Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq8 100 1e-18 seq18 77.0 1e-11 >seq8 Length=34000172 Score = 100 bits (110), Expect = 1e-18 Identities = 121/165 (73%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196 ||||| ||| || ||||||| |||||||||||| | | | ||||| |||| |||||| Sbjct 28967847 GCTGCGCCTCAACACATTTCGAAGAGAACCAGCTAGCTCTAGATTTGAGTGGCATTTCAC 28967788 Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256 ||||| |||| |||||| || | |||||||| | ||| ||||| | ||||||| || Sbjct 28967787 CCCTAATCACAACTCATCCGCTAAATTTTCAACATGAGTCGGTTCAGACCTCCACTTAGT 28967728 Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCG 301 | || ||||| | | |||| ||||||||| | | |||| Sbjct 28967727 TTCACTTAAACTTCATTCCGATCATGTATAGATCACCTAGATTCG 28967683 >seq18 Length=25231592 Score = 77.0 bits (84), Expect = 1e-11 Identities = 76/95 (80%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 471 GTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTT 530 |||||| | ||||||||||||||| || || ||||||||| ||||| ||||||| || Sbjct 20349086 GTTTCATATTCTATTTCACTCCCCG-ATGGAGTTCTTTTCACCCTTCCC-CACGGTATTT 20349143 Query 531 GTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTA 565 |||||||| |||| |||||||||| | |||| Sbjct 20349144 ---CGCTATCGATCACGCAGGAGTATTTTGCCTTA 20349175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817563302656