Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10]
2,019 sequences; 582,117,524 total letters
Query= AAMG01000278.1
Length=318
Score E
Sequences producing significant alignments: (Bits) Value
seq7 235 1e-59
seq17 176 8e-42
seq1171 140 6e-31
seq10 140 6e-31
seq3 104 4e-20
>seq7
Length=27069033
Score = 235 bits (260), Expect = 1e-59
Identities = 204/249 (82%), Gaps = 3/249 (1%)
Strand=Plus/Minus
Query 71 ACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGA-ATACATTAGCA 129
||| |||||||||| |||||||||||||||||||| | || ||||| |||||||||||
Sbjct 13780068 ACTGTTACTTTGAAGAAATTAGAGTGTTCAAAGCAAGTCTACGCTCGGTATACATTAGCA 13780009
Query 130 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGA 189
| | |||| | |||||| | |||| |||||||||||| | ||| || |||||||
Sbjct 13780008 TAGGATAACATCATAGGATTT-CGGTCCTATTTTGTTGGCCTTCGGGATCGGAGTAATGA 13779950
Query 190 TTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTA 249
|||| ||||||||||||||| | ||||| || |||| ||||||||||||||||||||
Sbjct 13779949 TTAACAGGGATAGTCGGGGGCATTTGTATTTCATAGTCAAAGGTGAAATTCTTGGATTTA 13779890
Query 250 TTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAA 309
| ||||| ||| ||||||||||| || ||||| |||||||||||||||| |||||||
Sbjct 13779889 TGAAAGACGAACAACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCA-AGAACGAA 13779831
Query 310 AGTTAGGGG 318
|||| ||||
Sbjct 13779830 AGTTGGGGG 13779822
>seq17
Length=27373735
Score = 176 bits (194), Expect = 8e-42
Identities = 190/249 (76%), Gaps = 12/249 (5%)
Strand=Plus/Plus
Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGA-ATACATTAGCATGGA 133
|||||||||| ||||||||||| |||||| | |||| ||||| | |||||||||||| |
Sbjct 6845138 TTACTTTGAAGAAATTAGAGTGCTCAAAGTAAGCCTGTGCTCTAGATACATTAGCATAGG 6845197
Query 134 ATAA----TAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGA 189
|||| |||||| | | | || || | ||| | | || | |||||||
Sbjct 6845198 ATAACCCATAGAAT------TTTGTTCCTCTTGTTTTGACCTTTGCGATCAAAGTAATGA 6845251
Query 190 TTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTA 249
|||||||||| |||| | ||| | || | || ||||||||| |||||||||||| ||
Sbjct 6845252 TTAATAGGGACAGTCAGCGGTATTCATAGTTCATAGTCAGAGGTAAAATTCTTGGATCTA 6845311
Query 250 TTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAA 309
| |||| ||| ||||| ||||| || ||||||||||||||||||||||| |||||||
Sbjct 6845312 TGAAAGATGAACAACTGCAAAAGCATTTACCAAGGATGTTTTCATTAATCA-AGAACGAA 6845370
Query 310 AGTTAGGGG 318
|||||||||
Sbjct 6845371 AGTTAGGGG 6845379
>seq1171
Length=10373
Score = 140 bits (154), Expect = 6e-31
Identities = 185/248 (75%), Gaps = 8/248 (3%)
Strand=Plus/Plus
Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCATGGA 133
|||||||||| |||||||| | | |||||| |||| ||| | |||||||||||||||
Sbjct 2979 TTACTTTGAAGAAATTAGAATACTTAAAGCAAGCCTACACTCTGTATACATTAGCATGGA 3038
Query 134 ATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGT-TTCTAGGACCGCCGTAATGATTA 192
|||| | |||||| | | | |||| | |||| ||| || | ||||||||||
Sbjct 3039 ATAACATCATAGGATTT-CATTCTTATTCTATTGGCCTTCGAGATTAGA-GTAATGATTA 3096
Query 193 ATAGGGATAGTC--GGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250
| | ||| ||| |||| || ||||| || ||||||||| ||||| || |||||||
Sbjct 3097 ACATGGACAGTTAAGGGGCAATC-GTATTTCATAGTCAGAGGTAAAATTTTTCGATTTAT 3155
Query 251 TGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAA 310
||| | ||| ||| ||||||| || |||| || ||||||||||||| ||||||||
Sbjct 3156 GAAAGGCGAACAACTACGAAAGCATTTGCCAAAGAGTTTTTCATTAATCA-AGAACGAAA 3214
Query 311 GTTAGGGG 318
||| ||||
Sbjct 3215 GTTGGGGG 3222
>seq10
Length=26335333
Score = 140 bits (154), Expect = 6e-31
Identities = 106/125 (85%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 175 GGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTG 234
||| || ||||||||||| ||||| ||||||||| | ||||| || ||||||||||
Sbjct 18283226 GGATCGGAGTAATGATTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTG 18283285
Query 235 AAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCAT 294
|||||||||||||||| ||||| ||| ||||||||||| || ||||||||||||||||
Sbjct 18283286 AAATTCTTGGATTTATGAAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCAT 18283345
Query 295 TAATC 299
|||||
Sbjct 18283346 TAATC 18283350
>seq3
Length=29412403
Score = 104 bits (114), Expect = 4e-20
Identities = 95/120 (79%), Gaps = 0/120 (0%)
Strand=Plus/Minus
Query 157 CTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGT 216
||||| |||||| || | | || ||||||||||||||||| |||||||| | ||
Sbjct 5188399 CTATTCTGTTGGCTTTCGGAATCGGAGTAATGATTAATAGGGACAGTCGGGGACATTCGT 5188340
Query 217 ATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTT 276
||| | |||| ||||||||||||||||||||| ||||| ||| ||||||||||| ||
Sbjct 5188339 ATTTCACAGTCAAAGGTGAAATTCTTGGATTTATGAAAGACGAACAACTGCGAAAGCATT 5188280
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 915181522112
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |