Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq3 89.7 1e-15 seq1 77.0 8e-12 >seq3 Length=29412403 Score = 89.7 bits (98), Expect = 1e-15 Identities = 96/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 12 TGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGT 71 |||||||||||| || | |||||| ||| ||| | ||||||||||| ||| | Sbjct 19148155 TGCATCTTCACATATATGTATATTTCATCGAGCCTCTTTTTGAGACAGCGCCCAGATCAT 19148096 Query 72 TACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 131 || || |||||| | || ||||||| ||| ||||||||| |||| ||||||||| || Sbjct 19148095 TATACCTTTCGTGTGGATCAAAACTTACTCGATAAGGAATTTTGCTATCTTAGGACCATT 19148036 Query 132 ATTGTTA 138 || |||| Sbjct 19148035 ATAGTTA 19148029 >seq1 Length=34959721 Score = 77.0 bits (84), Expect = 8e-12 Identities = 71/90 (79%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 337 GGCGCACCTTCTCCCGAAGTTACGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCT 396 ||| | ||||||||||||||||||| || |||| || |||||||| ||||| ||| Sbjct 1102960 GGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTACCGAGTTCCTTAGAGAGAGTTGTCT 1103019 Query 397 CAAGCGCCTTGGTATTCTCTACCCAACCAC 426 | || ||| ||||||||||||| | |||| Sbjct 1103020 CGCGCCCCTAGGTATTCTCTACCTACCCAC 1103049 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260774544448