Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10]
2,019 sequences; 582,117,524 total letters
Query= AAMG01000185.1
Length=266
Score E
Sequences producing significant alignments: (Bits) Value
seq1171 313 4e-83
seq17 275 9e-72
seq16 212 9e-53
seq11 89.7 8e-16
>seq1171
Length=10373
Score = 313 bits (346), Expect = 4e-83
Identities = 227/257 (88%), Gaps = 7/257 (3%)
Strand=Plus/Minus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
|||||||||| ||||||||| |||||||||||| |||||||| ||||||||||||| |
Sbjct 3870 GTACAAAGGGAAGGGACGTAATCAACGCGAGCT-GATGACTC---CTTACTAGGAATT-C 3816
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCA-CGATGAAATTTCAAAGATT 119
|| ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 3815 CTTGTTGAAGACCAACAATTGCAATGATCTATCCCCATCAACAATGAAATTTCAAAGATT 3756
Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179
| |||| |||||||||||||| ||| |||||||||||| |||| |||| ||||| | |
Sbjct 3755 ATCCGGGCCTGTCGGCCAAGGCTATAAACTCGTTGAATATATCAATGTAACGCGCATACA 3696
Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAA 239
||||| |||||||||||| ||||||||||||||||||||||||| || | |||| |||||
Sbjct 3695 GCCCAAAACATCTAAGGGTATCACAGACCTGTTATTGCCTCAAATTTTCTTGGCTTAAAA 3636
Query 240 GGCCAT-CTCCCTCGAA 255
|||||| |||||| ||
Sbjct 3635 GGCCATAGTCCCTCTAA 3619
>seq17
Length=27373735
Score = 275 bits (304), Expect = 9e-72
Identities = 217/256 (85%), Gaps = 3/256 (1%)
Strand=Plus/Minus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
|||||||||||| ||| |||| || ||||| | |||||||| |||||||||||||| |
Sbjct 6846031 GTACAAAGGGCAAGGATATAGTTAATGCGAGAT-GATGACTCATGCTTACTAGGAATT-C 6845974
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120
||| |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 6845973 CTCATTGAAGACCAACAATTGCAATGATCTATCCTCATCATGATGAAATTTCAAAGATTA 6845914
Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180
|| | | ||||| |||||| ||| |||| |||||| ||||||||||| || | || ||
Sbjct 6845913 CCTGAGCATGTCGACCAAGGCTATAAACTCATTGAATGCATCAGTGTAGTGCACATGTGG 6845854
Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240
|||| ||||||||| || ||||||||||| |||||||||||||||| | | ||||||||
Sbjct 6845853 CCCACAACATCTAAAGGAATCACAGACCTATTATTGCCTCAAACTTTCTTAACCTAAAAG 6845794
Query 241 GCCAT-CTCCCTCGAA 255
| ||| |||||| ||
Sbjct 6845793 GTCATAATCCCTCTAA 6845778
>seq16
Length=28979753
Score = 212 bits (234), Expect = 9e-53
Identities = 184/226 (81%), Gaps = 2/226 (1%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
|||| ||| | |||||||||||||||| || || |||||||| | || ||||||||||
Sbjct 3712498 GTACTAAGAGTAGGGACGTAGTCAACGTGAACT-GATGACTCACTGTTGCTAGGAATTTT 3712556
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120
|| || |||||||||||||| || ||||||||| ||||| ||||||||||||| ||||
Sbjct 3712557 TTCATTAAAGACCAACAATTGTAACGATCTATCCT-ATCACCATGAAATTTCAAAAATTA 3712615
Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180
| ||||||||||||| | ||||||| |||||||| |||||| || ||||||| |
Sbjct 3712616 GCTAAGCCTGTCGGCCAAGATTATAGACTGGTTGAATATATCAGTATACTACGCGTGCAG 3712675
Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTT 226
|| | || || ||||||||||||| | |||||||| |||||||||
Sbjct 3712676 CCTAAAATATTTAAGGGCATCACAAATATGTTATTGTCTCAAACTT 3712721
>seq11
Length=27369018
Score = 89.7 bits (98), Expect = 8e-16
Identities = 66/76 (87%), Gaps = 6/76 (8%)
Strand=Plus/Plus
Query 43 GCGCTTACTAGGAATTTCCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACG 102
|| ||||||||||||| |||||||||||| |||||||| |||||||||||| |||
Sbjct 25562174 GCACTTACTAGGAATT-CCTCGTTGAAGATCAACAATTCCAATGATCTATCTCCA----- 25562227
Query 103 ATGAAATTTCAAAGAT 118
||||||||||||||||
Sbjct 25562228 ATGAAATTTCAAAGAT 25562243
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 751985291585
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |