Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= NC_031906.1 Length=198190 Score E Sequences producing significant alignments: (Bits) Value seq9 232 8e-56 seq672 221 2e-52 seq1241 138 1e-27 seq13 129 7e-25 seq1081 104 3e-17 seq629 98.7 1e-15 seq8 98.7 1e-15 >seq9 Length=33717675 Score = 232 bits (256), Expect = 8e-56 Identities = 442/640 (69%), Gaps = 10/640 (2%) Strand=Plus/Plus Query 190116 TGGTACACCCACGGACTCGCAAGTAGTTACCTTGAGGGTGCTAATTTTCTTACAGCG--G 190173 ||||| ||||| || | |||||| || | || || |||| || |||| || | | Sbjct 26714189 TGGTATACCCATAGATTAGCAAGTTCCTATTTGGAAGGCTCTAACTT-CTTA-AGTGATG 26714246 Query 190174 CTGTGTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCT-ACTTTGGGGTCCTGAA 190232 | || || || || ||| || | | | || | |||| || | ||| |||||||||||| Sbjct 26714247 CAGTTTCCACTCCGGCTAATAGTTTAGCGCACT-TCTTGTTGTTACTATGGGGTCCTGAA 26714305 Query 190233 TCTCAAGGCGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGGCTTTTGTGGCGCTC 190292 | ||||| ||||| | ||| ||| | || | || | | ||||||| || || Sbjct 26714306 GCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCAGTCTATAGACTTTTGTTGCACTA 26714365 Query 190293 CACGGGGCTTTCGCTCTAATTGGATTCATGCTTCGTCAGTTTGAACTGGCACG-TCTCAT 190351 || || ||||||| ||||| || || ||| | ||||| ||||| || || || ||| | Sbjct 26714366 CATGGCGCTTTCGAACTAATAGGTTT-ATGTTACGTCAATTTGAGCTTGCTCGATCTGTT 26714424 Query 190352 CGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGT 190411 | | | |||| ||||| ||||| ||||| ||||| || |||||||| ||| || Sbjct 26714425 GAAT-TGTGACCTTGTAATGCAATTGCATTCTCCGGTCCAATTGCTGTTTT-GTTTCTGT 26714482 Query 190412 CTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTCTTCGCGCCATCCTTCGGTGTGGC 190471 || || || || || | ||||| || ||||||||||| || || || ||||| || Sbjct 26714483 ATTCCTAATTTATCCGTTAGGTCAGTCTAGTTGGTTCTTTGCACCTAGTTTTGGTGTAGC 26714542 Query 190472 AGCGATCTTCCGCTTCCTCCTCTTCTTGCAGGGCTTCCATAACTGGACGCTGAACCCCTT 190531 ||| || || | ||| ||||||| || ||||| || ||||| ||||| || ||||| || Sbjct 26714543 AGCTATATTTTGATTCATCCTCTTTTTYCAGGGGTTTCATAATTGGACACTAAACCCATT 26714602 Query 190532 CCACATGATGGGTGTTGCAGGTATCCTGGGAGGAGCACTACTGTCAGCAATCCATGGTGT 190591 || |||||||| |||| || | |||| | || | | | || || || |||| Sbjct 26714603 TCATATGATGGGAGTTGTTGGGGTGTTGGGCGCTGCTTTGTTATGCGCTATTCACGGTGC 26714662 Query 190592 GACTGTAGAGAATACTTTGTATGAAGATGGTGAACAAGCAAACACGTTTAAAGCATTCGA 190651 | || | |||||||| | || ||||||||| ||||| || || | ||| | Sbjct 26714663 TATCATAAAAAATACTTTATTTGGAGATGGTGATGGTGCAAATACATTCCGTGGTTTCAA 26714722 Query 190652 CTCTACACAAGAGGAAGAGACCTATTCGATGGTCACTGCCAACCGTTTCTGGTCTCAAAT 190711 | | || |||| ||||| || ||||| |||||||| | |||| || ||||| ||||| Sbjct 26714723 CCCAACTCAAGTTGAAGAAACTTATTCAATGGTCACCACTAACCRCTTTTGGTCCCAAAT 26714782 Query 190712 CTTTGGTGTTGCGTTCAGTAATAAGAGGTGGTTGCATTTC 190751 |||| | ||||| || ||||| | ||||| |||||| Sbjct 26714783 CTTTAGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTC 26714822 >seq672 Length=1945142 Score = 221 bits (244), Expect = 2e-52 Identities = 516/771 (67%), Gaps = 41/771 (5%) Strand=Plus/Minus Query 189987 TTTGACATCCTTGATGACTGGCTTA--AACGAGATCGCTTTGTCTTTGTGGGTTGGTCTG 190044 ||||| || | ||||||||| ||| || || | ||||| || ||||| ||||||||| Sbjct 1649958 TTTGATATTATGGATGACTGG-TTACGAAGGA-ACCGCTTCGTTTTTGTAGGTTGGTCTA 1649901 Query 190045 GATTACTTCTTTTTCCCACTGCTTATCTCGCAATTGGTGGCTGGCTTACTGGCACGACGT 190104 | | | || ||||| ||| ||| | || | || || ||| | || | | Sbjct 1649900 GCCAATTACTCTTTCCTTGTGCCTATTTYGCTTTAGGGGGTTGGTT----GGAA-----T 1649850 Query 190105 TTGCTACAAGCTGGTACACCCACGGACTCGCAAGTAGTTACCTTGAGGGTGCTAATTTTC 190164 || || ||||| ||||| || | |||||| || | || || ||| || | Sbjct 1649849 TT-----AATTTGGTATACCCATAGATTAGCAAGTTCCTATTTGGAAGGCTTTAACTT-C 1649796 Query 190165 TTACAGCG--GCTGTGTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCT-ACTTT 190221 ||| || | || || || || || ||| || | | | || | |||| || | ||| | Sbjct 1649795 TTA-AGTGATGCAGTTTCCACTCCGGCTAATAGTTTAGCGCACT-TCTTGTTGTTACTAT 1649738 Query 190222 GGGGTCCTGAATCTCAAGGCGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGGCTT 190281 ||||||||||| | ||||| ||||| | ||| ||| | || | || | | ||| Sbjct 1649737 GGGGTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCAGTCTATAGACTT 1649678 Query 190282 TTGTGGCGCTCCACGGGGCTTTCGCTCTAATTGGATTCATGCTTCGTCAGTTTGAACTGG 190341 |||| || || || || ||||||| ||||| || || ||| | ||||| ||||| || | Sbjct 1649677 TTGTTGCACTACATGGCGCTTTCGGACTAATAGGTTT-ATGTTACGTCAATTTGAGCTTG 1649619 Query 190342 CACG-TCTCATCGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTT 190400 | || ||| | | | | |||| ||||| ||||| ||||| ||||| || |||||| Sbjct 1649618 CTCGATCTGTTSAAT-TGTGACCTTRTAATGCAATTGCATTCTCCGGTCCAATTGCTGTT 1649560 Query 190401 TTTGTTAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTCTTCGCGCCATCC 190460 |||||| || || || || || | | ||||| || |||||||||| || || Sbjct 1649559 TTTGTTTCTGTATTCCTAATTTATCYRTTAGGTCAGTCTRGTTGGTTCTTTGCACCTAGT 1649500 Query 190461 TTCGGTGTGGCAGCGATCTTCCGCTTCCTCCTCTTCTTGCAGGGCTTCCATAACTGGACG 190520 || ||||| ||||| || || | ||| ||||||| || ||||| || ||||| ||||| Sbjct 1649499 TTTGGTGTAGCAGCTATATTTTGATTCATCCTCTTTTTYCAGGGGTTTCATAATTGGACA 1649440 Query 190521 CTGAACCCCTTCCACATGATGGGTGTTGCAGGTATCCTGGGAGGAGCACTACTGTCAGCA 190580 || ||||| || || |||||||| |||| || | |||| | || | | | || Sbjct 1649439 CTAAACCCATTTCATATGATGGGAGTTGTTGGGGTGTTGGGCGCTGCTYTGTTATGCGCT 1649380 Query 190581 ATCCATGGTGTGACTGTAGAGAATACTTTGTATGAAGATGGTGAACAAGCAAACACGTTT 190640 || || |||| | || | |||||||| | || |||||| ||| | | |||| Sbjct 1649379 ATTCACGGTGCTATCATARAAAATACTTTATTTGGAGATGGGGAA-----ATTCCGGTTT 1649325 Query 190641 AAAGCATTCGACTCTACACAAGAGGAAGAGACCTATTCGATGGTCACTGCCAACCGTTTC 190700 | || | || |||| ||||| || ||||| |||||||| | |||| || Sbjct 1649324 A---------ACCCAACTCAAGTTGAAGAAACTTATTCAATGGTCACCACTAACCRCTTT 1649274 Query 190701 TGGTCTCAAATCTTTGGTGTTGCGTTCAGTAATAAGAGGTGGTTGCATTTC 190751 ||||| ||||||||| | ||||| || ||||| | ||||| |||||| Sbjct 1649273 TGGTCCCAAATCTTTAGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTC 1649223 >seq1241 Length=4265459 Score = 138 bits (152), Expect = 1e-27 Identities = 239/342 (70%), Gaps = 8/342 (2%) Strand=Plus/Minus Query 188893 GGTTGGTTCGGTGTCCTGATGATCCCTACGCTTCTCGCTGCAACCATCTGC-TTCATCGT 188951 || ||||| ||||| ||||||||| ||| | | | ||||| |||| || || | Sbjct 4250727 GGATGGTTTGGTGTTTTGATGATCCTTACTTTATTGACCGCAACT-TCTGTATTTATTAT 4250669 Query 188952 CGCCTTTGTCGCTGCACCCCCTGTAGACATTGATGGCATCCGCGAACCCGTCGCTGGTTC 189011 || || | |||||||| || |||| |||||||| || || ||||| || |||| || Sbjct 4250668 TGCTTTCATTGCTGCACCTCCAATAGATATTGATGGTATTCGTGAACCTGTTTCTGGATC 4250609 Query 189012 ACTCATGTATGGAAACAACATCATCTCTGGTGCTGTTGTCCCTTCATCCAACGCAATTGG 189071 | | ||||||| ||| || || | | |||| || | ||| | || || || || Sbjct 4250608 TTTACTTTATGGAAGCAATATTATTTTTTGTGCCATTATTCCTACTTCTGCAGCTATAGG 4250549 Query 189072 TCTTCACTTCTACCCCATCTGGGAAGCCGCCTCACTCGATGAGTGGCTCTACAACGGTGG 189131 | | ||||| ||||| || |||||||| | || | ||||| ||| | ||||| ||||| Sbjct 4250548 TTTGCACTTTTACCCTATATGGGAAGCGACTTCTGTTGATGAATGGTTATACAATGGTGG 4250489 Query 189132 TCCTTTCCAACTGGTAGTCTTCCACTTCCTCATCGGCATCTACGC---CTACATGGGTCG 189188 ||||| | || | || | |||||| | | || | || || |||| ||||||| Sbjct 4250488 TCCTTATGAGCTAATTGTTCTACACTTCTTACTTGG--TGTA-GCTTGCTACGTGGGTCG 4250432 Query 189189 TGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCTTGGAT 189230 |||||||||||| || ||||| ||||| || |||||||| Sbjct 4250431 TGAGTGGGAACTTAGTTTTCGTCTGGGTATACGCCCTTGGAT 4250390 >seq13 Length=34719086 Score = 129 bits (142), Expect = 7e-25 Identities = 236/342 (69%), Gaps = 8/342 (2%) Strand=Plus/Plus Query 188893 GGTTGGTTCGGTGTCCTGATGATCCCTACGCTTCTCGCTGCAACCATCTGC-TTCATCGT 188951 || ||||| ||||| ||||||||| ||| | | | ||||| |||| || || | Sbjct 21513248 GGATGGTTTGGTGTTTTGATGATCCTTACTTTATTGACCGCAACT-TCTGTATTTATTAT 21513306 Query 188952 CGCCTTTGTCGCTGCACCCCCTGTAGACATTGATGGCATCCGCGAACCCGTCGCTGGTTC 189011 || || | ||||||| || |||| |||||||| || || ||||| || |||| || Sbjct 21513307 TGCTTTCATTRCTGCACCTCCAATAGATATTGATGGTATTCGTGAACCTGTTTCTGGATC 21513366 Query 189012 ACTCATGTATGGAAACAACATCATCTCTGGTGCTGTTGTCCCTTCATCCAACGCAATTGG 189071 | | ||||||| ||| || || | | |||| || | ||| | || || || || Sbjct 21513367 TTTACTTTATGGAAGCAATATTATTTTTTGTGCCATTATTCCTACTTCTGCAGCTATAGG 21513426 Query 189072 TCTTCACTTCTACCCCATCTGGGAAGCCGCCTCACTCGATGAGTGGCTCTACAACGGTGG 189131 | | ||||| ||||| || |||||||| | || | ||||| ||| | ||||| ||||| Sbjct 21513427 TTTGCACTTTTACCCTATATGGGAAGCGACTTCTGTTGATGAATGGTTATACAATGGTGG 21513486 Query 189132 TCCTTTCCAACTGGTAGTCTTCCACTTCCTCATCGGCATCTACGC---CTACATGGGTCG 189188 ||||| | || | || | |||||| | | || | || || |||| ||||||| Sbjct 21513487 TCCTTATGAGCTAATTGTTCTACACTTCTTACTTGG--TGTA-GCTTGCTACGTGGGTCG 21513543 Query 189189 TGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCTTGGAT 189230 |||||||||||| || ||| ||||| || |||||||| Sbjct 21513544 TGAGTGGGAACTTAGTTTTYKTCTGGGTATACGCCCTTGGAT 21513585 >seq1081 Length=585217 Score = 104 bits (114), Expect = 3e-17 Identities = 137/189 (72%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 190437 TCGAGTTGGTTCTTCGCGC-CATCCTTCGGTGTGGCAGCGATCTTCCGCTTCCTCCTCTT 190495 || ||||||||||| |||| || |||| ||||||||| || || | ||| ||||||| Sbjct 578917 TCTAGTTGGTTCTTTGCGCTCAATTTTCG-TGTGGCAGCTATATTTTGATTCATCCTCTT 578859 Query 190496 CTTGCAGGGCTTCCATAACTGGACGCTGAACCCCTTCCACATGATGGGTGTTGCAGGTAT 190555 || ||||| || ||||| || || ||||| || || |||||| | |||| || | Sbjct 578858 TTTCCAGGGGTTTCATAATTGAACATTGAACTYATTTCATATGATGAGAGTTGTTGGAGT 578799 Query 190556 CCTGGGAGGAGCACTACTGTCAGCAATCCATGGTGTGACTGTAGAGAATACTTTGTATGA 190615 |||| || || | | | || |||||||| |||||||| ||||||| | ||| Sbjct 578798 GTTGGGCACTGCTCTRTTATGCACTATTCATGGTGTTACTGTAGAAGATACTTTATTTGA 578739 Query 190616 AGATGGTGA 190624 ||||||||| Sbjct 578738 AGATGGTGA 578730 >seq629 Length=2291386 Score = 98.7 bits (108), Expect = 1e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 189502 AACTATGGTTACAAGTTTGGACAAGAAGAAGAAACGTACAACATCGTTGCTGCTCATGGA 189561 || || ||||||| ||||| ||||| |||||||| ||||| ||||| || |||||||| Sbjct 2030033 AATTACGGTTACAGATTTGGTCAAGAGGAAGAAACCTACAATATCGTAGCGGCTCATGGT 2029974 Query 189562 TATTTCGGTCGTCTTATCTTCCAATATGCATCGTTCAACAACTCCCGTTCACTTCACTTC 189621 ||||| || | | |||||||||||||| || |||||||| | ||| | |||||| Sbjct 2029973 TATTTTGGCTGATTGATCTTCCAATATGCTAGTTTGAACAACTCTCATTCTTTACACTTC 2029914 Query 189622 TT 189623 || Sbjct 2029913 TT 2029912 >seq8 Length=29603939 Score = 98.7 bits (108), Expect = 1e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 189502 AACTATGGTTACAAGTTTGGACAAGAAGAAGAAACGTACAACATCGTTGCTGCTCATGGA 189561 || || ||||||| ||||| ||||| |||||||| ||||| ||||| || |||||||| Sbjct 4091918 AATTACGGTTACAGATTTGGTCAAGAGGAAGAAACCTACAATATCGTAGCGGCTCATGGT 4091977 Query 189562 TATTTCGGTCGTCTTATCTTCCAATATGCATCGTTCAACAACTCCCGTTCACTTCACTTC 189621 ||||| || | | |||||||||||||| || |||||||| | ||| | |||||| Sbjct 4091978 TATTTTGGCTGATTGATCTTCCAATATGCTAGTTTGAACAACTCTCATTCTTTACACTTC 4092037 Query 189622 TT 189623 || Sbjct 4092038 TT 4092039 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634070084574000