Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10]
2,019 sequences; 582,117,524 total letters
Query= AAMG01000941.1
Length=299
Score E
Sequences producing significant alignments: (Bits) Value
seq6 399 4e-109
seq1 313 4e-83
seq2 235 9e-60
seq10 201 2e-49
seq14 89.7 9e-16
>seq6
Length=27939960
Score = 399 bits (442), Expect = 4e-109
Identities = 265/293 (90%), Gaps = 1/293 (0%)
Strand=Plus/Plus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60
||||| | |||||||||| | | || |||||||||||||||||||||||||||||||||
Sbjct 14900279 TACTAGGTTGAATTACCATCGCGACG-CGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 14900337
Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120
||||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||
Sbjct 14900338 CGACGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACACTTGGTGA 14900397
Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180
|||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 14900398 ATTCTGCTTCACAGTGATAGGAAGAGCCGACATCGAAGGATTAAAAAGCAACGTCGCTAT 14900457
Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240
||||||||||||| |||||||||||||||||||| |||||||||||| |||||||||| |
Sbjct 14900458 GAACGCTTGGCTGTCACAAGCCAGTTATCCCTGTCGTAACTTTTCTGACACCTCTAGCTT 14900517
Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293
|||||||||| || |||||||||||||||||||| |||||| |||| |||||
Sbjct 14900518 CAAATTTCGAAGGTCTAAAGGATCGATAGGCCACGCTTTCACGGTTCATATTC 14900570
Score = 342 bits (378), Expect = 9e-92
Identities = 239/271 (88%), Gaps = 1/271 (0%)
Strand=Plus/Minus
Query 10 GAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCT 69
|||||||||||| | | ||||||||| ||||||||||||||| ||||| | || |||||
Sbjct 12086374 GAATTACCATTGCGATG-CGGTCATCAATAGGGTAAAACTAACATGTCTTACGATGGTCT 12086316
Query 70 AAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTT 129
|||||||| ||||||||||| || |||||||||||||||| | ||| ||||||| |||
Sbjct 12086315 AAACCCAGTTCACGTTCCCTTTTGGTGGGTGAACAATCCAGCACTTGGTGAATTCTACTT 12086256
Query 130 CGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTG 189
| |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 12086255 CACAATGATAGGAAGAGCCGGCATCGAAGGATCAAAAAGCAATGTCGCTATGAACGCTTG 12086196
Query 190 GCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCG 249
||||||| ||||||||||||||| |||||||||||||| |||||||||| |||||||| |
Sbjct 12086195 GCTGCCAAAAGCCAGTTATCCCTATGGTAACTTTTCTGACACCTCTAGCTTCAAATTTTG 12086136
Query 250 AGGGACTAAAGGATCGATAGGCCACACTTTC 280
| || ||||||||||||||||||| |||||
Sbjct 12086135 AAGGTCTAAAGGATCGATAGGCCATGCTTTC 12086105
Score = 136 bits (150), Expect = 7e-30
Identities = 92/102 (90%), Gaps = 1/102 (1%)
Strand=Plus/Minus
Query 10 GAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCT 69
|||||||||| | | | ||||||||| ||||||||||||||||||||| |||| |||||
Sbjct 11339266 GAATTACCATCGCGATG-CGGTCATCAATAGGGTAAAACTAACCTGTCTTATGATGGTCT 11339208
Query 70 AAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAAC 111
|||||||||||||||||||| || ||||||||||||||||||
Sbjct 11339207 AAACCCAGCTCACGTTCCCTTTTGGTGGGTGAACAATCCAAC 11339166
>seq1
Length=34959721
Score = 313 bits (346), Expect = 4e-83
Identities = 242/284 (85%), Gaps = 4/284 (1%)
Strand=Plus/Minus
Query 10 GAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCT 69
|||||||||| | || | ||||||||||||||||||||||||||||||| || |||||
Sbjct 5045045 GAATTACCATCGCAACG-CAGTCATCAGTAGGGTAAAACTAACCTGTCTCACGATGGTCT 5044987
Query 70 AAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTT 129
||| | |||| || ||||||||| ||||||||||||||||| | | ||||| ||||
Sbjct 5044986 AAATCTAGCTTACATTCCCTATTGGTGGGTGAACAATCCAATACATGGTGAATTTTGCTC 5044927
