Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq18 93.3 1e-16 seq58 73.4 1e-10 >seq18 Length=25231592 Score = 93.3 bits (102), Expect = 1e-16 Identities = 131/180 (73%), Gaps = 8/180 (4%) Strand=Plus/Plus Query 188 GCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTG 247 ||||||| || ||||| || | |||| | ||| ||| |||| || | | || | Sbjct 20349003 GCCACTGCCTATGAGTCGTTGGCTCATTCTTCAACAGGCACGCGGTGAGAGCCCGAACTC 20349062 Query 248 GGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTT 307 ||||||||||||| || ||| |||||| ||||||||||||||| | || ||| Sbjct 20349063 --CTCCCACTGCTTGGGAGCTTACAGTTTCATATTCTATTTCACTCCCCGAT--GGAGTT 20349118 Query 308 CTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTT 367 |||||| || ||||| ||||| || ||| |||||| ||| ||| ||||||| ||||| Sbjct 20349119 CTTTTCACCCTTCCC-CACGG---TATTTCGCTATCGATCACGCAGGAGTATTTTGCCTT 20349174 >seq58 Length=238321 Score = 73.4 bits (80), Expect = 1e-10 Identities = 90/119 (76%), Gaps = 3/119 (3%) Strand=Plus/Plus Query 304 GGTTCTTTTCGCC-TTTCCCTCACGGTACTAGTTCACTATCGGTCAGTC-AGTAGTATTT 361 ||||||||| ||| ||| ||||| ||||||| ||| |||| | ||| | || ||||||| Sbjct 143366 GGTTCTTTTGGCCCTTTTCCTCATGGTACTACTTCGCTATTGATCACCCTAGGAGTATTT 143425 Query 362 AGCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 ||||||| | | |||| | | ||||| ||| | |||| |||| || | ||||||| Sbjct 143426 AGCCTTGCAAGGTGGTTCTGGCTGATTCACACAGAATTTCATGTGC-CCATGCTACTCG 143483 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241574932096