Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10]
2,019 sequences; 582,117,524 total letters
Query= AAMG01001178.1
Length=367
Score E
Sequences producing significant alignments: (Bits) Value
seq2 136 8e-30
seq7 95.1 3e-17
seq15 77.0 7e-12
>seq2
Length=32417782
Score = 136 bits (150), Expect = 8e-30
Identities = 122/152 (80%), Gaps = 1/152 (1%)
Strand=Plus/Plus
Query 47 TCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCG 106
||||||||| |||||||| | || |||| | ||||||| |||| ||||||||||||| |
Sbjct 18982463 TCAGGCTTTTGCCCATTG-CAAAAATTCTCTACTGCTGTCTCCTGTAGGAGTCTGGATTG 18982521
Query 107 TGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGT 166
||||| ||| ||||||| || |||||||||| ||| | ||| ||| | ||||||||
Sbjct 18982522 TGTCTTAGTCCCAGTGTTGCTAATCATCCTCTTGGACTAACTACTAATCATTGCCTTGGT 18982581
Query 167 GAGCCATTACCTCACCAACTAGCTAATCCGAC 198
||| ||| | ||||||||| ||||||| |||
Sbjct 18982582 AAGCTATTGCTTCACCAACTTGCTAATCAGAC 18982613
Score = 125 bits (138), Expect = 2e-26
Identities = 122/153 (80%), Gaps = 3/153 (2%)
Strand=Plus/Plus
Query 47 TCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCG 106
||| ||||| |||||||| | || ||||| ||||||||||||||||||||||||| |
Sbjct 19036827 TCAAGCTTTTGCCCATTG-CGAAAATTCCATACTGCTGCCTCCCGTAGGAGTCTGGGTTG 19036885
Query 107 TGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGC-CTTGG 165
||||| || ||| |||| || |||||||||| ||| | ||| |||| |||| ||||
Sbjct 19036886 TGTCTTAG-TCCCGTGTTGCTAATCATCCTCTTGGACTAACTACTGATCATCGCTTTTGG 19036944
Query 166 TGAGCCATTACCTCACCAACTAGCTAATCCGAC 198
| ||| ||| | ||||||||| ||||||| |||
Sbjct 19036945 TAAGCTATTGCTTCACCAACTTGCTAATCAGAC 19036977
>seq7
Length=27069033
Score = 95.1 bits (104), Expect = 3e-17
Identities = 98/127 (77%), Gaps = 6/127 (5%)
Strand=Plus/Plus
Query 68 AATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACT 127
||||||| |||| |||| ||||||| | ||| | ||| ||||| ||||| || ||
Sbjct 1254292 AATATTC---ACTGTGGCCTTTCGTAGGATTTTGGGACATGTTTCAGTCCCAGTATGGCT 1254348
Query 128 GATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTA 187
||||||||||| ||||||| | ||| || ||||||| ||| ||| |||||||||||
Sbjct 1254349 GATCATCCTCTTAGACCAG---CTTATCATCACCTTGGTTAGCTATTGTCTCACCAACTA 1254405
Query 188 GCTAATC 194
|| ||||
Sbjct 1254406 GCAAATC 1254412
>seq15
Length=26192760
Score = 77.0 bits (84), Expect = 7e-12
Identities = 78/102 (76%), Gaps = 0/102 (0%)
Strand=Plus/Minus
Query 96 AGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATC 155
|||| || ||||||| ||| ||||| | || |||||||||||| || | || ||||
Sbjct 9753459 AGTCAGGGTCGTGTCTTAGTCCCAGTCTAGCTTATCATCCTCTCAAACTGGCTATTGATC 9753400
Query 156 GTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGA 197
|||| ||||| || ||| ||||| |||||||||||| ||
Sbjct 9753399 ATCGCTTTGGTAAGTTATTGCCTCATTAACTAGCTAATCAGA 9753358
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1071978356320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |