Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq7 235 1e-59 seq17 176 8e-42 seq1171 140 6e-31 seq10 140 6e-31 seq3 104 4e-20 >seq7 Length=27069033 Score = 235 bits (260), Expect = 1e-59 Identities = 204/249 (82%), Gaps = 3/249 (1%) Strand=Plus/Minus Query 71 ACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGA-ATACATTAGCA 129 ||| |||||||||| |||||||||||||||||||| | || ||||| ||||||||||| Sbjct 13780068 ACTGTTACTTTGAAGAAATTAGAGTGTTCAAAGCAAGTCTACGCTCGGTATACATTAGCA 13780009 Query 130 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGA 189 | | |||| | |||||| | |||| |||||||||||| | ||| || ||||||| Sbjct 13780008 TAGGATAACATCATAGGATTT-CGGTCCTATTTTGTTGGCCTTCGGGATCGGAGTAATGA 13779950 Query 190 TTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTA 249 |||| ||||||||||||||| | ||||| || |||| |||||||||||||||||||| Sbjct 13779949 TTAACAGGGATAGTCGGGGGCATTTGTATTTCATAGTCAAAGGTGAAATTCTTGGATTTA 13779890 Query 250 TTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAA 309 | ||||| ||| ||||||||||| || ||||| |||||||||||||||| ||||||| Sbjct 13779889 TGAAAGACGAACAACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCA-AGAACGAA 13779831 Query 310 AGTTAGGGG 318 |||| |||| Sbjct 13779830 AGTTGGGGG 13779822 >seq17 Length=27373735 Score = 176 bits (194), Expect = 8e-42 Identities = 190/249 (76%), Gaps = 12/249 (5%) Strand=Plus/Plus Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGA-ATACATTAGCATGGA 133 |||||||||| ||||||||||| |||||| | |||| ||||| | |||||||||||| | Sbjct 6845138 TTACTTTGAAGAAATTAGAGTGCTCAAAGTAAGCCTGTGCTCTAGATACATTAGCATAGG 6845197 Query 134 ATAA----TAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGA 189 |||| |||||| | | | || || | ||| | | || | ||||||| Sbjct 6845198 ATAACCCATAGAAT------TTTGTTCCTCTTGTTTTGACCTTTGCGATCAAAGTAATGA 6845251 Query 190 TTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTA 249 |||||||||| |||| | ||| | || | || ||||||||| |||||||||||| || Sbjct 6845252 TTAATAGGGACAGTCAGCGGTATTCATAGTTCATAGTCAGAGGTAAAATTCTTGGATCTA 6845311 Query 250 TTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAA 309 | |||| ||| ||||| ||||| || ||||||||||||||||||||||| ||||||| Sbjct 6845312 TGAAAGATGAACAACTGCAAAAGCATTTACCAAGGATGTTTTCATTAATCA-AGAACGAA 6845370 Query 310 AGTTAGGGG 318 ||||||||| Sbjct 6845371 AGTTAGGGG 6845379 >seq1171 Length=10373 Score = 140 bits (154), Expect = 6e-31 Identities = 185/248 (75%), Gaps = 8/248 (3%) Strand=Plus/Plus Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCATGGA 133 |||||||||| |||||||| | | |||||| |||| ||| | ||||||||||||||| Sbjct 2979 TTACTTTGAAGAAATTAGAATACTTAAAGCAAGCCTACACTCTGTATACATTAGCATGGA 3038 Query 134 ATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGT-TTCTAGGACCGCCGTAATGATTA 192 |||| | |||||| | | | |||| | |||| ||| || | |||||||||| Sbjct 3039 ATAACATCATAGGATTT-CATTCTTATTCTATTGGCCTTCGAGATTAGA-GTAATGATTA 3096 Query 193 ATAGGGATAGTC--GGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250 | | ||| ||| |||| || ||||| || ||||||||| ||||| || ||||||| Sbjct 3097 ACATGGACAGTTAAGGGGCAATC-GTATTTCATAGTCAGAGGTAAAATTTTTCGATTTAT 3155 Query 251 TGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAA 310 ||| | ||| ||| ||||||| || |||| || ||||||||||||| |||||||| Sbjct 3156 GAAAGGCGAACAACTACGAAAGCATTTGCCAAAGAGTTTTTCATTAATCA-AGAACGAAA 3214 Query 311 GTTAGGGG 318 ||| |||| Sbjct 3215 GTTGGGGG 3222 >seq10 Length=26335333 Score = 140 bits (154), Expect = 6e-31 Identities = 106/125 (85%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 175 GGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTG 234 ||| || ||||||||||| ||||| ||||||||| | ||||| || |||||||||| Sbjct 18283226 GGATCGGAGTAATGATTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTG 18283285 Query 235 AAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCAT 294 |||||||||||||||| ||||| ||| ||||||||||| || |||||||||||||||| Sbjct 18283286 AAATTCTTGGATTTATGAAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCAT 18283345 Query 295 TAATC 299 ||||| Sbjct 18283346 TAATC 18283350 >seq3 Length=29412403 Score = 104 bits (114), Expect = 4e-20 Identities = 95/120 (79%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 157 CTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGT 216 ||||| |||||| || | | || ||||||||||||||||| |||||||| | || Sbjct 5188399 CTATTCTGTTGGCTTTCGGAATCGGAGTAATGATTAATAGGGACAGTCGGGGACATTCGT 5188340 Query 217 ATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTT 276 ||| | |||| ||||||||||||||||||||| ||||| ||| ||||||||||| || Sbjct 5188339 ATTTCACAGTCAAAGGTGAAATTCTTGGATTTATGAAAGACGAACAACTGCGAAAGCATT 5188280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915181522112