Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq1 109 8e-22 seq6 102 1e-19 seq13 77.0 5e-12 >seq1 Length=34959721 Score = 109 bits (120), Expect = 8e-22 Identities = 89/108 (82%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 |||||||||||||||||||||||||||| ||||| |||| ||||||| | |||| | Sbjct 1102960 GGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTACCGAGTTCCTTAGAGAGAGTTGTCT 1103019 Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 || | ||| ||||||||||||| |||||||||||||||| |||| Sbjct 1103020 CGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGTTTTGGGTA 1103067 >seq6 Length=27939960 Score = 102 bits (112), Expect = 1e-19 Identities = 86/106 (81%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 143 CACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCCG 202 |||||||||||||||||||| ||||| ||||| ||||||| |||| | |||| | || Sbjct 5456817 CACCCCTTCTCCCGAAGTTATGGGGCTATTTTACCGAATTTCTTAGAGAGAGTTGTCTCG 5456758 Query 203 AACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 || ||| ||||||||||||| |||||| ||||||||| |||| Sbjct 5456757 CACCCCTAGGTATTCTCTACCTACCCACCTATGTCGGTTTCGGGTA 5456712 >seq13 Length=28119335 Score = 77.0 bits (84), Expect = 5e-12 Identities = 45/47 (96%), Gaps = 0/47 (0%) Strand=Plus/Minus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTA 187 |||||||||||||||||||||| ||||| |||||||||||||||||| Sbjct 25752578 GGCACCCCTTCTCCCGAAGTTATGGGGCTATTTTGCCGAATTCCTTA 25752532 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694386418187