Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= AAMG01002194.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value seq15 114 2e-23 seq637 111 3e-22 seq1251 80.6 5e-13 seq1056 80.6 5e-13 seq13 80.6 5e-13 seq64 73.4 7e-11 >seq15 Length=47181002 Score = 114 bits (126), Expect = 2e-23 Identities = 157/215 (73%), Gaps = 12/215 (6%) Strand=Plus/Minus Query 38 GAAGGACGTAGTAGCTTGCGATAAGCTGCGGGGAGTGAGCAAACACACTTTGATCCGCAG 97 ||||| ||||||| ||| | ||| |||||||| ||| | | | |||||| || Sbjct 18602798 GAAGGGCGTAGTAAGCGACGAAATGCTTCGGGGAGTTG--AAAAAAGCGTAGATCCGGAG 18602741 Query 98 ATTTCCGAATGGGGAAACCCGGCCCTTTGGGTCATTGCATGCTGAATACATAGGTATGCA 157 ||| |||||| || |||| ||| | | ||| |||| ||| ||| || | ||| Sbjct 18602740 ATTCCCGAATAGGTTAACC------TTTCGAAC--TGC-TGCTTAATCCATGGGCAGGCA 18602690 Query 158 A-AGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGAT 216 | || ||| ||||||||||||||||| |||||| ||||||||||| ||| | ||| Sbjct 18602689 AGAGACAACCTGGCGAACTGAAACATCTTAGTAGCCAGAGGAAAAGAAAGCAAAAGCGAT 18602630 Query 217 TCCCAAAGTAGTGGCGAGCGAAATGGGATGAGCCT 251 |||| ||||| |||||||||||||||| ||||| Sbjct 18602629 TCCCGTAGTAGCGGCGAGCGAAATGGGAGCAGCCT 18602595 >seq637 Length=4049282 Score = 111 bits (122), Expect = 3e-22 Identities = 142/191 (74%), Gaps = 11/191 (6%) Strand=Plus/Plus Query 62 GCTGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCC 121 ||| |||||||| | ||| | | | |||||| ||||| |||||| || |||| Sbjct 1720687 GCTTCGGGGAGTT-GAAAATAAGCGTAGATCCGGAGATTCCCGAATAGGTTAACC----- 1720740 Query 122 CTTTGGGTCATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAAC 180 ||| | | ||| |||| ||| ||| || | |||| || ||| ||||||||||||| Sbjct 1720741 -TTTCGAAC--TGC-TGCTTAATCCATGGGCAGGCAAGAGACAACCTGGCGAACTGAAAC 1720796 Query 181 ATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAAT 240 |||| |||||| ||||||||||| ||| | ||||||| ||||| |||||||||||| Sbjct 1720797 ATCTTAGTAGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAAT 1720856 Query 241 GGGATGAGCCT 251 |||| ||||| Sbjct 1720857 GGGAGCAGCCT 1720867 >seq1251 Length=396947 Score = 80.6 bits (88), Expect = 5e-13 Identities = 64/77 (83%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 169 GCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGT 228 |||||||||||||||| ||||||| ||||| |||||||||||||| || ||||| Sbjct 210871 GCGAACTGAAACATCTTAGTAGCTAAAGGAAGGGAAATCAACCGAGACCCCGTTAGTAGC 210812 Query 229 GGCGAGCGAAATGGGAT 245 ||||||||||| |||| Sbjct 210811 GGCGAGCGAAAGCGGAT 210795 Score = 80.6 bits (88), Expect = 5e-13 Identities = 64/77 (83%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 169 GCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGT 228 |||||||||||||||| ||||||| ||||| |||||||||||||| || ||||| Sbjct 354020 GCGAACTGAAACATCTTAGTAGCTAAAGGAAGGGAAATCAACCGAGACCCCGTTAGTAGC 353961 Query 229 GGCGAGCGAAATGGGAT 245 ||||||||||| |||| Sbjct 353960 GGCGAGCGAAAGCGGAT 353944 >seq1056 Length=2373031 Score = 80.6 bits (88), Expect = 5e-13 Identities = 64/77 (83%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 169 GCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGT 228 |||||||||||||||| ||||||| ||||| |||||||||||||| || ||||| Sbjct 1048565 GCGAACTGAAACATCTTAGTAGCTAAAGGAAGGGAAATCAACCGAGACCCCGTTAGTAGC 1048506 Query 229 GGCGAGCGAAATGGGAT 245 ||||||||||| |||| Sbjct 1048505 GGCGAGCGAAAGCGGAT 1048489 >seq13 Length=34719086 Score = 80.6 bits (88), Expect = 5e-13 Identities = 80/104 (77%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 139 CTGAATACATAGGTATGCAAAGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCAGGA 198 || ||| |||||| | ||||| || ||| ||||||||||||| ||||||| | || Sbjct 22006967 CTTAATCCATAGGCAGGCAAAAGACACTTGGCAAACTGAAACATCTTAGTAGCTAGATGA 22007026 Query 199 AAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGG 242 || |||| || | |||||||| ||||| ||||||| |||||| Sbjct 22007027 AAGGAAAGTAAAAGTGATTCCCATAGTAGCGGCGAGCAAAATGG 22007070 >seq64 Length=1417348 Score = 73.4 bits (80), Expect = 7e-11 Identities = 91/122 (75%), Gaps = 2/122 (2%) Strand=Plus/Plus Query 131 ATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGTA 189 ||||| |||| ||| ||| || | |||| || || ||| |||| |||||||| |||| Sbjct 822329 ATTGC-TGCTTAATCCATGGGCAGGCAAGAGACAATCTGGCAAACTAAAACATCTTAGTA 822387 Query 190 GCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAGC 249 ||| ||||||||||| ||| |||| | ||||| |||||| |||||||| ||| Sbjct 822388 GCTAGAGGAAAAGAAAGCAAAAACGATTTCTGTAGTAGCAGCGAGCAAAATGGGAGCAGC 822447 Query 250 CT 251 || Sbjct 822448 CT 822449 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 918388510816