||||| |||| Sbjct 35934109 AGGCCCCTAAATGACCGCTCAGTGATA--AAGGAGGTAGGGGTGCAGAGACAGCCAGGAG 35934166 Query 426 GTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTCGAGGAGTC 485 ||| || | |||||||||| | || ||||||||||||| |||||||| ||||| || Sbjct 35934167 GTTTGCCTAGAAGCAGCCA-CCCTTGAAAGAGTGCGTAATAGCTCACTGATCGAGCGCTC 35934225 Query 486 GGGCGTGGATAATAATCGGGTATTAAGTTGTCTACCGAAGCAGTGGGATCATTTATATG- 544 ||| || || | |||| |||| ||| ||||||| ||||||| | | ||| Sbjct 35934226 TTGCGCCGAAGATGAACGGG-GCTAAGCGATCTGCCGAAGCTGTGGGAT-GTAAAAATGC 35934283 Query 545 ATCGGTAGGGGAGC 558 |||||||||||||| Sbjct 35934284 ATCGGTAGGGGAGC 35934297 Score = 113 bits (124), Expect = 2e-22 Identities = 183/255 (72%), Gaps = 9/255 (4%) Strand=Plus/Plus Query 306 AGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACTATCAGCTA 365 |||||| ||||| | |||| | | | ||||||| || | ||||| | |||||| Sbjct 35906515 AGTGAGACGATGGGGGATAAGCTTCATCGTCGAGAGGGAAACAGCCCGGATCACCAGCTA 35906574 Query 366 AGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGACAG-CTAGGA 424 ||||||| ||||||| ||| ||| | ||| | || | ||| ||||||| | |||| Sbjct 35906575 AGGCCCCTAAATGACCGCTCAGTGA---TAAAGGAGGTAGGGTGC-AAGACAGCCCAGGA 35906630 Query 425 TGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTCGAGGAGT 484 ||| || | |||||||||| | || ||||||||||||| |||||||| ||||| | Sbjct 35906631 GGTTTGCCTAGAAGCAGCCA-CCCTTGAAAGAGTGCGTAATAGCTCACTGATCGAGCGCT 35906689 Query 485 CGGGCGTGGATAATAATCGGGTATTAAGTTGTCTACCGAAGCAGTGGGATCATTTATATG 544 | ||| || || | |||| |||| ||| ||||||| ||||||| | | ||| Sbjct 35906690 CTTGCGCCGAAGATGAACGGG-GCTAAGCGATCTGCCGAAGCTGTGGGAT-GTAAAAATG 35906747 Query 545 -ATCGGTAGGGGAGC 558 |||||||||||||| Sbjct 35906748 CATCGGTAGGGGAGC 35906762 Score = 111 bits (122), Expect = 5e-22 Identities = 96/118 (81%), Gaps = 1/118 (1%) Strand=Plus/Minus Query 36 ACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAG-GTGCGGTAACACGCCCTGGAG 94 |||||||||||| || ||| ||||| |||| ||||| | || ||||| || ||||| Sbjct 28123145 ACCCGAAACCAATCGACCTAGCCATGAGCAGGTTGAAGAGAGCTCTAACAGGCATTGGAG 28123086 Query 95 GTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGC 152 | |||||||||| |||| ||||||| |||||||| |||||| |||||||||||||| Sbjct 28123085 GACCGAACCCACGTATGTGGAAAAATACGGGGATGAACTGTGGCTAGGGGTGAAAGGC 28123028 >seq498 Length=5058101 Score = 104 bits (114), Expect = 8e-20 Identities = 96/119 (81%), Gaps = 2/119 (2%) Strand=Plus/Plus Query 36 ACCCGAAACCAAGT-GATCTACCCATGGCCAGGATGAAG-GTGCGGTAACACGCCCTGGA 93 |||||||||| | | || ||| ||||| |||| ||||| | || ||||| || |||| Sbjct 1728580 ACCCGAAACCCAATCGACCTAGCCATGAGCAGGTTGAAGAGAGCTCTAACAGGCATTGGA 1728639 Query 94 GGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGC 152 || |||||||||| |||| ||||||| |||||||| |||||| |||||||||||||| Sbjct 1728640 GGACCGAACCCACGTATGTGGAAAAATACGGGGATGAACTGTGGCTAGGGGTGAAAGGC 1728698 >seq1227 Length=6592037 Score = 89.7 bits (98), Expect = 2e-15 Identities = 110/151 (73%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 2 CGAGTCCGAACAGGGCGACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATG 61 |||||| || ||||| | ||| ||| | | ||||||| | ||||||| |||| Sbjct 5500691 CGAGTCTTAATAGGGCAATTGTCACTGCTTATGAACCCGAACTTGATTGATCTATCCATA 5500632 Query 62 GCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATT 121 | ||| || | | ||| | || |||||||| ||||| ||| |||||||| |||| Sbjct 5500631 ACTRGGAAGAGGTTTRGGTGAAACTAAGTGGAGGTCTGAACCAACTGATGTTGAAGAATT 5500572 Query 122 AGGGGATGAGCTGTGGGTAGGGGTGAAAGGC 152 || ||||||| ||||| ||||||||||| || Sbjct 5500571 AGCGGATGAGTTGTGGTTAGGGGTGAAATGC 5500541 >seq14 Length=29158859 Score = 86.0 bits (94), Expect = 2e-14 Identities = 141/201 (70%), Gaps = 8/201 (4%) Strand=Plus/Plus Query 90 TGGAGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAA 149 |||||| ||||||||| |||| ||||||| | |||||| ||||| ||||||||||| Sbjct 5349272 TGGAGGACCGAACCCATGTATGTGGAAAAATACGAGGATGACTTGTGGCTAGGGGTGAAA 5349331 Query 150 GGCTAAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGCCTCAAG 209 || || ||| | ||| |||||||||| || |||| ||||| |||| | | || Sbjct 5349332 GGTCAACCAAGATAGGATATAGCTGGTTTTCCGTGAAATTTATTTTAGTAGAG--TGTAG 5349389 Query 210 TATCACCAT---CGGGGGTAGAGCACTGTTATGGCTAGGGGG---TCATTGCGACTTACC 263 || | || | ||||||||||| |||||||| | |||| | |||||| Sbjct 5349390 GATGTCGATGGCCCTAGGTAGAGCACTCAATGGGCTAGGGTGGCCCCATTTCACCTTACC 5349449 Query 264 AAACCATTGCAAACTCCGAAT 284 || | | ||||||||||| Sbjct 5349450 AACCTTAAGGAAACTCCGAAT 5349470 >seq7 Length=26383534 Score = 84.2 bits (92), Expect = 7e-14 Identities = 107/146 (73%), Gaps = 1/146 (1%) Strand=Plus/Plus Query 35 GACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAG 94 ||||| || | | |||||||| ||||| ||| || ||| | || | || ||||| Sbjct 24596913 GACCCAAACCTAGGTGATCTATCCATGATCAGCATAAAGCTTGAGTGAAACTAAGTGGAG 24596972 Query 95 GTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTA 154 |||| |||| |||||||||||| ||| | ||||||| ||||| || ||||||| || | Sbjct 24596973 GTCCCAACCGACTAATGTTGAAGAATCATCGGATGAGTTGTGGTTAAGGGTGAATTGCCA 24597032 Query 155 AACAAACTTGGAAATAGCTGGTTCTC 180 | || | || |||||||||||| Sbjct 24597033 CTC-GACCTAGAGTTAGCTGGTTCTC 24597057 >seq13 Length=34719086 Score = 82.4 bits (90), Expect = 3e-13 Identities = 83/109 (76%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 41 AAACCAAGTGATCTACCCATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGA 100 |||||| |||||||| ||| |||||||||| | ||| | || ||||||||| | Sbjct 544786 AAACCAGGTGATCTATCCACAAYCAGGATGAAGCTTGGGTGAAACCAAATGGAGGTCCAA 544845 Query 101 ACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAA 149 ||| ||| |||||||| ||| | ||||| ||||| ||||||||||| Sbjct 544846 ACCAACTGATGTTGAAGAATCAACAAATGAGTTGTGGTTAGGGGTGAAA 544894 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1689578863104