Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq1171 313 4e-83 seq17 275 9e-72 seq16 212 9e-53 seq11 89.7 8e-16 >seq1171 Length=10373 Score = 313 bits (346), Expect = 4e-83 Identities = 227/257 (88%), Gaps = 7/257 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||| ||||||||| |||||||||||| |||||||| ||||||||||||| | Sbjct 3870 GTACAAAGGGAAGGGACGTAATCAACGCGAGCT-GATGACTC---CTTACTAGGAATT-C 3816 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCA-CGATGAAATTTCAAAGATT 119 || ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| Sbjct 3815 CTTGTTGAAGACCAACAATTGCAATGATCTATCCCCATCAACAATGAAATTTCAAAGATT 3756 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 | |||| |||||||||||||| ||| |||||||||||| |||| |||| ||||| | | Sbjct 3755 ATCCGGGCCTGTCGGCCAAGGCTATAAACTCGTTGAATATATCAATGTAACGCGCATACA 3696 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAA 239 ||||| |||||||||||| ||||||||||||||||||||||||| || | |||| ||||| Sbjct 3695 GCCCAAAACATCTAAGGGTATCACAGACCTGTTATTGCCTCAAATTTTCTTGGCTTAAAA 3636 Query 240 GGCCAT-CTCCCTCGAA 255 |||||| |||||| || Sbjct 3635 GGCCATAGTCCCTCTAA 3619 >seq17 Length=27373735 Score = 275 bits (304), Expect = 9e-72 Identities = 217/256 (85%), Gaps = 3/256 (1%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||| ||| |||| || ||||| | |||||||| |||||||||||||| | Sbjct 6846031 GTACAAAGGGCAAGGATATAGTTAATGCGAGAT-GATGACTCATGCTTACTAGGAATT-C 6845974 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 ||| |||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| Sbjct 6845973 CTCATTGAAGACCAACAATTGCAATGATCTATCCTCATCATGATGAAATTTCAAAGATTA 6845914 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 || | | ||||| |||||| ||| |||| |||||| ||||||||||| || | || || Sbjct 6845913 CCTGAGCATGTCGACCAAGGCTATAAACTCATTGAATGCATCAGTGTAGTGCACATGTGG 6845854 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240 |||| ||||||||| || ||||||||||| |||||||||||||||| | | |||||||| Sbjct 6845853 CCCACAACATCTAAAGGAATCACAGACCTATTATTGCCTCAAACTTTCTTAACCTAAAAG 6845794 Query 241 GCCAT-CTCCCTCGAA 255 | ||| |||||| || Sbjct 6845793 GTCATAATCCCTCTAA 6845778 >seq16 Length=28979753 Score = 212 bits (234), Expect = 9e-53 Identities = 184/226 (81%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||| ||| | |||||||||||||||| || || |||||||| | || |||||||||| Sbjct 3712498 GTACTAAGAGTAGGGACGTAGTCAACGTGAACT-GATGACTCACTGTTGCTAGGAATTTT 3712556 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 || || |||||||||||||| || ||||||||| ||||| ||||||||||||| |||| Sbjct 3712557 TTCATTAAAGACCAACAATTGTAACGATCTATCCT-ATCACCATGAAATTTCAAAAATTA 3712615 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 | ||||||||||||| | ||||||| |||||||| |||||| || ||||||| | Sbjct 3712616 GCTAAGCCTGTCGGCCAAGATTATAGACTGGTTGAATATATCAGTATACTACGCGTGCAG 3712675 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTT 226 || | || || ||||||||||||| | |||||||| ||||||||| Sbjct 3712676 CCTAAAATATTTAAGGGCATCACAAATATGTTATTGTCTCAAACTT 3712721 >seq11 Length=27369018 Score = 89.7 bits (98), Expect = 8e-16 Identities = 66/76 (87%), Gaps = 6/76 (8%) Strand=Plus/Plus Query 43 GCGCTTACTAGGAATTTCCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACG 102 || ||||||||||||| |||||||||||| |||||||| |||||||||||| ||| Sbjct 25562174 GCACTTACTAGGAATT-CCTCGTTGAAGATCAACAATTCCAATGATCTATCTCCA----- 25562227 Query 103 ATGAAATTTCAAAGAT 118 |||||||||||||||| Sbjct 25562228 ATGAAATTTCAAAGAT 25562243 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751985291585