Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10]
2,019 sequences; 582,117,524 total letters
Query= AAMG01001213.1
Length=600
Score E
Sequences producing significant alignments: (Bits) Value
seq8 100 1e-18
seq18 77.0 1e-11
>seq8
Length=34000172
Score = 100 bits (110), Expect = 1e-18
Identities = 121/165 (73%), Gaps = 0/165 (0%)
Strand=Plus/Minus
Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196
||||| ||| || ||||||| |||||||||||| | | | ||||| |||| ||||||
Sbjct 28967847 GCTGCGCCTCAACACATTTCGAAGAGAACCAGCTAGCTCTAGATTTGAGTGGCATTTCAC 28967788
Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256
||||| |||| |||||| || | |||||||| | ||| ||||| | ||||||| ||
Sbjct 28967787 CCCTAATCACAACTCATCCGCTAAATTTTCAACATGAGTCGGTTCAGACCTCCACTTAGT 28967728
Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCG 301
| || ||||| | | |||| ||||||||| | | ||||
Sbjct 28967727 TTCACTTAAACTTCATTCCGATCATGTATAGATCACCTAGATTCG 28967683
>seq18
Length=25231592
Score = 77.0 bits (84), Expect = 1e-11
Identities = 76/95 (80%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 471 GTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTT 530
|||||| | ||||||||||||||| || || ||||||||| ||||| ||||||| ||
Sbjct 20349086 GTTTCATATTCTATTTCACTCCCCG-ATGGAGTTCTTTTCACCCTTCCC-CACGGTATTT 20349143
Query 531 GTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTA 565
|||||||| |||| |||||||||| | ||||
Sbjct 20349144 ---CGCTATCGATCACGCAGGAGTATTTTGCCTTA 20349175
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1817563302656
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |