Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq2 136 8e-30 seq7 95.1 3e-17 seq15 77.0 7e-12 >seq2 Length=32417782 Score = 136 bits (150), Expect = 8e-30 Identities = 122/152 (80%), Gaps = 1/152 (1%) Strand=Plus/Plus Query 47 TCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCG 106 ||||||||| |||||||| | || |||| | ||||||| |||| ||||||||||||| | Sbjct 18982463 TCAGGCTTTTGCCCATTG-CAAAAATTCTCTACTGCTGTCTCCTGTAGGAGTCTGGATTG 18982521 Query 107 TGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGT 166 ||||| ||| ||||||| || |||||||||| ||| | ||| ||| | |||||||| Sbjct 18982522 TGTCTTAGTCCCAGTGTTGCTAATCATCCTCTTGGACTAACTACTAATCATTGCCTTGGT 18982581 Query 167 GAGCCATTACCTCACCAACTAGCTAATCCGAC 198 ||| ||| | ||||||||| ||||||| ||| Sbjct 18982582 AAGCTATTGCTTCACCAACTTGCTAATCAGAC 18982613 Score = 125 bits (138), Expect = 2e-26 Identities = 122/153 (80%), Gaps = 3/153 (2%) Strand=Plus/Plus Query 47 TCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCG 106 ||| ||||| |||||||| | || ||||| ||||||||||||||||||||||||| | Sbjct 19036827 TCAAGCTTTTGCCCATTG-CGAAAATTCCATACTGCTGCCTCCCGTAGGAGTCTGGGTTG 19036885 Query 107 TGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGC-CTTGG 165 ||||| || ||| |||| || |||||||||| ||| | ||| |||| |||| |||| Sbjct 19036886 TGTCTTAG-TCCCGTGTTGCTAATCATCCTCTTGGACTAACTACTGATCATCGCTTTTGG 19036944 Query 166 TGAGCCATTACCTCACCAACTAGCTAATCCGAC 198 | ||| ||| | ||||||||| ||||||| ||| Sbjct 19036945 TAAGCTATTGCTTCACCAACTTGCTAATCAGAC 19036977 >seq7 Length=27069033 Score = 95.1 bits (104), Expect = 3e-17 Identities = 98/127 (77%), Gaps = 6/127 (5%) Strand=Plus/Plus Query 68 AATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACT 127 ||||||| |||| |||| ||||||| | ||| | ||| ||||| ||||| || || Sbjct 1254292 AATATTC---ACTGTGGCCTTTCGTAGGATTTTGGGACATGTTTCAGTCCCAGTATGGCT 1254348 Query 128 GATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTA 187 ||||||||||| ||||||| | ||| || ||||||| ||| ||| ||||||||||| Sbjct 1254349 GATCATCCTCTTAGACCAG---CTTATCATCACCTTGGTTAGCTATTGTCTCACCAACTA 1254405 Query 188 GCTAATC 194 || |||| Sbjct 1254406 GCAAATC 1254412 >seq15 Length=26192760 Score = 77.0 bits (84), Expect = 7e-12 Identities = 78/102 (76%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 96 AGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATC 155 |||| || ||||||| ||| ||||| | || |||||||||||| || | || |||| Sbjct 9753459 AGTCAGGGTCGTGTCTTAGTCCCAGTCTAGCTTATCATCCTCTCAAACTGGCTATTGATC 9753400 Query 156 GTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGA 197 |||| ||||| || ||| ||||| |||||||||||| || Sbjct 9753399 ATCGCTTTGGTAAGTTATTGCCTCATTAACTAGCTAATCAGA 9753358 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071978356320