Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= AAMG01000383.1 Length=435 Score E Sequences producing significant alignments: (Bits) Value seq2 125 2e-26 >seq2 Length=32417782 Score = 125 bits (138), Expect = 2e-26 Identities = 224/326 (69%), Gaps = 1/326 (0%) Strand=Plus/Minus Query 12 AATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTAA 71 |||||||| | ||||| || ||| |||||||| || |||| ||| ||||||||||| Sbjct 18982380 AATAAGCATCAGCTAAATATGTGTTAGCAGCCGTAGTGATACAGAGGATGCAAGCGTTAT 18982321 Query 72 TCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAAATCCCC 131 | |||| ||||||||||| || | ||| || | | |||| | | ||||||| Sbjct 18982320 CCAGAATGGTTGGGCGTAAAGTGTTTGTAGGTGGCTTTTTAAGTTCGCCATCAAATCCCA 18982261 Query 132 GGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGAGGGGGGTGG 191 |||| |||| ||| | | | | ||| ||||||||| || || | | Sbjct 18982260 AGGCTCAACCCTGGACAGGTGATGGAAATTGCCAAGCTAGAGTGTAGTAGGGGCAGAGAG 18982201 Query 192 AATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGCAG 251 |||| | ||| ||| || ||||||||||| || || | ||||||||||||| || ||| Sbjct 18982200 AATTTCCGGTGGAGCGGTAAAATGCGTAGAGATTTGAAAGAACACCAATGGCAAAAGCA- 18982142 Query 252 CCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGATA 311 | || || ||||||||| || | | |||| | |||||| || ||||| |||| Sbjct 18982141 CACCAACGGTCAACACTGACACTGAAAGAGGAAAACTAGGGGAGTGAATGGGATTGGATA 18982082 Query 312 CCCTGGTAGTCCACGCCCTAAACGAT 337 | |||||| ||| |||||||| Sbjct 18982081 TTATAGTAGTCTTAGCCGTAAACGAT 18982056 Score = 102 bits (112), Expect = 2e-19 Identities = 219/326 (67%), Gaps = 1/326 (0%) Strand=Plus/Minus Query 12 AATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTAA 71 |||||||| || |||| | |||||| | ||| |||||| ||| |||||| |||| Sbjct 19036744 AATAAGCATCGACTAATTCTGTGCCAATAACCGTAGTAATATAGAGGATGCAAGTGTTAT 19036685 Query 72 TCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAAATCCCC 131 | |||| |||||||||||| | | | | || | | ||| | | | ||||||| Sbjct 19036684 CCAGAATGGTTGGGCGTAAAGCATCTGTATGTGGCTTTTCAAGTCTGCCATCAAATCCCA 19036625 Query 132 GGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGAGGGGGGTGG 191 |||| |||| ||| | | | | ||| ||||||| || || || || Sbjct 19036624 AGGCTCAACCCTGGACAGACGGTGGAAATTGCCAAGCTAGAGTACAGTAGGGGTGGAGGG 19036565 Query 192 AATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGCAG 251 |||| | || |||||| |||||| |||| || | | ||||||||||||| || ||| Sbjct 19036564 AATTTCTGATGGAGCAGTAAAATGCATAGAGATCTAAAAGAACACCAATGGCTAAAGCA- 19036506 Query 252 CCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGATA 311 | || || |||| |||| | | ||| |||| |||||| || |||||||||| Sbjct 19036505 CACCAATGGTCAACATTGACATTGAGAGACGGAAGCTAGGGGAGTGAATGGGATTAGATA 19036446 Query 312 CCCTGGTAGTCCACGCCCTAAACGAT 337 | | |||||| ||| |||||||| Sbjct 19036445 CTGTAGTAGTCGTAGCCGTAAACGAT 19036420 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1289573962976