Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq13 125 1e-26 seq16 113 7e-23 seq17 75.2 2e-11 >seq13 Length=28119335 Score = 125 bits (138), Expect = 1e-26 Identities = 154/211 (73%), Gaps = 12/211 (6%) Strand=Plus/Minus Query 22 ATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC-TATGCACTTGGCAGTACA 80 |||| |||||| |||||| ||| |||| || ||||| | | | | ||| | | Sbjct 6967083 ATGCTTTCAGCAGTTATCCGCTCCGCACTTGACTATCCAGCGTTTATAGTGAGCACGATA 6967024 Query 81 ACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAA 140 |||||| |||||||||| |||| ||||| ||||||| ||||| ||| || ||||||||| Sbjct 6967023 ACTGGTACACCAGAGGTGCGTCCTTCCCGATCCTCTCATACTAGGGAAAGGTCCTCTCAA 6966964 Query 141 ATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTC 200 || ||||||| || ||| ||||||||||| |||||||||| ||| Sbjct 6966963 TGCTCTAACGCCCATACCGAATATGGACCGAACTG-----------TCTGAACCCAACTC 6966915 Query 201 GCGTGCCTCTTTAATGGGCGAACAGCCCAAC 231 |||||| |||||||||| ||| | |||||| Sbjct 6966914 ACGTGCCGCTTTAATGGGTGAAGAACCCAAC 6966884 >seq16 Length=28979753 Score = 113 bits (124), Expect = 7e-23 Identities = 133/179 (74%), Gaps = 1/179 (1%) Strand=Plus/Plus Query 27 TTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC-TATGCACTTGGCAGTACAACTGG 85 |||||| |||||| || |||| ||| ||||| | | | | |||| | ||||| Sbjct 3849311 TTCAGCAGTTATCCATTTTGCACTTGGCTACCCAGTGTTTACTGTGGGCACGATTACTGG 3849370 Query 86 TGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTC 145 | |||||||||| |||| |||||||| | |||||||| ||| | || |||||| || Sbjct 3849371 TACACCAGAGGTGCGTCCTTCCCGGTCTTTTCGTACTAGGGAAATATCATCTCAATGCTC 3849430 Query 146 CTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGT 204 |||||||| || ||| |||||||| | |||| |||| || |||||||||||| ||| Sbjct 3849431 TAACGCCCACATCGAATATGGACCGAATTATCTCACGACATTATGAACCCAGCTCACGT 3849489 >seq17 Length=27373735 Score = 75.2 bits (82), Expect = 2e-11 Identities = 56/66 (85%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 210 TTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCG 269 ||||||||||||||||||||||| |||| || |||| ||| |||| | | || |||||| Sbjct 21586914 TTTAATGGGCGAACAGCCCAACCTTTGGAACATACTACAGTCCCATGTGGCGAAGAGCCG 21586973 Query 270 ACATCG 275 |||||| Sbjct 21586974 ACATCG 21586979 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780784728284