Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10]
2,019 sequences; 582,117,524 total letters
Query= AAMG01002175.1
Length=414
Score E
Sequences producing significant alignments: (Bits) Value
seq2 125 2e-26
>seq2
Length=32417782
Score = 125 bits (138), Expect = 2e-26
Identities = 143/191 (75%), Gaps = 1/191 (1%)
Strand=Plus/Plus
Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64
|| || ||||| ||||||||| | ||||| | || ||| |||||||| |||||||
Sbjct 18982420 TTCACGACCCGTAGGCCTTCTACCTACACACAATATTGCTCTGTCAGGCTTTTGCCCATT 18982479
Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124
| || |||| | ||||||| |||| ||||||||||||| |||||| ||| |||||||
Sbjct 18982480 GCAAAA-ATTCTCTACTGCTGTCTCCTGTAGGAGTCTGGATTGTGTCTTAGTCCCAGTGT 18982538
Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184
||| ||||||||| ||| | ||| ||| | |||| ||| || ||| | | |||
Sbjct 18982539 TGCTAATCATCCTCTTGGACTAACTACTAATCATTGCCTTGGTAAGCTATTGCTTCACCA 18982598
Query 185 ACTAGCTAATC 195
||| |||||||
Sbjct 18982599 ACTTGCTAATC 18982609
Score = 111 bits (122), Expect = 4e-22
Identities = 142/192 (74%), Gaps = 3/192 (2%)
Strand=Plus/Plus
Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64
|| || || || ||||||||| | | || | ||| ||| ||| |||| |||||||
Sbjct 19036784 TTCACGACACGTAGGCCTTCTACCTCCATATGACATTGCTCTGTCAAGCTTTTGCCCATT 19036843
Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124
| | || ||||| ||||||||||||||||||||||||| |||||| || ||| ||||
Sbjct 19036844 GCGAAA-ATTCCATACTGCTGCCTCCCGTAGGAGTCTGGGTTGTGTCTTAG-TCCCGTGT 19036901
Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGC-CTAGGTGGGCCATTACCCCGCC 183
||| ||||||||| ||| | ||| |||| |||| | ||| || ||| | | ||
Sbjct 19036902 TGCTAATCATCCTCTTGGACTAACTACTGATCATCGCTTTTGGTAAGCTATTGCTTCACC 19036961
Query 184 AACTAGCTAATC 195
|||| |||||||
Sbjct 19036962 AACTTGCTAATC 19036973
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1222375319744
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |