Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= AAMG01001432.1 Length=344 Score E Sequences producing significant alignments: (Bits) Value seq2 96.9 7e-18 seq8 95.1 2e-17 seq7 80.6 5e-13 >seq2 Length=32417782 Score = 96.9 bits (106), Expect = 7e-18 Identities = 122/164 (74%), Gaps = 3/164 (2%) Strand=Plus/Plus Query 13 TCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCG 72 ||| | ||| ||||||| | || || || |||||||||||||||||||||||||| | Sbjct 19036827 TCAAGCTTTTGCCCATTGCGAAA-ATTCCATACTGCTGCCTCCCGTAGGAGTCTGGGTTG 19036885 Query 73 TGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCG-GCTTGG 131 ||||| |||||| ||| || ||| ||||| | | |||| |||| ||| |||| Sbjct 19036886 TGTCTTAGTCCC-GTGTTGCTAATCATCCTCTTGGACTAACTACTGATCATCGCTTTTGG 19036944 Query 132 TGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATC 175 | |||||| ||||||||| |||||| | ||| ||||| || Sbjct 19036945 TAAGCTATTGCTTCACCAACTTGCTAATCAGACGCAAGCCCCTC 19036988 Score = 87.8 bits (96), Expect = 4e-15 Identities = 120/165 (73%), Gaps = 2/165 (1%) Strand=Plus/Plus Query 13 TCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCG 72 ||||| ||| ||||||| || || | | ||||||| |||| |||||||||||| | Sbjct 18982463 TCAGGCTTTTGCCCATTGCAAAA-ATTCTCTACTGCTGTCTCCTGTAGGAGTCTGGATTG 18982521 Query 73 TGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGT 132 ||||| ||||||| ||| || ||| ||||| | | |||| ||| | | |||||| Sbjct 18982522 TGTCTTAGTCCCAGTGTTGCTAATCATCCTCTTGGACTAACTACTAATCATTGCCTTGGT 18982581 Query 133 GGGCTATTATCTCACCAACTACCTAATCGGCCGCGAG-CCCATCT 176 |||||| ||||||||| |||||| | ||| || ||| ||| Sbjct 18982582 AAGCTATTGCTTCACCAACTTGCTAATCAGACGCAAGTCCCTTCT 18982626 >seq8 Length=34000172 Score = 95.1 bits (104), Expect = 2e-17 Identities = 167/241 (69%), Gaps = 18/241 (7%) Strand=Plus/Plus Query 66 TGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCG 125 |||||||| ||||||||||| ||||| | ||| | |||| | || ||||| |||| || Sbjct 8831374 TGGGCCGTCTCTCAGTCCCAGGGTGGCTGATCATCTTCTCGGACCCGCTACTGATCATCA 8831433 Query 126 GCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCAGC-GA 184 ||| || |||||| |||| ||| || |||||| | | || ||| |||| ||| || Sbjct 8831434 CCTTTGTATGCTATTGCCTCATCAAGTAGCTAATCAGACATGAACCCCTCTTCAAGCAGA 8831493 Query 185 TAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTTCGTTT 244 | || || ||| ||||| | | |||| | ||||||| |||| Sbjct 8831494 TTTCTCCTT------------TTGC--TCCTCAGCC--TATGGGATATTAGCAACTGTTT 8831537 Query 245 CCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCGCCACT 304 | | ||| |||| || || |||||||| | ||||||||||||||||| ||||||| Sbjct 8831538 CTAGCTGTTGTTCCCCTTCCAAGGGCAGGTT-TTTACGTGTTACTCACCCGTTCGCCACT 8831596 Query 305 A 305 | Sbjct 8831597 A 8831597 >seq7 Length=27069033 Score = 80.6 bits (88), Expect = 5e-13 Identities = 89/118 (75%), Gaps = 3/118 (3%) Strand=Plus/Plus Query 43 CACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCT 102 ||||| |||| ||||||| | |||| | ||| ||||||||| | |||| | ||| ||| Sbjct 1254298 CACTGTGGCCTTTCGTAGGATTTTGGGACATGTTTCAGTCCCAGTATGGCTGATCATCCT 1254357 Query 103 CTCAGTCCGGCTACCGATCGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATC 160 || || || ||| ||| || |||||| |||||| |||||||||||| | |||| Sbjct 1254358 CTTAGACCAGCTT---ATCATCACCTTGGTTAGCTATTGTCTCACCAACTAGCAAATC 1254412 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 998379842304