Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq957 125 2e-26 seq1251 116 8e-24 seq11 89.7 1e-15 seq14 87.8 4e-15 >seq957 Length=3583874 Score = 125 bits (138), Expect = 2e-26 Identities = 194/279 (70%), Gaps = 18/279 (6%) Strand=Plus/Minus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 |||||||||||| |||||||||||||||||||| || ||| || | Sbjct 6121 GGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCAGATACCGTCAT-----------T 6073 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 | || ||| | |||||||||| || | |||||| ||||| ||| ||||| Sbjct 6072 GC------TTCTTCTCCGGGAAAAGAAGTTCACGACCCGTAGG-CCTTCTACCTCCACGC 6020 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | | ||| |||| || ||| |||||| || |||| |||||||||||||||||| Sbjct 6019 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAWTTCCCCACTGCTGCCTCCCGTAG 5960 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 |||| ||| |||||||||||| ||| ||||| || | ||||||| || | ||| || Sbjct 5959 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 5900 Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 | | | || ||| || || || | || |||| ||||| Sbjct 5899 CATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAAT 5861 >seq1251 Length=396947 Score = 116 bits (128), Expect = 8e-24 Identities = 145/199 (73%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 105 CCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCA 164 ||||| || |||||| | | ||||| || | || ||| |||||| |||| ||||| || Sbjct 275754 CCTTCTTCACTCACGCGATATTGCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCA 275695 Query 165 CTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCT 224 |||||||| ||||| ||||| || |||||||||||| ||| ||||| || | ||| Sbjct 275694 CTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCGAA 275635 Query 225 CAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAAC 284 ||| | ||| |||| | |||| ||| ||| ||||| || |||||||||| || Sbjct 275634 AAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCTGACCAACTACCTAATACTAC 275575 Query 285 GCATCCCCATCGTACACCG 303 ||| | |||| ||| || Sbjct 275574 GCAGGCTCATCAAACAGCG 275556 >seq11 Length=35299535 Score = 89.7 bits (98), Expect = 1e-15 Identities = 99/131 (76%), Gaps = 1/131 (1%) Strand=Plus/Plus Query 81 AAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTC 140 |||||||||| | | |||||| ||||| ||| ||||| | | ||| |||| | Sbjct 33685533 AAAAGAAGTTCATGACCCGTAGG-CCTTCTACCTCCACGCGGCATTGCTCCGTCAGGTTT 33685591 Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAG 200 ||| |||||| || ||||| |||| || |||||||||||||| ||| |||||||||| Sbjct 33685592 TCGCCCATTGCGGAAAATTCCCCACTACTACCTCCCGTAGGAGTCTGGGCCGTGTCTCAA 33685651 Query 201 TTCCAATGTGG 211 | ||| ||||| Sbjct 33685652 TCCCAGTGTGG 33685662 >seq14 Length=29158859 Score = 87.8 bits (96), Expect = 4e-15 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 145 CCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCC 204 |||||| || ||||| || ||||||||||||||||||| ||| | |||||||||||| Sbjct 4318295 CCATTGCGGAAAATTCCACATTGCTGCCTCCCGTAGGAGTCTGGGYCRTGTCTCAGTTCC 4318354 Query 205 AATGTGGGGGACCTTCCTCTCAGA 228 ||||||| | | |||||||||| Sbjct 4318355 AATGTGGTTGGTCATCCTCTCAGA 4318378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1068786629312