Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10]
2,019 sequences; 582,117,524 total letters
Query= AAMG01001432.1
Length=344
Score E
Sequences producing significant alignments: (Bits) Value
seq2 96.9 7e-18
seq8 95.1 2e-17
seq7 80.6 5e-13
>seq2
Length=32417782
Score = 96.9 bits (106), Expect = 7e-18
Identities = 122/164 (74%), Gaps = 3/164 (2%)
Strand=Plus/Plus
Query 13 TCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCG 72
||| | ||| ||||||| | || || || |||||||||||||||||||||||||| |
Sbjct 19036827 TCAAGCTTTTGCCCATTGCGAAA-ATTCCATACTGCTGCCTCCCGTAGGAGTCTGGGTTG 19036885
Query 73 TGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCG-GCTTGG 131
||||| |||||| ||| || ||| ||||| | | |||| |||| ||| ||||
Sbjct 19036886 TGTCTTAGTCCC-GTGTTGCTAATCATCCTCTTGGACTAACTACTGATCATCGCTTTTGG 19036944
Query 132 TGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATC 175
| |||||| ||||||||| |||||| | ||| ||||| ||
Sbjct 19036945 TAAGCTATTGCTTCACCAACTTGCTAATCAGACGCAAGCCCCTC 19036988
Score = 87.8 bits (96), Expect = 4e-15
Identities = 120/165 (73%), Gaps = 2/165 (1%)
Strand=Plus/Plus
Query 13 TCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCG 72
||||| ||| ||||||| || || | | ||||||| |||| |||||||||||| |
Sbjct 18982463 TCAGGCTTTTGCCCATTGCAAAA-ATTCTCTACTGCTGTCTCCTGTAGGAGTCTGGATTG 18982521
Query 73 TGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGT 132
||||| ||||||| ||| || ||| ||||| | | |||| ||| | | ||||||
Sbjct 18982522 TGTCTTAGTCCCAGTGTTGCTAATCATCCTCTTGGACTAACTACTAATCATTGCCTTGGT 18982581
Query 133 GGGCTATTATCTCACCAACTACCTAATCGGCCGCGAG-CCCATCT 176
|||||| ||||||||| |||||| | ||| || ||| |||
Sbjct 18982582 AAGCTATTGCTTCACCAACTTGCTAATCAGACGCAAGTCCCTTCT 18982626
>seq8
Length=34000172
Score = 95.1 bits (104), Expect = 2e-17
Identities = 167/241 (69%), Gaps = 18/241 (7%)
Strand=Plus/Plus
Query 66 TGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCG 125
|||||||| ||||||||||| ||||| | ||| | |||| | || ||||| |||| ||
Sbjct 8831374 TGGGCCGTCTCTCAGTCCCAGGGTGGCTGATCATCTTCTCGGACCCGCTACTGATCATCA 8831433
Query 126 GCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCAGC-GA 184
||| || |||||| |||| ||| || |||||| | | || ||| |||| ||| ||
Sbjct 8831434 CCTTTGTATGCTATTGCCTCATCAAGTAGCTAATCAGACATGAACCCCTCTTCAAGCAGA 8831493
Query 185 TAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTTCGTTT 244
| || || ||| ||||| | | |||| | ||||||| ||||
Sbjct 8831494 TTTCTCCTT------------TTGC--TCCTCAGCC--TATGGGATATTAGCAACTGTTT 8831537
Query 245 CCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCGCCACT 304
| | ||| |||| || || |||||||| | ||||||||||||||||| |||||||
Sbjct 8831538 CTAGCTGTTGTTCCCCTTCCAAGGGCAGGTT-TTTACGTGTTACTCACCCGTTCGCCACT 8831596
Query 305 A 305
|
Sbjct 8831597 A 8831597
>seq7
Length=27069033
Score = 80.6 bits (88), Expect = 5e-13
Identities = 89/118 (75%), Gaps = 3/118 (3%)
Strand=Plus/Plus
Query 43 CACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCT 102
||||| |||| ||||||| | |||| | ||| ||||||||| | |||| | ||| |||
Sbjct 1254298 CACTGTGGCCTTTCGTAGGATTTTGGGACATGTTTCAGTCCCAGTATGGCTGATCATCCT 1254357
Query 103 CTCAGTCCGGCTACCGATCGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATC 160
|| || || ||| ||| || |||||| |||||| |||||||||||| | ||||
Sbjct 1254358 CTTAGACCAGCTT---ATCATCACCTTGGTTAGCTATTGTCTCACCAACTAGCAAATC 1254412
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 998379842304
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |