Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10]
2,019 sequences; 582,117,524 total letters
Query= AAMG01001291.1
Length=420
Score E
Sequences producing significant alignments: (Bits) Value
seq18 93.3 1e-16
seq58 73.4 1e-10
>seq18
Length=25231592
Score = 93.3 bits (102), Expect = 1e-16
Identities = 131/180 (73%), Gaps = 8/180 (4%)
Strand=Plus/Plus
Query 188 GCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTG 247
||||||| || ||||| || | |||| | ||| ||| |||| || | | || |
Sbjct 20349003 GCCACTGCCTATGAGTCGTTGGCTCATTCTTCAACAGGCACGCGGTGAGAGCCCGAACTC 20349062
Query 248 GGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTT 307
||||||||||||| || ||| |||||| ||||||||||||||| | || |||
Sbjct 20349063 --CTCCCACTGCTTGGGAGCTTACAGTTTCATATTCTATTTCACTCCCCGAT--GGAGTT 20349118
Query 308 CTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTT 367
|||||| || ||||| ||||| || ||| |||||| ||| ||| ||||||| |||||
Sbjct 20349119 CTTTTCACCCTTCCC-CACGG---TATTTCGCTATCGATCACGCAGGAGTATTTTGCCTT 20349174
>seq58
Length=238321
Score = 73.4 bits (80), Expect = 1e-10
Identities = 90/119 (76%), Gaps = 3/119 (3%)
Strand=Plus/Plus
Query 304 GGTTCTTTTCGCC-TTTCCCTCACGGTACTAGTTCACTATCGGTCAGTC-AGTAGTATTT 361
||||||||| ||| ||| ||||| ||||||| ||| |||| | ||| | || |||||||
Sbjct 143366 GGTTCTTTTGGCCCTTTTCCTCATGGTACTACTTCGCTATTGATCACCCTAGGAGTATTT 143425
Query 362 AGCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420
||||||| | | |||| | | ||||| ||| | |||| |||| || | |||||||
Sbjct 143426 AGCCTTGCAAGGTGGTTCTGGCTGATTCACACAGAATTTCATGTGC-CCATGCTACTCG 143483
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1241574932096
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |