Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10]
2,019 sequences; 582,117,524 total letters
Query= AAMG01000304.1
Length=683
Score E
Sequences producing significant alignments: (Bits) Value
seq4 230 1e-57
seq1 174 7e-41
seq10 161 4e-37
seq7 141 4e-31
>seq4
Length=28735499
Score = 230 bits (254), Expect = 1e-57
Identities = 223/281 (79%), Gaps = 7/281 (2%)
Strand=Plus/Minus
Query 407 GCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTC-AAA 465
|||||||||| |||| |||||||||||||| |||| | ||||||| ||| | |||
Sbjct 6052396 GCCCGTCTTGAAACATGGACCAAGGAGTCTGACATGTGTGCGAGTCAACGGGCGAGTAAA 6052337
Query 466 CCCGTGCG-CGTAATGAAAGTGAACGGAGGTGGGAACCCGT-GAGGGT-GCACCATCGAC 522
||||| | || || ||| ||| || || || ||| | |||||| |||||||||||
Sbjct 6052336 CCCGTAAGGCGCAAGGAAGCTGACTGGCGG---GATCCCCTCGAGGGTTGCACCATCGAC 6052280
Query 523 CGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATG 582
||| | ||| | | || | || |||| ||||||| ||||||||||||||||||||
Sbjct 6052279 CGACCTCGATCTTCTGAGAAAGGTTCGAGTGAGAGCATGCCTGTTGGGACCCGAAAGATG 6052220
Query 583 GTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTT 642
||||||||||||||| ||| ||||||||||||||||||||||||||| |||||| |
Sbjct 6052219 GTGAACTATGCCTGAGCGGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCCCGCAGCAATA 6052160
Query 643 CTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683
||| ||||||||||| ||||| | ||||||||||||||||
Sbjct 6052159 CTGACGTGCAAATCGTTCGTCTGACTTGGGTATAGGGGCGA 6052119
Score = 138 bits (152), Expect = 5e-30
Identities = 126/159 (79%), Gaps = 0/159 (0%)
Strand=Plus/Minus
Query 39 CGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAA 98
||||| | |||||||||||||||| | | || ||| |||||||| | || || ||||||
Sbjct 6052782 CGAGTTGGGTTGTTTGGGAATGCATCCCCAATCGGGCGGTAAATTCCGTCCAAGGCTAAA 6052723
Query 99 TATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158
|| || |||||||||||||| ||||||| || ||||||||||||| |||||| |
Sbjct 6052722 TACGGGTGAGAGACCGATAGCGAACAAGTACCACGAGGGAAAGATGAAAAGGACTTTGAA 6052663
Query 159 AAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAG 197
|||||||| ||| || | ||||||||| | |||||||
Sbjct 6052662 AAGAGAGTCAAAGAGTGCTTGAAATTGTCGGGAGGGAAG 6052624
>seq1
Length=34959721
Score = 174 bits (192), Expect = 7e-41
Identities = 211/283 (75%), Gaps = 7/283 (2%)
Strand=Plus/Plus
Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAA 464
|||| ||||||| |||| |||||||||||||| |||| | ||||||| ||| | |
Sbjct 5042708 CGGCTCGTCTTGAAACATGGACCAAGGAGTCTGACATGTGTGCGAGTCAACGGGCGAGTA 5042767
Query 465 A-CCCGTGCG-CGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGG--TGCACCATCG 520
| ||| | | || || || | || || ||||| ||| | | || |||||| |
Sbjct 5042768 AGCCCATAAGGCGCAAGTAAGCTCAATGG---TGGGATCCCCTCAAGGGTTGCACCTTTA 5042824
Query 521 ACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGA 580
| ||| | ||| | | || || ||||||| ||||||| |||| |||||| ||||||
Sbjct 5042825 ATCGACCTCGATCTTCTGAGAAGGGTTTGAGTGAGAGCATGCCTGTCGGGACCTGAAAGA 5042884
Query 581 TGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGG 640
||||||||||||||||| | || ||||| ||||||||||||||||||||| |||| |
Sbjct 5042885 TGGTGAACTATGCCTGAGCATGGCGAAGCTAGAGGAAACTCTGGTGGAGGCCTGCAGTGA 5042944
Query 641 TTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683
| ||| || ||||||| | ||| | ||||||||||||||||
Sbjct 5042945 TACTGACGGGCAAATCTTTTGTCTGACTTGGGTATAGGGGCGA 5042987
Score = 132 bits (146), Expect = 2e-28
Identities = 124/158 (78%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99
|||||| |||||||||||||||||| |||| | | |||||||| | | || |||||||
Sbjct 5042371 GAGTCGGGTTGTTTGGGAATGCAGCCCTAATCGAGCGGTAAATTCCGTTCAAGGCTAAAT 5042430
Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159
| || ||||||| |||||| | ||||| |||| ||||||||||||| |||||| |
Sbjct 5042431 ACATGCGAGAGACCAATAGCGAATAAGTACCGTGAAGGAAAGATGAAAAGGACTTTGAAG 5042490
Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAG 197
||| ||| ||| || | ||||||||| | |||||||
Sbjct 5042491 AGAAAGTCAAAGAGTGCTTGAAATTGTCGGGAGGGAAG 5042528
>seq10
Length=26335333
Score = 161 bits (178), Expect = 4e-37
Identities = 209/280 (75%), Gaps = 9/280 (3%)
Strand=Plus/Plus
Query 409 CCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTC-AAACC 467
||||| || |||||||||||||||||||||||| | ||| ||| ||| | |||||
Sbjct 18113234 CCGTCATGAAACACGGACCAAGGAGTCTAACATGTGTGCTAGTCAACGGGCGAGTAAACC 18113293
Query 468 CGTGCG-CGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGT-GCACCATCGACCGA 525
||| | || |||||| ||| | || || || |||||| ||||| ||| |||
Sbjct 18113294 CGTAAGGCGCAATGAAGCTGACTAGCGG--GGTCTCCTCGAGGGTTGCACCTCCGATCGA 18113351
Query 526 TCCTGATGTCTTCGGAT--GGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGG 583
||| | ||||| || || ||| ||||||| ||| ||||||||||||| |
Sbjct 18113352 -CCTCAA-TCTTCTGAGAAGGGGACAAGTGAGAGCATGCCTGCCAGGACCCGAAAGATAG 18113409
Query 584 TGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTC 643
|||||||||||||| | ||| |||||||||| |||||||||||||||| ||||||| | |
Sbjct 18113410 TGAACTATGCCTGAGTGGGGCGAAGCCAGAGAAAACTCTGGTGGAGGCCCGCAGCGATAC 18113469
Query 644 TGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683
| |||||||| | || | | ||||||||||||||||
Sbjct 18113470 TAATGTGCAAATAGTTCTTGTGACTTGGGTATAGGGGCGA 18113509
>seq7
Length=27069033
Score = 141 bits (156), Expect = 4e-31
Identities = 128/161 (80%), Gaps = 0/161 (0%)
Strand=Plus/Minus
Query 39 CGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAA 98
||||||| |||||||| |||||||| | || || |||||||| | || || ||||||
Sbjct 3255353 CGAGTCGGGTTGTTTGAAAATGCAGCCCAAATCAGGCGGTAAATTCCGTCCAAGGCTAAA 3255294
Query 99 TATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158
|| | | |||||||||||||| ||||||| |||| ||||||| ||||| | |||| |
Sbjct 3255293 TACGGACGAGAGACCGATAGCGAACAAGTACGGTGAGGGAAAGATAAAAAGGATTTTGAA 3255234
Query 159 AAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199
|||||||| ||| || | ||||||| | ||||||||||||
Sbjct 3255233 AAGAGAGTCAAAGAGTATTTGAAATTATCGAAAGGGAAGCG 3255193
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 2079956692450
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |