Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq2 125 2e-26 >seq2 Length=32417782 Score = 125 bits (138), Expect = 2e-26 Identities = 143/191 (75%), Gaps = 1/191 (1%) Strand=Plus/Plus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 || || ||||| ||||||||| | ||||| | || ||| |||||||| ||||||| Sbjct 18982420 TTCACGACCCGTAGGCCTTCTACCTACACACAATATTGCTCTGTCAGGCTTTTGCCCATT 18982479 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 | || |||| | ||||||| |||| ||||||||||||| |||||| ||| ||||||| Sbjct 18982480 GCAAAA-ATTCTCTACTGCTGTCTCCTGTAGGAGTCTGGATTGTGTCTTAGTCCCAGTGT 18982538 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 ||| ||||||||| ||| | ||| ||| | |||| ||| || ||| | | ||| Sbjct 18982539 TGCTAATCATCCTCTTGGACTAACTACTAATCATTGCCTTGGTAAGCTATTGCTTCACCA 18982598 Query 185 ACTAGCTAATC 195 ||| ||||||| Sbjct 18982599 ACTTGCTAATC 18982609 Score = 111 bits (122), Expect = 4e-22 Identities = 142/192 (74%), Gaps = 3/192 (2%) Strand=Plus/Plus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 || || || || ||||||||| | | || | ||| ||| ||| |||| ||||||| Sbjct 19036784 TTCACGACACGTAGGCCTTCTACCTCCATATGACATTGCTCTGTCAAGCTTTTGCCCATT 19036843 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 | | || ||||| ||||||||||||||||||||||||| |||||| || ||| |||| Sbjct 19036844 GCGAAA-ATTCCATACTGCTGCCTCCCGTAGGAGTCTGGGTTGTGTCTTAG-TCCCGTGT 19036901 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGC-CTAGGTGGGCCATTACCCCGCC 183 ||| ||||||||| ||| | ||| |||| |||| | ||| || ||| | | || Sbjct 19036902 TGCTAATCATCCTCTTGGACTAACTACTGATCATCGCTTTTGGTAAGCTATTGCTTCACC 19036961 Query 184 AACTAGCTAATC 195 |||| ||||||| Sbjct 19036962 AACTTGCTAATC 19036973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1222375319744