Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10]
2,019 sequences; 582,117,524 total letters
Query= AAMG01001962.1
Length=275
Score E
Sequences producing significant alignments: (Bits) Value
seq13 125 1e-26
seq16 113 7e-23
seq17 75.2 2e-11
>seq13
Length=28119335
Score = 125 bits (138), Expect = 1e-26
Identities = 154/211 (73%), Gaps = 12/211 (6%)
Strand=Plus/Minus
Query 22 ATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC-TATGCACTTGGCAGTACA 80
|||| |||||| |||||| ||| |||| || ||||| | | | | ||| | |
Sbjct 6967083 ATGCTTTCAGCAGTTATCCGCTCCGCACTTGACTATCCAGCGTTTATAGTGAGCACGATA 6967024
Query 81 ACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAA 140
|||||| |||||||||| |||| ||||| ||||||| ||||| ||| || |||||||||
Sbjct 6967023 ACTGGTACACCAGAGGTGCGTCCTTCCCGATCCTCTCATACTAGGGAAAGGTCCTCTCAA 6966964
Query 141 ATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTC 200
|| ||||||| || ||| ||||||||||| |||||||||| |||
Sbjct 6966963 TGCTCTAACGCCCATACCGAATATGGACCGAACTG-----------TCTGAACCCAACTC 6966915
Query 201 GCGTGCCTCTTTAATGGGCGAACAGCCCAAC 231
|||||| |||||||||| ||| | ||||||
Sbjct 6966914 ACGTGCCGCTTTAATGGGTGAAGAACCCAAC 6966884
>seq16
Length=28979753
Score = 113 bits (124), Expect = 7e-23
Identities = 133/179 (74%), Gaps = 1/179 (1%)
Strand=Plus/Plus
Query 27 TTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC-TATGCACTTGGCAGTACAACTGG 85
|||||| |||||| || |||| ||| ||||| | | | | |||| | |||||
Sbjct 3849311 TTCAGCAGTTATCCATTTTGCACTTGGCTACCCAGTGTTTACTGTGGGCACGATTACTGG 3849370
Query 86 TGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTC 145
| |||||||||| |||| |||||||| | |||||||| ||| | || |||||| ||
Sbjct 3849371 TACACCAGAGGTGCGTCCTTCCCGGTCTTTTCGTACTAGGGAAATATCATCTCAATGCTC 3849430
Query 146 CTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGT 204
|||||||| || ||| |||||||| | |||| |||| || |||||||||||| |||
Sbjct 3849431 TAACGCCCACATCGAATATGGACCGAATTATCTCACGACATTATGAACCCAGCTCACGT 3849489
>seq17
Length=27373735
Score = 75.2 bits (82), Expect = 2e-11
Identities = 56/66 (85%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 210 TTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCG 269
||||||||||||||||||||||| |||| || |||| ||| |||| | | || ||||||
Sbjct 21586914 TTTAATGGGCGAACAGCCCAACCTTTGGAACATACTACAGTCCCATGTGGCGAAGAGCCG 21586973
Query 270 ACATCG 275
||||||
Sbjct 21586974 ACATCG 21586979
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 780784728284
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |