Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq8 237 5e-60 seq2 158 4e-36 seq14 149 2e-33 seq11 105 2e-20 seq12 102 2e-19 seq13 96.9 1e-17 >seq8 Length=34000172 Score = 237 bits (262), Expect = 5e-60 Identities = 252/322 (78%), Gaps = 9/322 (3%) Strand=Plus/Minus Query 7 CGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTT 66 |||||| |||||||||||| ||||||||||| |||| |||||||||||||||||||||| Sbjct 4625422 CGCAAGAATGAAACTCAAAGCAATTGACGGGG-CCCGTACAAGCGGTGGAGCATGTGGTT 4625364 Query 67 TAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTCTAGAGA 126 ||||| || |||| ||||| |||||||||| | ||||||| | | ||||| || | Sbjct 4625363 TAATT-GATGCAAAGCGAAAAACCTTACCAGGT-TTGACATGCCGCAAATCCTCTTGAAA 4625306 Query 127 TAGAGGTTTCCCCTTCGGGGGACAGAGTGACA--GGTGATGCATGGTTGTCGTCAGCTCG 184 || || | || |||||| || ||| |||| |||| ||||||| |||||||| |||| Sbjct 4625305 GAGTGGGGTGCC-TTCGGGA-AC-GAG-GACATAGGTGGTGCATGGCTGTCGTCACCTCG 4625250 Query 185 TGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGCCATC 244 || ||| | | |||| |||||||| |||| |||||||||| | | |||||||||| | Sbjct 4625249 TGCCGTAAAGTATTGGATTAAGTCCTGCAATGAGCGCAACCATCGTGTTTAGTTGCCACC 4625190 Query 245 ATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACG 304 || |||| | | || || |||| ||||||| || || ||||||||| ||| || | Sbjct 4625189 GTTGAGTTTGAAATCCTGAGCAGACTTCCGGTGATAAGCCAGAGGAAGGTAAGGATGATG 4625130 Query 305 TCAAATCATCATGCCCCTTATG 326 |||| ||||||||||| ||||| Sbjct 4625129 TCAAGTCATCATGCCCATTATG 4625108 >seq2 Length=32417782 Score = 158 bits (174), Expect = 4e-36 Identities = 165/216 (76%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| | |||| |||||||||||||||||||||||| ||| ||||||| ||||||||| Sbjct 19036348 TACGTTCACAAGAATGAAACTCAAAGGAATTGACGGGGGCCCACACAAGCAGTGGAGCAT 19036289 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 |||||||||| || |||| || ||||| ||||||| |||||||| | || |||| Sbjct 19036288 ATGGTTTAATTTGATGCAAAGCAAAGAATCTTACCAGGGCTTGACATACCGCGAATCCTC 19036229 Query 121 TAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAG 180 | || | ||| | | || || ||| ||| | ||||||| | |||| |||| || Sbjct 19036228 TTGAAAGAGAAGAGTGCCTTT--GGGAACACGGGCACAGGTGGTAGATGGCCGTCGACAA 19036171 Query 181 CTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACG 216 ||| || | | || ||||| |||||||||||||||| Sbjct 19036170 CTCATGCCTTAAGGTGTTGAGTTAAGTCCCGCAACG 19036135 Score = 131 bits (144), Expect = 5e-28 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| | |||| |||||||||||| |||||||| | || ||||||||||||||||| Sbjct 18981984 TACGTTCACAAGAATGAAACTCAAAGAAATTGACGAGAGCCTACACAAGCGGTGGAGCAT 18981925 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 |||||||||| || || |||||||||||||||| || ||||| | ||| |||| Sbjct 18981924 ATGGTTTAATTTGATATAAAGCGAAGAACCTTACCAGCGCTGGACATACCGTGAATCCTC 18981865 Query 121 TAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAG 180 | |||| ||| | | || || || | || ||||||| | |||| || | || Sbjct 18981864 TTGAGAGAGAAGGGTGCCTTTAGGAATGCGGA--AACAGGTGGCGTATGGCCGTGGATAG 18981807 Query 181 CTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTA 229 ||| || | | || |||| |||||||| | |||||| |||| ||||| Sbjct 18981806 CTCATGCCTTAAGGTGTTTAGTTAAGTCTCAGAACGAGTGCAAACCTTA 18981758 >seq14 Length=24855542 Score = 149 bits (164), Expect = 2e-33 Identities = 166/221 (75%), Gaps = 2/221 (1%) Strand=Plus/Plus Query 8 GCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTTT 67 ||||| | ||||||||||||||| || | |||| || || |||||||||| |||||| Sbjct 18958477 GCAAGAATAAAACTCAAAGGAATTAACAAGTACCCTCAACAGTGGTGGAGCATATGGTTT 18958536 Query 68 AATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTCTAGAGAT 127 ||||| | |||| | ||| |||||||| | |||| |||| | ||| ||||| || | Sbjct 18958537 AATTCAATGCAAAGAGAATAACCTTACTAGGTCTTAACATGATGTGAATCCTCTTGAAAA 18958596 Query 128 AGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAGCTCGTGT 187 ||||| | || || || || | ||||||||||||||||||| |||| ||||| Sbjct 18958597 AGAGGGGTGCC--TCCAGGATCATACACACAGGTGATGCATGGTTGTTGTCAACTCGTAC 18958654 Query 188 CGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTT 228 |||| ||||||||| ||||| ||||| |||| || ||| Sbjct 18958655 TATGAGGTGTTGGGTTTAGTCCAACAACGGGCGCTACACTT 18958695 >seq11 Length=27369018 Score = 105 bits (116), Expect = 2e-20 Identities = 115/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 230 AGCTTAGTTGCCATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGG 289 || |||||||||| || |||| || | || || |||||| | ||| || |||||| Sbjct 8114049 AGTTTAGTTGCCACGGTTGAGTTTGGAATCCTTAGCAGACTGCTGATGATAAGTCGGAGG 8113990 Query 290 AAGGTGGGGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACA 349 ||||| || || ||||| ||||||| |||||||| ||| || |||||||||||| | Sbjct 8113989 AAGGTCAAGATGAGGTCAAGTCATCATATCCCTTATGCCTTGAGCAACACACGTGCTATA 8113930 Query 350 ATGGACAATACAAAGGGCAGCGAAACCGCGAGG 382 |||| | |||||||| |||| |||||||| Sbjct 8113929 ATGGCCGGGACAAAGGGTTGCGATTCCGCGAGG 8113897 >seq12 Length=31596830 Score = 102 bits (112), Expect = 2e-19 Identities = 122/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 307 AAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATACAAAGGG 366 || |||||||| | ||||| | || || ||||| | |||||||| ||| |||||||| Sbjct 21536500 AAGTCATCATGTCTCTTATACTCTGTGCGACACATGCGCTACAATAGACGGAACAAAGGG 21536559 Query 367 CAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCT 426 |||| |||||||| ||| || | | || | |||| ||||| ||||| || | Sbjct 21536560 TTGCGATCCCGCGAGGGTGAGCTAACTCTAAAATTTCATTCTTAGTTCAGATTGAAGATT 21536619 Query 427 GCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAG 472 |||||||| || ||||| | |||||||||||||| | || |||| Sbjct 21536620 GCAACTCGTCTGCATGAAACCTGAATCGCTAGTAATTGCAGGTCAG 21536665 >seq13 Length=28119335 Score = 96.9 bits (106), Expect = 1e-17 Identities = 90/112 (80%), Gaps = 2/112 (2%) Strand=Plus/Minus Query 386 AGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAG 445 ||| || ||| ||| | || |||||||||||||| || |||||||||| || ||||| Sbjct 25180284 AGCTAACTCCAAAAACTCGTCCTCAGTTCGGATTGCAGGCTGCAACTCG-CTGCATGAAA 25180226 Query 446 CTGGAATCGCTAGTAATCGTAGATCAG-CATGCTACGGTGAATACGTTCCCG 496 | ||||||||||||||||| | |||| ||| | |||||||| |||||||| Sbjct 25180225 CCGGAATCGCTAGTAATCGCCGGTCAGCCATACGGCGGTGAATTCGTTCCCG 25180174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503969634240