Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq9 163 2e-35 seq1241 159 3e-34 seq855 158 1e-33 seq439 136 3e-27 >seq9 Length=33717675 Score = 163 bits (180), Expect = 2e-35 Identities = 569/874 (65%), Gaps = 18/874 (2%) Strand=Plus/Plus Query 61064 TGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCT 61123 ||||||| ||| |||| || || ||| |||||||| ||||||||||| ||||||| Sbjct 736882 TGTTCCCGATCCAGTACCCTGAAATCTGGGAAATGTACAAGAAGGCGGAAGCCTCCTTCT 736941 Query 61124 GGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAGCGTTTATCGAGCG 61183 |||| | ||||||||||| | | | | ||| | ||||||| | |||| || Sbjct 736942 GGACCGCCGAGGAGGTCGACCTTTGCCAGGACGTCCGCCACTGGGAAGCTCTATCCGACG 737001 Query 61184 GTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCA 61243 | || || ||| | || | | || ||||| |||||||| || || || ||| Sbjct 737002 GCGAGAGGCACTTCGTCTCGCACATCCTCGCCTTCTTCGCCGCTTCCGATGGAATTGTCC 737061 Query 61244 ATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCT 61303 |||||| | | | | ||| | ||||||| || || | ||||| || |||| Sbjct 737062 TGGAGAATCTCGCCGGAAGGTTCATGAAGGAGGTCCAGGTCGCCGAGGCCCGCGCCTTCT 737121 Query 61304 ACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATA 61363 |||| |||||||| || || ||||| ||||||| ||||||||||| | || |||| | Sbjct 737122 ACGGGTTCCAGATCGCAATCGAGAACATCCACTCCGAGATGTACAGCCTCCTTCTCGAGA 737181 Query 61364 CGTACATCAGGGA-GCGGGCGGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCG 61422 ||||||||| ||| | | || | | | || | ||| | || ||||| || || || Sbjct 737182 CGTACATCAAGGATTCTGACGAGAAG-CACCGCCTCTTCCACGCGATCGACACCATCCC- 737239 Query 61423 GCGGTGAAGCG--GAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTACAT 61480 | | | ||| ||| || | |||||| | | |||||| | | | | || | Sbjct 737240 -CTGCGTCGCGAAGAAGGCCCAGTGGGCCCTGAGATGGATCGACGGCTCTGAGTCT---T 737295 Query 61481 TTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTG 61540 | | || ||| | |||| ||||| || || || | || ||| ||| ||| Sbjct 737296 TCGCGGAGCGAATCGTGGCCTTTGCCTGCGTGGAAGGGATTTTCTTCTCTGGGAGTTTTT 737355 Query 61541 CCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGT 61600 ||| || |||||| | || || || || | ||||| || ||||| ||| || ||| Sbjct 737356 GCGCGATATTTTGGCTAAAAAAGCGCGGTTTAATGCCGGGACTGACTTTCTCGAACGAGC 737415 Query 61601 TGATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATC 61660 |||| ||||| ||||||||| |||| || || || || |||||| | | ||||| | Sbjct 737416 TGATCTCACGAGACGAGGGCTTGCACTGCGACTTCGCGTGTTTGCTGT--ACTCGCTA-C 737472 Query 61661 TGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCG 61720 || | | | | ||||| || | ||| ||||| | ||||| |||| Sbjct 737473 TGAGGCAGAAGCTGAGCGAGGATCGGATAAAGTCGATAGTTCGGAACGCGGTGGAGATCG 737532 Query 61721 AACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAA 61780 | |||| || || ||||| |||| | | || | || ||||| ||| || | Sbjct 737533 AGAAGGAGTTCGTGTGCGACGCGCTGCCTTGCGCCCTGGTGGGGATGAACGGTGATCTGA 737592 Query 61781 TGTCGCA-GTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGATTTGGGTATGAAGCGG 61839 || ||| || || || || || || || || ||| ||| || ||||| || | | | Sbjct 737593 TG-AGCACCTACATCGAGTTCGTCGCAGATCGGCTGCTGGGCGCGTTGGG-AT-ACGGGA 737649 Query 61840 ATCTATAATACG--AAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGA 61897 | | || ||| | ||||| || |||| ||||| |||| || | || |||| Sbjct 737650 AAATGTACAACGTCCAGAACCCTTTCGATTGGATGGAGCTGATCAGCCTCCAGGGGAAGA 737709 Query 61898 CGAATTTTTTCGAGAAACGTGTAGGCGACTATCA 61931 | || || ||||||||||| || ||||| || || Sbjct 737710 CCAACTTCTTCGAGAAACGCGTCGGCGAGTACCA 737743 >seq1241 Length=4265459 Score = 159 bits (176), Expect = 3e-34 Identities = 574/876 (66%), Gaps = 22/876 (3%) Strand=Plus/Minus Query 61064 TGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCT 61123 |||| || ||| |||| ||| || ||| |||||||| ||||| || || ||||||| Sbjct 520351 TGTTTCCGATCCAGTACCCGGAAATCTGGGAAATGTACAAGAAGGCCGAGGCCTCCTTCT 520292 Query 61124 GGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAGCGTTTATCGAGCG 61183 |||| | ||||||||||| | | | | ||||| |||||||| |||| || Sbjct 520291 GGACCGCCGAGGAGGTCGACCTATGCCAGGACATCCGCCACTGGGAGGCCCTATCCGACG 520232 Query 61184 GTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCA 61243 | || || ||| | || | | || ||||| || || || ||||| |||||| Sbjct 520231 GCGAGAGGCACTTCGTCTCGCACATTCTCGCCTTCTTCGCTGCCTCCGACGGCATCGTCC 520172 Query 61244 ATGAGAATTTAT-TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTC 61302 ||||||| | ||| | |||| | ||||||| || || | ||||| || ||| Sbjct 520171 TTGAGAATCTCGCTGGGAGGTTTAT-GAAGGAGGTCCAGGTCGCCGAGGCCCGCGCCTTC 520113 Query 61303 TACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGAT 61362 ||||| |||||||| ||||| ||||| ||||||| ||||||||||| | || |||| Sbjct 520112 TACGGGTTCCAGATAGCCATTGAGAACATCCACTCCGAGATGTACAGCCTCCTTCTCGAG 520053 Query 61363 ACGTACATCAGGGA-GCGGGCGGAACGTGAACGATTGTTCAATGCCATCGAGACGATACC 61421 |||||||||| ||| | | || | | | || | ||| | || ||||| || || || Sbjct 520052 ACGTACATCAAGGACTCCGACGAGAAG-CACCGCCTCTTCCACGCGATCGACACCATCCC 519994 Query 61422 GGCGGTGAAGCG--GAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTACA 61479 | | | ||| ||| || | |||||| | | |||||| | | | || | | Sbjct 519993 --CTGCGTCGCGAAGAAGGCCCAGTGGGCCCTGAGATGGATCGACGG--CTCCGAGT-CT 519939 Query 61480 TTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTC-AGTGGATCGTT 61538 || | || ||| | |||| ||||| || ||||| | || ||| | ||| | Sbjct 519938 TTCGCGGAGCGAATCGTGGCCTTTGCCTGCGTGGAGGGGATTTTCTTCTCGGGGAGTTTC 519879 Query 61539 TGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGA 61598 || ||| || |||||| | || || || || | ||||| || ||||| ||| ||| || Sbjct 519878 TG-CGCGATATTTTGGCTTAAAAAGCGCGGTTTAATGCCGGGACTGACTTTCTCCAACGA 519820 Query 61599 GTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTA 61658 |||| || || ||||||||| |||| || || || || |||||| | | |||| Sbjct 519819 ACTGATCTCGCGAGACGAGGGCTTGCACTGCGACTTCGCGTGTTTGCTGT--ACTCGCT- 519763 Query 61659 TCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTAT 61718 ||| ||| | | ||||| || || ||| || || | ||||| || Sbjct 519762 GCTGAGGAAGAAGCTGAGCGAGGATCGGGTTAAGTCGATCGTACGGAACGCGGTGGAGAT 519703 Query 61719 CGAACAGGAATTTCTGACTGACGCTTTGCCCGTCT-CACTCATCGGCATGAATTGTGGAC 61777 ||| ||| || || ||||| || |||| | | || | || ||||| | | | Sbjct 519702 CGAGAGGGAGTTCGTGTGCGACGCGCTG-CCGTGTGCGCTGGTGGGTATGAACGGCGATC 519644 Query 61778 TAATGTCGCA-GTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGATTTGGGTATGAAG 61836 | ||| ||| ||| || || || || || || || ||| ||| | ||||| || | Sbjct 519643 TGATG-GGCACGTACATCGAGTTCGTGGCGGATCGGCTGCTGGGCTCGTTGGG-ATACGG 519586 Query 61837 C-GGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAA 61895 | ||| || ||| | ||||| || |||| ||||| |||| ||| | || || Sbjct 519585 CAAGATGTACAATGTCCAGAACCCGTTCGATTGGATGGAGCTGATCAGCCTGCAGGGGAA 519526 Query 61896 GACGAATTTTTTCGAGAAACGTGTAGGCGACTATCA 61931 ||| || || || ||||| || || ||||| ||||| Sbjct 519525 GACCAACTTCTTYGAGAAGCGCGTCGGCGAGTATCA 519490 >seq855 Length=4499644 Score = 158 bits (174), Expect = 1e-33 Identities = 394/585 (67%), Gaps = 14/585 (2%) Strand=Plus/Minus Query 61064 TGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCT 61123 |||| || ||| |||| ||| || ||| |||||||| ||||| || || ||||||| Sbjct 754457 TGTTTCCGATCCAGTACCCGGAAATCTGGGAAATGTACAAGAAGGCCGAGGCCTCCTTCT 754398 Query 61124 GGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAGCGTTTATCGAGCG 61183 |||| | ||||||||||| | | | | ||||| |||||||| |||| || Sbjct 754397 GGACCGCCGAGGAGGTCGACCTATGCCAGGACATCCGCCACTGGGAGGCCCTATCCGACG 754338 Query 61184 GTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCA 61243 | || || ||| | || | | || ||||| || || || ||||| |||||| Sbjct 754337 GCGAGAGGCACTTCGTCTCGCACATTCTCGCCTTCTTCGCTGCCTCCGACGGCATCGTCC 754278 Query 61244 ATGAGAATTTAT-TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTC 61302 ||||||| | ||| | |||| | ||||||| || || | ||||| || ||| Sbjct 754277 TTGAGAATCTCGCTGGGAGGTTTAT-GAAGGAGGTCCAGGTCGCCGAGGCCCGCGCCTTC 754219 Query 61303 TACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGAT 61362 ||||| |||||||| ||||| ||||| ||||||| ||||||||||| | || |||| Sbjct 754218 TACGGGTTCCAGATAGCCATTGAGAACATCCACTCCGAGATGTACAGCCTCCTTCTCGAG 754159 Query 61363 ACGTACATCAGGGA-GCGGGCGGAACGTGAACGATTGTTCAATGCCATCGAGACGATACC 61421 |||||||||| ||| | | || | | | || | ||| | || ||||| || || || Sbjct 754158 ACGTACATCAAGGACTCCGACGAGAAG-CACCGCCTCTTCCACGCGATCGACACCATCCC 754100 Query 61422 GGCGGTGAAGCG--GAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTACA 61479 | | | ||| ||| || | |||||| | | |||||| | | | || | | Sbjct 754099 --CTGCGTCGCGAAGAAGGCCCAGTGGGCCCTGAGATGGATCGACGG--CTCCGAGT-CT 754045 Query 61480 TTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTC-AGTGGATCGTT 61538 || | || ||| | |||| ||||| || ||||| | || ||| | ||| | Sbjct 754044 TTCGCGGAGCGAATCGTGGCCTTTGCCTGCGTGGAGGGGATTTTCTTCTCGGGGAGTTTC 753985 Query 61539 TGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGA 61598 || ||| || |||||| | || || || || | ||||| || ||||| ||| ||| || Sbjct 753984 TG-CGCGATATTTTGGCTTAAAAAGCGCGGTTTAATGCCGGGACTGACTTTCTCCAACGA 753926 Query 61599 GTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGC-TGTTT 61642 |||| || || ||||||||| |||| || || || || ||||| Sbjct 753925 ACTGATCTCGCGAGACGAGGGCTTGCACTGCGACTTCGCGTGTTT 753881 >seq439 Length=4537371 Score = 136 bits (150), Expect = 3e-27 Identities = 220/314 (70%), Gaps = 2/314 (1%) Strand=Plus/Minus Query 61064 TGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCT 61123 ||||||| ||| |||| || || ||| |||||||| ||||||||||| ||||||| Sbjct 763516 TGTTCCCGATCCAGTACCCTGAAATCTGGGAAATGTACAAGAAGGCGGAAGCCTCCTTCT 763457 Query 61124 GGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAGCGTTTATCGAGCG 61183 |||| | ||||||||||| | | | | ||| | ||||||| | |||| || Sbjct 763456 GGACAGCCGAGGAGGTCGACCTTTGCCAGGACGTCCGCCACTGGGAAGCTCTATCCGACG 763397 Query 61184 GTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCA 61243 | || || || | || | | || ||||| |||||||| || || || ||| Sbjct 763396 GCGAGAGGCACTTTGTCTCGCACATCCTCGCCTTCTTCGCCGCTTCCGATGGAATTGTCC 763337 Query 61244 ATGAGAAT-TTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTC 61302 |||||| || |||| ||| | | ||||||| || || | ||||| || ||| Sbjct 763336 TGGAGAATCTTGCCGGAAGGTT-CATGAAGGAGGTCCAGGTCGCCGAGGCCCGCGCCTTC 763278 Query 61303 TACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGAT 61362 ||||| |||||||| || || ||||| ||||||| ||||||||||| | || |||| Sbjct 763277 TACGGGTTCCAGATCGCAATCGAGAACATCCACTCCGAGATGTACAGCCTCCTTCTCGAG 763218 Query 61363 ACGTACATCAGGGA 61376 |||||||||| ||| Sbjct 763217 ACGTACATCAAGGA 763204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397561938454640