Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq1171 219 7e-55 seq17 197 2e-48 seq15 161 2e-37 >seq1171 Length=10373 Score = 219 bits (242), Expect = 7e-55 Identities = 199/246 (81%), Gaps = 5/246 (2%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||| |||| ||||| | | ||||| |||||||||||| |||||||||||||||||||||| Sbjct 3714 TCAATGTAACGCGCATACAGCCCAAAACATCTAAGGGTATCACAGACCTGTTATTGCCTC 3655 Query 76 AAACTTCCATTGGCTGGAA-GCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTC 134 ||| || | |||||| || | | |||||||||||||||||| || | | | Sbjct 3654 AAATTTTC-TTGGCTTAAAAGGCCATAGTCCCTCTAAGAAGCTGGCTGTGGAGGGTCACC 3596 Query 135 GATGGGG--CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATC 192 || ||| |||||||| | | || |||||| ||| || ||||||||||||||||| Sbjct 3595 TCTGCATAACTAGTTAGCAGGCTGAAGTATCGTTCATTAACGAAATTAACCAGACAAATC 3536 Query 193 ACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAA 252 |||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| Sbjct 3535 GCTCCACCAACTAAGAA-GGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTCTCAG 3477 Query 253 TCTGTC 258 |||||| Sbjct 3476 TCTGTC 3471 >seq17 Length=27373735 Score = 197 bits (218), Expect = 2e-48 Identities = 192/245 (78%), Gaps = 3/245 (1%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||||||||| || | || |||||| ||||||||| || ||||||||||| |||||||||| Sbjct 6845873 TCAGTGTAGTGCACATGTGGCCCACAACATCTAAAGGAATCACAGACCTATTATTGCCTC 6845814 Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTCG 135 |||||| | | || ||| ||| |||||||||||||| || | | | Sbjct 6845813 AAACTTTCTTAACCTAAAAGGTCATAATCCCTCTAAGAAGCTGGCTGTGGAGGGTCACCT 6845754 Query 136 ATGGG--GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCA 193 || |||| ||||| || ||||||||| || |||| ||||||| ||| |||||||| Sbjct 6845753 TTGCATAGCTAGTTAGCGGGCTAAGGTCTCATTTGTTAATGGAATTA-CCATACAAATCA 6845695 Query 194 CTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAAT 253 |||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| | Sbjct 6845694 CTCCACCAACTAAGAACGTATATGCACCACCACCCATAGAATCAAGAAAGAGCTCTCAGT 6845635 Query 254 CTGTC 258 | ||| Sbjct 6845634 CAGTC 6845630 >seq15 Length=26192760 Score = 161 bits (178), Expect = 2e-37 Identities = 108/119 (91%), Gaps = 1/119 (1%) Strand=Plus/Minus Query 141 GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACC 200 |||| |||||| | ||||||||||||||||| |||||||||||||||||||| ||||||| Sbjct 19961014 GCTAGTTAGCAAGCTAAGGTCTCGTTCGTTAACGGAATTAACCAGACAAATCGCTCCACC 19960955 Query 201 AACTAAGAACGGCCATGCACCACCACCCATAGAAT-CAAGAAAGAGCTATCAATCTGTC 258 |||||||||||| |||||||||||||||||||||| || |||||||| ||| |||||| Sbjct 19960954 AACTAAGAACGGTCATGCACCACCACCCATAGAATAAAAAAAAGAGCTCTCAGTCTGTC 19960896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796784415339