Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq4 230 1e-57 seq1 174 7e-41 seq10 161 4e-37 seq7 141 4e-31 >seq4 Length=28735499 Score = 230 bits (254), Expect = 1e-57 Identities = 223/281 (79%), Gaps = 7/281 (2%) Strand=Plus/Minus Query 407 GCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTC-AAA 465 |||||||||| |||| |||||||||||||| |||| | ||||||| ||| | ||| Sbjct 6052396 GCCCGTCTTGAAACATGGACCAAGGAGTCTGACATGTGTGCGAGTCAACGGGCGAGTAAA 6052337 Query 466 CCCGTGCG-CGTAATGAAAGTGAACGGAGGTGGGAACCCGT-GAGGGT-GCACCATCGAC 522 ||||| | || || ||| ||| || || || ||| | |||||| ||||||||||| Sbjct 6052336 CCCGTAAGGCGCAAGGAAGCTGACTGGCGG---GATCCCCTCGAGGGTTGCACCATCGAC 6052280 Query 523 CGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATG 582 ||| | ||| | | || | || |||| ||||||| |||||||||||||||||||| Sbjct 6052279 CGACCTCGATCTTCTGAGAAAGGTTCGAGTGAGAGCATGCCTGTTGGGACCCGAAAGATG 6052220 Query 583 GTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTT 642 ||||||||||||||| ||| ||||||||||||||||||||||||||| |||||| | Sbjct 6052219 GTGAACTATGCCTGAGCGGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCCCGCAGCAATA 6052160 Query 643 CTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||| ||||||||||| ||||| | |||||||||||||||| Sbjct 6052159 CTGACGTGCAAATCGTTCGTCTGACTTGGGTATAGGGGCGA 6052119 Score = 138 bits (152), Expect = 5e-30 Identities = 126/159 (79%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 39 CGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAA 98 ||||| | |||||||||||||||| | | || ||| |||||||| | || || |||||| Sbjct 6052782 CGAGTTGGGTTGTTTGGGAATGCATCCCCAATCGGGCGGTAAATTCCGTCCAAGGCTAAA 6052723 Query 99 TATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158 || || |||||||||||||| ||||||| || ||||||||||||| |||||| | Sbjct 6052722 TACGGGTGAGAGACCGATAGCGAACAAGTACCACGAGGGAAAGATGAAAAGGACTTTGAA 6052663 Query 159 AAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAG 197 |||||||| ||| || | ||||||||| | ||||||| Sbjct 6052662 AAGAGAGTCAAAGAGTGCTTGAAATTGTCGGGAGGGAAG 6052624 >seq1 Length=34959721 Score = 174 bits (192), Expect = 7e-41 Identities = 211/283 (75%), Gaps = 7/283 (2%) Strand=Plus/Plus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAA 464 |||| ||||||| |||| |||||||||||||| |||| | ||||||| ||| | | Sbjct 5042708 CGGCTCGTCTTGAAACATGGACCAAGGAGTCTGACATGTGTGCGAGTCAACGGGCGAGTA 5042767 Query 465 A-CCCGTGCG-CGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGG--TGCACCATCG 520 | ||| | | || || || | || || ||||| ||| | | || |||||| | Sbjct 5042768 AGCCCATAAGGCGCAAGTAAGCTCAATGG---TGGGATCCCCTCAAGGGTTGCACCTTTA 5042824 Query 521 ACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGA 580 | ||| | ||| | | || || ||||||| ||||||| |||| |||||| |||||| Sbjct 5042825 ATCGACCTCGATCTTCTGAGAAGGGTTTGAGTGAGAGCATGCCTGTCGGGACCTGAAAGA 5042884 Query 581 TGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGG 640 ||||||||||||||||| | || ||||| ||||||||||||||||||||| |||| | Sbjct 5042885 TGGTGAACTATGCCTGAGCATGGCGAAGCTAGAGGAAACTCTGGTGGAGGCCTGCAGTGA 5042944 Query 641 TTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 | ||| || ||||||| | ||| | |||||||||||||||| Sbjct 5042945 TACTGACGGGCAAATCTTTTGTCTGACTTGGGTATAGGGGCGA 5042987 Score = 132 bits (146), Expect = 2e-28 Identities = 124/158 (78%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||||||||||||| |||| | | |||||||| | | || ||||||| Sbjct 5042371 GAGTCGGGTTGTTTGGGAATGCAGCCCTAATCGAGCGGTAAATTCCGTTCAAGGCTAAAT 5042430 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | || ||||||| |||||| | ||||| |||| ||||||||||||| |||||| | Sbjct 5042431 ACATGCGAGAGACCAATAGCGAATAAGTACCGTGAAGGAAAGATGAAAAGGACTTTGAAG 5042490 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAG 197 ||| ||| ||| || | ||||||||| | ||||||| Sbjct 5042491 AGAAAGTCAAAGAGTGCTTGAAATTGTCGGGAGGGAAG 5042528 >seq10 Length=26335333 Score = 161 bits (178), Expect = 4e-37 Identities = 209/280 (75%), Gaps = 9/280 (3%) Strand=Plus/Plus Query 409 CCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTC-AAACC 467 ||||| || |||||||||||||||||||||||| | ||| ||| ||| | ||||| Sbjct 18113234 CCGTCATGAAACACGGACCAAGGAGTCTAACATGTGTGCTAGTCAACGGGCGAGTAAACC 18113293 Query 468 CGTGCG-CGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGT-GCACCATCGACCGA 525 ||| | || |||||| ||| | || || || |||||| ||||| ||| ||| Sbjct 18113294 CGTAAGGCGCAATGAAGCTGACTAGCGG--GGTCTCCTCGAGGGTTGCACCTCCGATCGA 18113351 Query 526 TCCTGATGTCTTCGGAT--GGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGG 583 ||| | ||||| || || ||| ||||||| ||| ||||||||||||| | Sbjct 18113352 -CCTCAA-TCTTCTGAGAAGGGGACAAGTGAGAGCATGCCTGCCAGGACCCGAAAGATAG 18113409 Query 584 TGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTC 643 |||||||||||||| | ||| |||||||||| |||||||||||||||| ||||||| | | Sbjct 18113410 TGAACTATGCCTGAGTGGGGCGAAGCCAGAGAAAACTCTGGTGGAGGCCCGCAGCGATAC 18113469 Query 644 TGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 | |||||||| | || | | |||||||||||||||| Sbjct 18113470 TAATGTGCAAATAGTTCTTGTGACTTGGGTATAGGGGCGA 18113509 >seq7 Length=27069033 Score = 141 bits (156), Expect = 4e-31 Identities = 128/161 (80%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 39 CGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAA 98 ||||||| |||||||| |||||||| | || || |||||||| | || || |||||| Sbjct 3255353 CGAGTCGGGTTGTTTGAAAATGCAGCCCAAATCAGGCGGTAAATTCCGTCCAAGGCTAAA 3255294 Query 99 TATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158 || | | |||||||||||||| ||||||| |||| ||||||| ||||| | |||| | Sbjct 3255293 TACGGACGAGAGACCGATAGCGAACAAGTACGGTGAGGGAAAGATAAAAAGGATTTTGAA 3255234 Query 159 AAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||||| ||| || | ||||||| | |||||||||||| Sbjct 3255233 AAGAGAGTCAAAGAGTATTTGAAATTATCGAAAGGGAAGCG 3255193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079956692450