Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10]
2,019 sequences; 582,117,524 total letters
Query= AAMG01000811.1
Length=502
Score E
Sequences producing significant alignments: (Bits) Value
seq8 237 5e-60
seq2 158 4e-36
seq14 149 2e-33
seq11 105 2e-20
seq12 102 2e-19
seq13 96.9 1e-17
>seq8
Length=34000172
Score = 237 bits (262), Expect = 5e-60
Identities = 252/322 (78%), Gaps = 9/322 (3%)
Strand=Plus/Minus
Query 7 CGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTT 66
|||||| |||||||||||| ||||||||||| |||| ||||||||||||||||||||||
Sbjct 4625422 CGCAAGAATGAAACTCAAAGCAATTGACGGGG-CCCGTACAAGCGGTGGAGCATGTGGTT 4625364
Query 67 TAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTCTAGAGA 126
||||| || |||| ||||| |||||||||| | ||||||| | | ||||| || |
Sbjct 4625363 TAATT-GATGCAAAGCGAAAAACCTTACCAGGT-TTGACATGCCGCAAATCCTCTTGAAA 4625306
Query 127 TAGAGGTTTCCCCTTCGGGGGACAGAGTGACA--GGTGATGCATGGTTGTCGTCAGCTCG 184
|| || | || |||||| || ||| |||| |||| ||||||| |||||||| ||||
Sbjct 4625305 GAGTGGGGTGCC-TTCGGGA-AC-GAG-GACATAGGTGGTGCATGGCTGTCGTCACCTCG 4625250
Query 185 TGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGCCATC 244
|| ||| | | |||| |||||||| |||| |||||||||| | | |||||||||| |
Sbjct 4625249 TGCCGTAAAGTATTGGATTAAGTCCTGCAATGAGCGCAACCATCGTGTTTAGTTGCCACC 4625190
Query 245 ATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACG 304
|| |||| | | || || |||| ||||||| || || ||||||||| ||| || |
Sbjct 4625189 GTTGAGTTTGAAATCCTGAGCAGACTTCCGGTGATAAGCCAGAGGAAGGTAAGGATGATG 4625130
Query 305 TCAAATCATCATGCCCCTTATG 326
|||| ||||||||||| |||||
Sbjct 4625129 TCAAGTCATCATGCCCATTATG 4625108
>seq2
Length=32417782
Score = 158 bits (174), Expect = 4e-36
Identities = 165/216 (76%), Gaps = 2/216 (1%)
Strand=Plus/Minus
Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60
|||| | |||| |||||||||||||||||||||||| ||| ||||||| |||||||||
Sbjct 19036348 TACGTTCACAAGAATGAAACTCAAAGGAATTGACGGGGGCCCACACAAGCAGTGGAGCAT 19036289
Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120
|||||||||| || |||| || ||||| ||||||| |||||||| | || ||||
Sbjct 19036288 ATGGTTTAATTTGATGCAAAGCAAAGAATCTTACCAGGGCTTGACATACCGCGAATCCTC 19036229
Query 121 TAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAG 180
| || | ||| | | || || ||| ||| | ||||||| | |||| |||| ||
Sbjct 19036228 TTGAAAGAGAAGAGTGCCTTT--GGGAACACGGGCACAGGTGGTAGATGGCCGTCGACAA 19036171
Query 181 CTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACG 216
||| || | | || ||||| ||||||||||||||||
Sbjct 19036170 CTCATGCCTTAAGGTGTTGAGTTAAGTCCCGCAACG 19036135
Score = 131 bits (144), Expect = 5e-28
Identities = 167/229 (73%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60
|||| | |||| |||||||||||| |||||||| | || |||||||||||||||||
Sbjct 18981984 TACGTTCACAAGAATGAAACTCAAAGAAATTGACGAGAGCCTACACAAGCGGTGGAGCAT 18981925
Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120
|||||||||| || || |||||||||||||||| || ||||| | ||| ||||
Sbjct 18981924 ATGGTTTAATTTGATATAAAGCGAAGAACCTTACCAGCGCTGGACATACCGTGAATCCTC 18981865
Query 121 TAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAG 180
| |||| ||| | | || || || | || ||||||| | |||| || | ||
Sbjct 18981864 TTGAGAGAGAAGGGTGCCTTTAGGAATGCGGA--AACAGGTGGCGTATGGCCGTGGATAG 18981807
Query 181 CTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTA 229
||| || | | || |||| |||||||| | |||||| |||| |||||
Sbjct 18981806 CTCATGCCTTAAGGTGTTTAGTTAAGTCTCAGAACGAGTGCAAACCTTA 18981758
>seq14
Length=24855542
Score = 149 bits (164), Expect = 2e-33
Identities = 166/221 (75%), Gaps = 2/221 (1%)
Strand=Plus/Plus
Query 8 GCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTTT 67
||||| | ||||||||||||||| || | |||| || || |||||||||| ||||||
Sbjct 18958477 GCAAGAATAAAACTCAAAGGAATTAACAAGTACCCTCAACAGTGGTGGAGCATATGGTTT 18958536
Query 68 AATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTCTAGAGAT 127
||||| | |||| | ||| |||||||| | |||| |||| | ||| ||||| || |
Sbjct 18958537 AATTCAATGCAAAGAGAATAACCTTACTAGGTCTTAACATGATGTGAATCCTCTTGAAAA 18958596
Query 128 AGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAGCTCGTGT 187
||||| | || || || || | ||||||||||||||||||| |||| |||||
Sbjct 18958597 AGAGGGGTGCC--TCCAGGATCATACACACAGGTGATGCATGGTTGTTGTCAACTCGTAC 18958654
Query 188 CGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTT 228
|||| ||||||||| ||||| ||||| |||| || |||
Sbjct 18958655 TATGAGGTGTTGGGTTTAGTCCAACAACGGGCGCTACACTT 18958695
>seq11
Length=27369018
Score = 105 bits (116), Expect = 2e-20
Identities = 115/153 (75%), Gaps = 0/153 (0%)
Strand=Plus/Minus
Query 230 AGCTTAGTTGCCATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGG 289
|| |||||||||| || |||| || | || || |||||| | ||| || ||||||
Sbjct 8114049 AGTTTAGTTGCCACGGTTGAGTTTGGAATCCTTAGCAGACTGCTGATGATAAGTCGGAGG 8113990
Query 290 AAGGTGGGGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACA 349
||||| || || ||||| ||||||| |||||||| ||| || |||||||||||| |
Sbjct 8113989 AAGGTCAAGATGAGGTCAAGTCATCATATCCCTTATGCCTTGAGCAACACACGTGCTATA 8113930
Query 350 ATGGACAATACAAAGGGCAGCGAAACCGCGAGG 382
|||| | |||||||| |||| ||||||||
Sbjct 8113929 ATGGCCGGGACAAAGGGTTGCGATTCCGCGAGG 8113897
>seq12
Length=31596830
Score = 102 bits (112), Expect = 2e-19
Identities = 122/166 (73%), Gaps = 0/166 (0%)
Strand=Plus/Plus
Query 307 AAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATACAAAGGG 366
|| |||||||| | ||||| | || || ||||| | |||||||| ||| ||||||||
Sbjct 21536500 AAGTCATCATGTCTCTTATACTCTGTGCGACACATGCGCTACAATAGACGGAACAAAGGG 21536559
Query 367 CAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCT 426
|||| |||||||| ||| || | | || | |||| ||||| ||||| || |
Sbjct 21536560 TTGCGATCCCGCGAGGGTGAGCTAACTCTAAAATTTCATTCTTAGTTCAGATTGAAGATT 21536619
Query 427 GCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAG 472
|||||||| || ||||| | |||||||||||||| | || ||||
Sbjct 21536620 GCAACTCGTCTGCATGAAACCTGAATCGCTAGTAATTGCAGGTCAG 21536665
>seq13
Length=28119335
Score = 96.9 bits (106), Expect = 1e-17
Identities = 90/112 (80%), Gaps = 2/112 (2%)
Strand=Plus/Minus
Query 386 AGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAG 445
||| || ||| ||| | || |||||||||||||| || |||||||||| || |||||
Sbjct 25180284 AGCTAACTCCAAAAACTCGTCCTCAGTTCGGATTGCAGGCTGCAACTCG-CTGCATGAAA 25180226
Query 446 CTGGAATCGCTAGTAATCGTAGATCAG-CATGCTACGGTGAATACGTTCCCG 496
| ||||||||||||||||| | |||| ||| | |||||||| ||||||||
Sbjct 25180225 CCGGAATCGCTAGTAATCGCCGGTCAGCCATACGGCGGTGAATTCGTTCCCG 25180174
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1503969634240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |