Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq6 399 4e-109 seq1 313 4e-83 seq2 235 9e-60 seq10 201 2e-49 seq14 89.7 9e-16 >seq6 Length=27939960 Score = 399 bits (442), Expect = 4e-109 Identities = 265/293 (90%), Gaps = 1/293 (0%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||| | |||||||||| | | || ||||||||||||||||||||||||||||||||| Sbjct 14900279 TACTAGGTTGAATTACCATCGCGACG-CGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 14900337 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 ||||||||||||||||||||||||||||||| |||||||||||||||||| ||| || Sbjct 14900338 CGACGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACACTTGGTGA 14900397 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 14900398 ATTCTGCTTCACAGTGATAGGAAGAGCCGACATCGAAGGATTAAAAAGCAACGTCGCTAT 14900457 Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240 ||||||||||||| |||||||||||||||||||| |||||||||||| |||||||||| | Sbjct 14900458 GAACGCTTGGCTGTCACAAGCCAGTTATCCCTGTCGTAACTTTTCTGACACCTCTAGCTT 14900517 Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 |||||||||| || |||||||||||||||||||| |||||| |||| ||||| Sbjct 14900518 CAAATTTCGAAGGTCTAAAGGATCGATAGGCCACGCTTTCACGGTTCATATTC 14900570 Score = 342 bits (378), Expect = 9e-92 Identities = 239/271 (88%), Gaps = 1/271 (0%) Strand=Plus/Minus Query 10 GAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCT 69 |||||||||||| | | ||||||||| ||||||||||||||| ||||| | || ||||| Sbjct 12086374 GAATTACCATTGCGATG-CGGTCATCAATAGGGTAAAACTAACATGTCTTACGATGGTCT 12086316 Query 70 AAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTT 129 |||||||| ||||||||||| || |||||||||||||||| | ||| ||||||| ||| Sbjct 12086315 AAACCCAGTTCACGTTCCCTTTTGGTGGGTGAACAATCCAGCACTTGGTGAATTCTACTT 12086256 Query 130 CGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTG 189 | |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| Sbjct 12086255 CACAATGATAGGAAGAGCCGGCATCGAAGGATCAAAAAGCAATGTCGCTATGAACGCTTG 12086196 Query 190 GCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCG 249 ||||||| ||||||||||||||| |||||||||||||| |||||||||| |||||||| | Sbjct 12086195 GCTGCCAAAAGCCAGTTATCCCTATGGTAACTTTTCTGACACCTCTAGCTTCAAATTTTG 12086136 Query 250 AGGGACTAAAGGATCGATAGGCCACACTTTC 280 | || ||||||||||||||||||| ||||| Sbjct 12086135 AAGGTCTAAAGGATCGATAGGCCATGCTTTC 12086105 Score = 136 bits (150), Expect = 7e-30 Identities = 92/102 (90%), Gaps = 1/102 (1%) Strand=Plus/Minus Query 10 GAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCT 69 |||||||||| | | | ||||||||| ||||||||||||||||||||| |||| ||||| Sbjct 11339266 GAATTACCATCGCGATG-CGGTCATCAATAGGGTAAAACTAACCTGTCTTATGATGGTCT 11339208 Query 70 AAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAAC 111 |||||||||||||||||||| || |||||||||||||||||| Sbjct 11339207 AAACCCAGCTCACGTTCCCTTTTGGTGGGTGAACAATCCAAC 11339166 >seq1 Length=34959721 Score = 313 bits (346), Expect = 4e-83 Identities = 242/284 (85%), Gaps = 4/284 (1%) Strand=Plus/Minus Query 10 GAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCT 69 |||||||||| | || | ||||||||||||||||||||||||||||||| || ||||| Sbjct 5045045 GAATTACCATCGCAACG-CAGTCATCAGTAGGGTAAAACTAACCTGTCTCACGATGGTCT 5044987 Query 70 AAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTT 129 ||| | |||| || ||||||||| ||||||||||||||||| | | ||||| |||| Sbjct 5044986 AAATCTAGCTTACATTCCCTATTGGTGGGTGAACAATCCAATACATGGTGAATTTTGCTC 5044927 Query 130 CGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTG 189 || |||| |||||| | |||| |||||||||||||||| ||||||||||||||||| Sbjct 5044926 AACAATAATAGAAAGAGCTGGCATCAAAGGATCAAAAAGCAATGTCGCTATGAACGCTTG 5044867 Query 190 GCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCG 249 ||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |||| Sbjct 5044866 TCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCTTCAAA-TTCG 5044808 Query 250 AGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | || ||||||| |||||||||| ||||||||||| |||||| Sbjct 5044807 AAGGTCTAAAGG--CGATAGGCCATGCTTTCATGGTTCGTATTC 5044766 Score = 149 bits (164), Expect = 1e-33 Identities = 116/137 (85%), Gaps = 1/137 (1%) Strand=Plus/Plus Query 146 GCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGT 205 |||||||||||||||| ||||||||| || |||||||| ||||||||||| |||||||| Sbjct 24050141 GCCGACATCGAAGGAT-AAAAAGCAATGTTGCTATGAATACTTGGCTGCCATAAGCCAGT 24050199 Query 206 TATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCG 265 ||||| | |||||||||||||| |||||||| | |||| ||| || || |||||| ||| Sbjct 24050200 TATCCTTATGGTAACTTTTCTGACACCTCTACCTTCAAGTTTTGAAGGTCTAAAGAATCA 24050259 Query 266 ATAGGCCACACTTTCAT 282 ||| || || |||| || Sbjct 24050260 ATAAGCTACGCTTTTAT 24050276 >seq2 Length=32417782 Score = 235 bits (260), Expect = 9e-60 Identities = 213/266 (80%), Gaps = 4/266 (2%) Strand=Plus/Minus Query 29 GGTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCC 88 |||||||| ||| |||||| |||||||||||| || || ||||||||| || |||| | Sbjct 16411366 GGTCATCACTAGAGTAAAATTAACCTGTCTCACGATGGCCTAAACCCAAACCATGTTCGC 16411307 Query 89 TATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCC 148 |||| ||||| ||||||| ||| || | ||||||| ||| ||||||||||||||| Sbjct 16411306 TATTGGTGGGAGAACAATTCAATACTCAGTGAATTCTATTTCACAATGATAGGAAGAGCC 16411247 Query 149 GACATCGAAGGATCAAAAAGC--AACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTT 206 ||||||||||||| ||||||| ||| || || |||| ||||||||| ||||||||| || Sbjct 16411246 GACATCGAAGGATAAAAAAGCAAAACATCACTGTGAAGGCTTGGCTGGCACAAGCCAATT 16411187 Query 207 ATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGA 266 |||||| | |||||||| || |||||||| ||||||| ||| | |||||||||||| Sbjct 16411186 ATCCCTACGATAACTTTTGTGACACCTCTAATTTCAAATTCCGAAAGTCTAAAGGATCGA 16411127 Query 267 TAGGCCACACTTTCATGGTTTGTATT 292 ||| || |||||| | || |||| Sbjct 16411126 TAG--CATGCTTTCACGATTCATATT 16411103 >seq10 Length=26335333 Score = 201 bits (222), Expect = 2e-49 Identities = 120/126 (95%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 153 TCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCT 212 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 18283049 TCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCT 18282990 Query 213 GTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCC 272 ||||||||||||||| |||||||||| ||||||| ||| || |||||||||||||||||| Sbjct 18282989 GTGGTAACTTTTCTGACACCTCTAGCTTCAAATTCCGAAGGTCTAAAGGATCGATAGGCC 18282930 Query 273 ACACTT 278 || ||| Sbjct 18282929 ACGCTT 18282924 >seq14 Length=24855542 Score = 89.7 bits (98), Expect = 9e-16 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 215 GGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCAC 274 ||||||||| ||| |||||||||| ||||||||| | || |||||| ||||||||||||| Sbjct 24763215 GGTAACTTTCCTGACACCTCTAGCTTCAAATTTCAAAGGTCTAAAGTATCGATAGGCCAC 24763274 Query 275 ACTTTCATGGTT 286 | ||||| |||| Sbjct 24763275 ATTTTCACGGTT 24763286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854382749664