Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10]
2,019 sequences; 582,117,524 total letters
Query= AAMG01000538.1
Length=248
Score E
Sequences producing significant alignments: (Bits) Value
seq1 109 8e-22
seq6 102 1e-19
seq13 77.0 5e-12
>seq1
Length=34959721
Score = 109 bits (120), Expect = 8e-22
Identities = 89/108 (82%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200
|||||||||||||||||||||||||||| ||||| |||| ||||||| | |||| |
Sbjct 1102960 GGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTACCGAGTTCCTTAGAGAGAGTTGTCT 1103019
Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248
|| | ||| ||||||||||||| |||||||||||||||| ||||
Sbjct 1103020 CGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGTTTTGGGTA 1103067
>seq6
Length=27939960
Score = 102 bits (112), Expect = 1e-19
Identities = 86/106 (81%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 143 CACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCCG 202
|||||||||||||||||||| ||||| ||||| ||||||| |||| | |||| | ||
Sbjct 5456817 CACCCCTTCTCCCGAAGTTATGGGGCTATTTTACCGAATTTCTTAGAGAGAGTTGTCTCG 5456758
Query 203 AACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248
|| ||| ||||||||||||| |||||| ||||||||| ||||
Sbjct 5456757 CACCCCTAGGTATTCTCTACCTACCCACCTATGTCGGTTTCGGGTA 5456712
>seq13
Length=28119335
Score = 77.0 bits (84), Expect = 5e-12
Identities = 45/47 (96%), Gaps = 0/47 (0%)
Strand=Plus/Minus
Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTA 187
|||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 25752578 GGCACCCCTTCTCCCGAAGTTATGGGGCTATTTTGCCGAATTCCTTA 25752532
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694386418187
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |