Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10]
2,019 sequences; 582,117,524 total letters
Query= AAMG01000911.1
Length=280
Score E
Sequences producing significant alignments: (Bits) Value
seq1171 219 7e-55
seq17 197 2e-48
seq15 161 2e-37
>seq1171
Length=10373
Score = 219 bits (242), Expect = 7e-55
Identities = 199/246 (81%), Gaps = 5/246 (2%)
Strand=Plus/Minus
Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75
||| |||| ||||| | | ||||| |||||||||||| ||||||||||||||||||||||
Sbjct 3714 TCAATGTAACGCGCATACAGCCCAAAACATCTAAGGGTATCACAGACCTGTTATTGCCTC 3655
Query 76 AAACTTCCATTGGCTGGAA-GCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTC 134
||| || | |||||| || | | |||||||||||||||||| || | | |
Sbjct 3654 AAATTTTC-TTGGCTTAAAAGGCCATAGTCCCTCTAAGAAGCTGGCTGTGGAGGGTCACC 3596
Query 135 GATGGGG--CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATC 192
|| ||| |||||||| | | || |||||| ||| || |||||||||||||||||
Sbjct 3595 TCTGCATAACTAGTTAGCAGGCTGAAGTATCGTTCATTAACGAAATTAACCAGACAAATC 3536
Query 193 ACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAA 252
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 3535 GCTCCACCAACTAAGAA-GGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTCTCAG 3477
Query 253 TCTGTC 258
||||||
Sbjct 3476 TCTGTC 3471
>seq17
Length=27373735
Score = 197 bits (218), Expect = 2e-48
Identities = 192/245 (78%), Gaps = 3/245 (1%)
Strand=Plus/Minus
Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75
||||||||| || | || |||||| ||||||||| || ||||||||||| ||||||||||
Sbjct 6845873 TCAGTGTAGTGCACATGTGGCCCACAACATCTAAAGGAATCACAGACCTATTATTGCCTC 6845814
Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTCG 135
|||||| | | || ||| ||| |||||||||||||| || | | |
Sbjct 6845813 AAACTTTCTTAACCTAAAAGGTCATAATCCCTCTAAGAAGCTGGCTGTGGAGGGTCACCT 6845754
Query 136 ATGGG--GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCA 193
|| |||| ||||| || ||||||||| || |||| ||||||| ||| ||||||||
Sbjct 6845753 TTGCATAGCTAGTTAGCGGGCTAAGGTCTCATTTGTTAATGGAATTA-CCATACAAATCA 6845695
Query 194 CTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAAT 253
|||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |
Sbjct 6845694 CTCCACCAACTAAGAACGTATATGCACCACCACCCATAGAATCAAGAAAGAGCTCTCAGT 6845635
Query 254 CTGTC 258
| |||
Sbjct 6845634 CAGTC 6845630
>seq15
Length=26192760
Score = 161 bits (178), Expect = 2e-37
Identities = 108/119 (91%), Gaps = 1/119 (1%)
Strand=Plus/Minus
Query 141 GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACC 200
|||| |||||| | ||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 19961014 GCTAGTTAGCAAGCTAAGGTCTCGTTCGTTAACGGAATTAACCAGACAAATCGCTCCACC 19960955
Query 201 AACTAAGAACGGCCATGCACCACCACCCATAGAAT-CAAGAAAGAGCTATCAATCTGTC 258
|||||||||||| |||||||||||||||||||||| || |||||||| ||| ||||||
Sbjct 19960954 AACTAAGAACGGTCATGCACCACCACCCATAGAATAAAAAAAAGAGCTCTCAGTCTGTC 19960896
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 796784415339
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |