Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq625 107 3e-21 seq501 107 3e-21 seq435 107 3e-21 seq430 107 3e-21 seq179 107 3e-21 seq2 107 3e-21 seq11 91.5 2e-16 seq341 80.6 4e-13 seq10 80.6 4e-13 seq7 80.6 4e-13 >seq625 Length=5148542 Score = 107 bits (118), Expect = 3e-21 Identities = 99/123 (80%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| | | ||||||| | ||| || ||| || |||| Sbjct 228110 GTACGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 228053 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | ||||||||||| |||||||||||||||||||||||| || | Sbjct 228052 GGCGCGAAGCTACCGTGCGCTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTA 227993 Query 121 GAA 123 ||| Sbjct 227992 GAA 227990 >seq501 Length=1008263 Score = 107 bits (118), Expect = 3e-21 Identities = 99/123 (80%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| | | ||||||| | ||| || ||| || |||| Sbjct 919474 GTACGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 919417 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | ||||||||||| |||||||||||||||||||||||| || | Sbjct 919416 GGCGCGAAGCTACCGTGCGCTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTA 919357 Query 121 GAA 123 ||| Sbjct 919356 GAA 919354 >seq435 Length=330949 Score = 107 bits (118), Expect = 3e-21 Identities = 99/123 (80%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| | | ||||||| | ||| || ||| || |||| Sbjct 123458 GTACGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 123515 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | ||||||||||| |||||||||||||||||||||||| || | Sbjct 123516 GGCGCGAAGCTACCGTGCGCTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTA 123575 Query 121 GAA 123 ||| Sbjct 123576 GAA 123578 >seq430 Length=2329875 Score = 107 bits (118), Expect = 3e-21 Identities = 99/123 (80%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| | | ||||||| | ||| || ||| || |||| Sbjct 2164504 GTACGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 2164561 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | ||||||||||| |||||||||||||||||||||||| || | Sbjct 2164562 GGCGCGAAGCTACCGTGCGCTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTA 2164621 Query 121 GAA 123 ||| Sbjct 2164622 GAA 2164624 >seq179 Length=736049 Score = 107 bits (118), Expect = 3e-21 Identities = 99/123 (80%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| | | ||||||| | ||| || ||| || |||| Sbjct 544221 GTACGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 544278 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | ||||||||||| |||||||||||||||||||||||| || | Sbjct 544279 GGCGCGAAGCTACCGTGCGCTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTA 544338 Query 121 GAA 123 ||| Sbjct 544339 GAA 544341 >seq2 Length=36374806 Score = 107 bits (118), Expect = 3e-21 Identities = 99/123 (80%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| | | ||||||| | ||| || ||| || |||| Sbjct 11117327 GTACGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 11117270 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | ||||||||||| |||||||||||||||||||||||| || | Sbjct 11117269 GGCGCGAAGCTACCGTGCGCTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTA 11117210 Query 121 GAA 123 ||| Sbjct 11117209 GAA 11117207 Score = 73.4 bits (80), Expect = 6e-11 Identities = 84/112 (75%), Gaps = 2/112 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || || | ||||||| | | | || ||| || ||| Sbjct 32963533 GTACGAGAGGAACCGTTGATTTAC--ACAATTGGTCATCGTGCTTGGTTGAAAAGCTAGT 32963476 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAAT 112 | || ||||||||| | ||||||||||| ||||| |||||||||| ||||| Sbjct 32963475 GGCGTGAAGCTACCCTGCGCTGGATTATGACTGAATGCCTCTAAGTTAGAAT 32963424 >seq11 Length=35299535 Score = 91.5 bits (100), Expect = 2e-16 Identities = 62/70 (89%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 54 AGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 113 || ||||| |||||||||||||| |||| |||||| ||||||||||||||||||||||| Sbjct 12884864 AGCCAGTGGCGCGAAGCTACCATGCGCTGAATTATGACTGAACGCCTCTAAGTCAGAATC 12884805 Query 114 CATGCCAGAA 123 || || |||| Sbjct 12884804 CAGGCTAGAA 12884795 >seq341 Length=1191817 Score = 80.6 bits (88), Expect = 4e-13 Identities = 91/123 (74%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 || ||||| |||||| || |||| | ||||||| | | | || ||| || ||| Sbjct 370502 GTRCGAGAAGAACCGTTGA-TTCACAC-AATTGGTCATCGYGCTTGGTTGAAAAGCTAGT 370445 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | | ||||||| | | | ||||||||| ||||||| ||||||||||||||||| || | Sbjct 370444 GGYGAGAAGCTAYCRTGCGTTGGATTATGACTGAACGTCTCTAAGTCAGAATCCAAGCTA 370385 Query 121 GAA 123 ||| Sbjct 370384 GAA 370382 >seq10 Length=33391235 Score = 80.6 bits (88), Expect = 4e-13 Identities = 87/113 (77%), Gaps = 2/113 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| | ||||||||| | || || ||| || || | Sbjct 7101535 GTACGAGAGGAACCGTTGA-TTC-GCATAATTGGTCATCGCACTTGGTTGAATAGCCATT 7101478 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 113 | || ||||||||| | |||||||||| || || ||||||||||||||||| Sbjct 7101477 GGCGTGAAGCTACCGTGCGCTGGATTATAACTAAATGCCTCTAAGTCAGAATC 7101425 >seq7 Length=26383534 Score = 80.6 bits (88), Expect = 4e-13 Identities = 86/111 (77%), Gaps = 2/111 (2%) Strand=Plus/Minus Query 3 ACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGC 62 ||||||||||||| ||||| | | ||||||| | ||| || ||| || |||| Sbjct 20864654 ACGAGAGGAACCGTT-AATTC-GCACAATTGGTCATCGCGCTTGGTTGAAAAGCTAGTGG 20864597 Query 63 CGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 113 || |||||||| || || |||||||| ||||| ||||||||||||||||| Sbjct 20864596 CGTGAAGCTACTATGTGTTGGATTATAACTGAATGCCTCTAAGTCAGAATC 20864546 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819190072064