Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq1251 194 6e-47 seq1056 194 6e-47 seq2 145 3e-32 seq439 114 4e-23 seq17 111 5e-22 seq13 80.6 9e-13 seq6 80.6 9e-13 >seq1251 Length=396947 Score = 194 bits (214), Expect = 6e-47 Identities = 339/489 (69%), Gaps = 26/489 (5%) Strand=Plus/Plus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 ||||| ||| ||||| |||||| || ||| | | |||| |||| || | || | Sbjct 208383 TCGACCAGTAGGTCTCACAGTCAGGCAGGCTTATACCATTACGCTCAACAGCAGAATCTT 208442 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 | | |||| ||||| | | |||||||||| ||| ||||| || ||||||||| Sbjct 208443 AGCT----TGAGCCTACCTTCGCACACCTCCGTTACTCTTTAGGAGG-CATCCGCCCCAG 208497 Query 121 TTAAACTACCCACCAGGCACTGTCCC---CAACCCAGATCATGGG--CCAAGGTTAGATA 175 ||||||||||||| ||| |||||| | ||| || || || | |||||| | Sbjct 208498 ATAAACTACCCACCTCGCAGTGTCCCGCCCCCCCCGAATTATCGGTGCGGCGGTTAGGCA 208557 Query 176 TCCACTACGGTCAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATC 235 ||| | |||||||| ||||| | | || | | ||| | || | Sbjct 208558 TCCTTAGACGAAAGAGTGGTCTTTCAGGATTGG-TCG--------TTGTGTGTCACCACC 208608 Query 236 ATAGTCTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAG 295 |||||||||||||||||| | | || || | | |||||||||| ||| Sbjct 208609 ------TCCCACCTATCCTACACATTCGATCAAGGTTGTCACTGCGAAGCTATAGTAAAG 208662 Query 296 GTCC-CGGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTT 354 || | ||||||||| |||| |||| | | ||||||| || | | |||||| Sbjct 208663 GTGCACGGGGTCTTACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTT 208722 Query 355 CACCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACT 414 ||||||| | || |||||||| ||| ||||||||| |||||||||||||||| ||| Sbjct 208723 CACCGGGTCCATGTCGGAGACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACT 208782 Query 415 TACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGG 474 || |||||||||||||||||||||||||| |||| |||||| ||||||||||| ||| Sbjct 208783 TATGCGACAAGGAATTTCGCTACCTTAGGACAGTTAGAGTTACTGCCGCCGTTTACCGGG 208842 Query 475 GCTTCAATT 483 ||||| ||| Sbjct 208843 GCTTCCATT 208851 Score = 194 bits (214), Expect = 6e-47 Identities = 339/489 (69%), Gaps = 26/489 (5%) Strand=Plus/Plus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 ||||| ||| ||||| |||||| || ||| | | |||| |||| || | || | Sbjct 351532 TCGACCAGTAGGTCTCACAGTCAGGCAGGCTTATACCATTACGCTCAACAGCAGAATCTT 351591 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 | | |||| ||||| | | |||||||||| ||| ||||| || ||||||||| Sbjct 351592 AGCT----TGAGCCTACCTTCGCACACCTCCGTTACTCTTTAGGAGG-CATCCGCCCCAG 351646 Query 121 TTAAACTACCCACCAGGCACTGTCCC---CAACCCAGATCATGGG--CCAAGGTTAGATA 175 ||||||||||||| ||| |||||| | ||| || || || | |||||| | Sbjct 351647 ATAAACTACCCACCTCGCAGTGTCCCGCCCCCCCCGAATTATCGGTGCGGCGGTTAGGCA 351706 Query 176 TCCACTACGGTCAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATC 235 ||| | |||||||| ||||| | | || | | ||| | || | Sbjct 351707 TCCTTAGACGAAAGAGTGGTCTTTCAGGATTGG-TCG--------TTGTGTGTCACCACC 351757 Query 236 ATAGTCTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAG 295 |||||||||||||||||| | | || || | | |||||||||| ||| Sbjct 351758 ------TCCCACCTATCCTACACATTCGATCAAGGTTGTCACTGCGAAGCTATAGTAAAG 351811 Query 296 GTCC-CGGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTT 354 || | ||||||||| |||| |||| | | ||||||| || | | |||||| Sbjct 351812 GTGCACGGGGTCTTACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTT 351871 Query 355 CACCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACT 414 ||||||| | || |||||||| ||| ||||||||| |||||||||||||||| ||| Sbjct 351872 CACCGGGTCCATGTCGGAGACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACT 351931 Query 415 TACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGG 474 || |||||||||||||||||||||||||| |||| |||||| ||||||||||| ||| Sbjct 351932 TATGCGACAAGGAATTTCGCTACCTTAGGACAGTTAGAGTTACTGCCGCCGTTTACCGGG 351991 Query 475 GCTTCAATT 483 ||||| ||| Sbjct 351992 GCTTCCATT 352000 >seq1056 Length=2373031 Score = 194 bits (214), Expect = 6e-47 Identities = 339/489 (69%), Gaps = 26/489 (5%) Strand=Plus/Plus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 ||||| ||| ||||| |||||| || ||| | | |||| |||| || | || | Sbjct 1046077 TCGACCAGTAGGTCTCACAGTCAGGCAGGCTTATACCATTACGCTCAACAGCAGAATCTT 1046136 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 | | |||| ||||| | | |||||||||| ||| ||||| || ||||||||| Sbjct 1046137 AGCT----TGAGCCTACCTTCGCACACCTCCGTTACTCTTTAGGAGG-CATCCGCCCCAG 1046191 Query 121 TTAAACTACCCACCAGGCACTGTCCC---CAACCCAGATCATGGG--CCAAGGTTAGATA 175 ||||||||||||| ||| |||||| | ||| || || || | |||||| | Sbjct 1046192 ATAAACTACCCACCTCGCAGTGTCCCGCCCCCCCCGAATTATCGGTGCGGCGGTTAGGCA 1046251 Query 176 TCCACTACGGTCAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATC 235 ||| | |||||||| ||||| | | || | | ||| | || | Sbjct 1046252 TCCTTAGACGAAAGAGTGGTCTTTCAGGATTGG-TCG--------TTGTGTGTCACCACC 1046302 Query 236 ATAGTCTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAG 295 |||||||||||||||||| | | || || | | |||||||||| ||| Sbjct 1046303 ------TCCCACCTATCCTACACATTCGATCAAGGTTGTCACTGCGAAGCTATAGTAAAG 1046356 Query 296 GTCC-CGGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTT 354 || | ||||||||| |||| |||| | | ||||||| || | | |||||| Sbjct 1046357 GTGCACGGGGTCTTACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTT 1046416 Query 355 CACCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACT 414 ||||||| | || |||||||| ||| ||||||||| |||||||||||||||| ||| Sbjct 1046417 CACCGGGTCCATGTCGGAGACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACT 1046476 Query 415 TACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGG 474 || |||||||||||||||||||||||||| |||| |||||| ||||||||||| ||| Sbjct 1046477 TATGCGACAAGGAATTTCGCTACCTTAGGACAGTTAGAGTTACTGCCGCCGTTTACCGGG 1046536 Query 475 GCTTCAATT 483 ||||| ||| Sbjct 1046537 GCTTCCATT 1046545 >seq2 Length=36374806 Score = 145 bits (160), Expect = 3e-32 Identities = 213/296 (72%), Gaps = 9/296 (3%) Strand=Plus/Minus Query 267 CCGAATGCCAATACCAAGCTATAGTGAAGGTCCCG-GGGTCTTTTCGTCCTGCCGCGCGA 325 || || |||||| ||| | | ||||||| | | |||||||| |||| | || | Sbjct 35935195 CCCAAAGCCAATCCCAGGGAACAGTGAAGCTTCATAGGGTCTTTCTGTCCAGGTGCAGGT 35935136 Query 326 AACGAGCATCTTTACTCGTACTGCAATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAG 385 | ||||||| || | | ||||||||| |||| | ||||||| | || Sbjct 35935135 AGTCCGCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGT-GCCCAG 35935077 Query 386 -TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 444 |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 35935076 ATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 35935017 Query 445 TGGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAATTACCCGCCTCACACACCACGTG 504 ||||||||||| |||||||| || |||||||| | ||| ||| || || Sbjct 35935016 CCGTTATAGTTACGGCCGCCGTTCACCGGGGCTTC-GGTCGCCGGCTC-----CCCTGTC 35934963 Query 505 GTGTGCTCACGAGTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCAGTCCGTATAC 560 | | |||| | ||| ||||||| |||| ||||||||||||| || |||| Sbjct 35934962 ATCAGGTCACCAACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATAC 35934907 Score = 107 bits (118), Expect = 7e-21 Identities = 82/97 (85%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 386 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAT 445 ||||||| | ||||||||||| |||||||| |||||||||||||| ||||||||||| Sbjct 6148626 TCGTTACTCATTTCGTGCAGGTTGGAACTTATTCGACAAGGAATTTCTCTACCTTAGGAC 6148685 Query 446 GGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAAT 482 |||||||||| | |||||| || ||||||||||| Sbjct 6148686 CATTATAGTTACGGCTGCCGTTCACCGGGGCTTCAAT 6148722 Score = 80.6 bits (88), Expect = 9e-13 Identities = 69/87 (79%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 388 GTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGG 447 || || || || ||| |||| |||||| | |||||| |||||| ||||| |||||| Sbjct 4820309 GTCACACCTTTTGTGTGGGTCRAAACTTATCGGACAAGAAATTTCACTACCKTAGGATCA 4820368 Query 448 TTATAGTTACCACCGCCGTTTACTGGG 474 ||||||||| |||||||||||| ||| Sbjct 4820369 TTATAGTTATGACCGCCGTTTACCGGG 4820395 >seq439 Length=4537371 Score = 114 bits (126), Expect = 4e-23 Identities = 105/130 (81%), Gaps = 2/130 (2%) Strand=Plus/Minus Query 351 ATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAG-TCGTTACGCCATTCGTGCAGGTCG 409 ||||||||| |||| | ||||| || | || |||||||||| ||| ||| |||| Sbjct 4498956 ATTTCACCGAGCCTCTCTCTGAGATAGT-GCCCAGATCGTTACGCCTTTCATGCGGGTCA 4498898 Query 410 GAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTA 469 |||| ||||||| |||||||||| ||||||||||| ||||||||||| | ||||||| | Sbjct 4498897 GAACATACCCGATAAGGAATTTCACTACCTTAGGAGCGTTATAGTTACGATCGCCGTTCA 4498838 Query 470 CTGGGGCTTC 479 | |||||||| Sbjct 4498837 CCGGGGCTTC 4498828 >seq17 Length=24923725 Score = 111 bits (122), Expect = 5e-22 Identities = 104/130 (80%), Gaps = 2/130 (2%) Strand=Plus/Minus Query 351 ATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAG-TCGTTACGCCATTCGTGCAGGTCG 409 ||||||||| |||| | ||||| || | || |||||||||| ||| || |||| Sbjct 4470771 ATTTCACCGAGCCTCTCTCTGAGATAGT-GCCCAGATCGTTACGCCTTTCATGTGGGTCA 4470713 Query 410 GAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTA 469 |||| ||||||| |||||||||| ||||||||||| ||||||||||| | ||||||| | Sbjct 4470712 GAACATACCCGATAAGGAATTTCACTACCTTAGGAGCGTTATAGTTACGATCGCCGTTCA 4470653 Query 470 CTGGGGCTTC 479 | |||||||| Sbjct 4470652 CCGGGGCTTC 4470643 >seq13 Length=34719086 Score = 80.6 bits (88), Expect = 9e-13 Identities = 76/97 (78%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 386 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAT 445 || |||| | ||||||| || | ||||||||| |||||||||||||||||||||||| Sbjct 22008793 TCATTACTCATTTCGTGCGAGTTGAAACTTACCCAACAAGGAATTTCGCTACCTTAGGAC 22008734 Query 446 GGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAAT 482 ||||||||| | ||| || | |||| |||||| Sbjct 22008733 CATTATAGTTATGGCTGCCATTCATCGGGGTTTCAAT 22008697 >seq6 Length=25473135 Score = 80.6 bits (88), Expect = 9e-13 Identities = 76/97 (78%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 386 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAT 445 || |||| | ||||||| || | ||||||||| |||||||||||||||||||||||| Sbjct 7126222 TCATTACTCATTTCGTGCGAGTTGAAACTTACCCAACAAGGAATTTCGCTACCTTAGGAC 7126163 Query 446 GGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAAT 482 ||||||||| | ||| || | |||| |||||| Sbjct 7126162 CATTATAGTTATGGCTGCCATTCATCGGGGTTTCAAT 7126126 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1702378702976