Query 130 CGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTG 189
|| |||| |||||| | |||| |||||||||||||||| |||||||||||||||||
Sbjct 5044926 AACAATAATAGAAAGAGCTGGCATCAAAGGATCAAAAAGCAATGTCGCTATGAACGCTTG 5044867
Query 190 GCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCG 249
||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||
Sbjct 5044866 TCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCTTCAAA-TTCG 5044808
Query 250 AGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293
| || ||||||| |||||||||| ||||||||||| ||||||
Sbjct 5044807 AAGGTCTAAAGG--CGATAGGCCATGCTTTCATGGTTCGTATTC 5044766
Score = 149 bits (164), Expect = 1e-33
Identities = 116/137 (85%), Gaps = 1/137 (1%)
Strand=Plus/Plus
Query 146 GCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGT 205
|||||||||||||||| ||||||||| || |||||||| ||||||||||| ||||||||
Sbjct 24050141 GCCGACATCGAAGGAT-AAAAAGCAATGTTGCTATGAATACTTGGCTGCCATAAGCCAGT 24050199
Query 206 TATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCG 265
||||| | |||||||||||||| |||||||| | |||| ||| || || |||||| |||
Sbjct 24050200 TATCCTTATGGTAACTTTTCTGACACCTCTACCTTCAAGTTTTGAAGGTCTAAAGAATCA 24050259
Query 266 ATAGGCCACACTTTCAT 282
||| || || |||| ||
Sbjct 24050260 ATAAGCTACGCTTTTAT 24050276
>seq2
Length=32417782
Score = 235 bits (260), Expect = 9e-60
Identities = 213/266 (80%), Gaps = 4/266 (2%)
Strand=Plus/Minus
Query 29 GGTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCC 88
|||||||| ||| |||||| |||||||||||| || || ||||||||| || |||| |
Sbjct 16411366 GGTCATCACTAGAGTAAAATTAACCTGTCTCACGATGGCCTAAACCCAAACCATGTTCGC 16411307
Query 89 TATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCC 148
|||| ||||| ||||||| ||| || | ||||||| ||| |||||||||||||||
Sbjct 16411306 TATTGGTGGGAGAACAATTCAATACTCAGTGAATTCTATTTCACAATGATAGGAAGAGCC 16411247
Query 149 GACATCGAAGGATCAAAAAGC--AACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTT 206
||||||||||||| ||||||| ||| || || |||| ||||||||| ||||||||| ||
Sbjct 16411246 GACATCGAAGGATAAAAAAGCAAAACATCACTGTGAAGGCTTGGCTGGCACAAGCCAATT 16411187
Query 207 ATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGA 266
|||||| | |||||||| || |||||||| ||||||| ||| | ||||||||||||
Sbjct 16411186 ATCCCTACGATAACTTTTGTGACACCTCTAATTTCAAATTCCGAAAGTCTAAAGGATCGA 16411127
Query 267 TAGGCCACACTTTCATGGTTTGTATT 292
||| || |||||| | || ||||
Sbjct 16411126 TAG--CATGCTTTCACGATTCATATT 16411103
>seq10
Length=26335333
Score = 201 bits (222), Expect = 2e-49
Identities = 120/126 (95%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 153 TCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCT 212
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 18283049 TCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCT 18282990
Query 213 GTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCC 272
||||||||||||||| |||||||||| ||||||| ||| || ||||||||||||||||||
Sbjct 18282989 GTGGTAACTTTTCTGACACCTCTAGCTTCAAATTCCGAAGGTCTAAAGGATCGATAGGCC 18282930
Query 273 ACACTT 278
|| |||
Sbjct 18282929 ACGCTT 18282924
>seq14
Length=24855542
Score = 89.7 bits (98), Expect = 9e-16
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 215 GGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCAC 274
||||||||| ||| |||||||||| ||||||||| | || |||||| |||||||||||||
Sbjct 24763215 GGTAACTTTCCTGACACCTCTAGCTTCAAATTTCAAAGGTCTAAAGTATCGATAGGCCAC 24763274
Query 275 ACTTTCATGGTT 286
| ||||| ||||
Sbjct 24763275 ATTTTCACGGTT 24763286
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 854382749664
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |