Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10]
2,019 sequences; 582,117,524 total letters
Query= AAMG01002180.1
Length=500
Score E
Sequences producing significant alignments: (Bits) Value
seq2 185 3e-44
seq8 84.2 7e-14
>seq2
Length=32417782
Score = 185 bits (204), Expect = 3e-44
Identities = 249/342 (73%), Gaps = 6/342 (2%)
Strand=Plus/Minus
Query 161 GCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACC 220
||||||||||||| ||||||| | | || |||||||||||| | ||| ||||| |
Sbjct 18982615 GCGTCTGATTAGCAAGTTGGTGAAGCAATAGCTTACCAAGGCAATGATTAGTAGTTAGTC 18982556
Query 221 TGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGC 280
||||| |||| || ||| ||| ||| |||||| |||| |||||||| |||| ||||
Sbjct 18982555 CAAGAGGATGATTAGCAACACTGGGACTAAGACACAATCCAGACTCCTACAGGAGACAGC 18982496
Query 281 AGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAA 340
||| | |||| || |||||||||||||||||| ||||| | ||| | |||
Sbjct 18982495 AGTAGAGAAT-TTTTGCAATGGGCAAAAGCCTGACAGAGCAATATTGTGTGTAGGTAGAA 18982437
Query 341 GGCCTTCGGGTCGTAAAGCTCTGTCCT---CAAGGAAGATAATGACGGTACTTGAGGAGG 397
||||| |||||||| || ||| | || || |||| |||||| || || | |
Sbjct 18982436 GGCCTACGGGTCGTGAACTTCTTTTCTTGGAAAAGAAG-CAATGACAATATCTGGGAAAT 18982378
Query 398 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 457
|||| | ||||| || ||| |||||||| || |||| ||| || ||||||||||
Sbjct 18982377 AAGCATCAGCTAAATATGTGTTAGCAGCCGTAGTGATACAGAGGATGCAAGCGTTATCCA 18982318
Query 458 GAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGT 499
||| | | |||||||||| || |||||||| || ||||||
Sbjct 18982317 GAA-TGGTTGGGCGTAAAGTGTTTGTAGGTGGCTTTTTAAGT 18982277
Score = 147 bits (162), Expect = 7e-33
Identities = 242/343 (71%), Gaps = 6/343 (2%)
Strand=Plus/Minus
Query 161 GCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAG-GCGACGATCAGTAGCCGAC 219
||||||||||||| ||||||| | | || ||||||||| |||| |||||||||
Sbjct 19036979 GCGTCTGATTAGCAAGTTGGTGAAGCAATAGCTTACCAAAAGCGATGATCAGTAGTTAGT 19036920
Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279
| ||||| |||| || ||| ||| || |||||| ||| |||||||||||||||||
Sbjct 19036919 CCAAGAGGATGATTAGCAACACGGGA-CTAAGACACAACCCAGACTCCTACGGGAGGCAG 19036861
Query 280 CAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGA 339
|||| ||||| || | |||||||||||||| ||| ||||| | | || | ||
Sbjct 19036860 CAGTATGGAAT-TTTCGCAATGGGCAAAAGCTTGACAGAGCAATGTCATATGGAGGTAGA 19036802
Query 340 AGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGA--TAATGACGGTACTTGAGGAGG 397
|||||| || ||||| || ||| | ||| ||||| |||||| || | |
Sbjct 19036801 AGGCCTACGTGTCGTGAACTTCTTTTCTCGGAGAAGAAGCAATGACAATATCTAGTAAAT 19036742
Query 398 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 457
|||| || |||| | |||||| | ||| |||||| ||| || || |||||||
Sbjct 19036741 AAGCATCGACTAATTCTGTGCCAATAACCGTAGTAATATAGAGGATGCAAGTGTTATCCA 19036682
Query 458 GAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500
||| | | |||||||||| | ||| |||| || | |||||
Sbjct 19036681 GAA-TGGTTGGGCGTAAAGCATCTGTATGTGGCTTTTCAAGTC 19036640
>seq8
Length=34000172
Score = 84.2 bits (92), Expect = 7e-14
Identities = 79/101 (78%), Gaps = 0/101 (0%)
Strand=Plus/Minus
Query 163 GTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTG 222
||||||||||||| ||| | ||| || || ||| |||| || |||||||||| | | |
Sbjct 8831472 GTCTGATTAGCTACTTGATGAGGCAATAGCATACAAAGGTGATGATCAGTAGCGGGTCCG 8831413
Query 223 AGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAA 263
||| | ||||| ||||| ||| ||||||| |||| |||||
Sbjct 8831412 AGAAGATGATCAGCCACCCTGGGACTGAGAGACGGCCCAAA 8831372
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1497569763456
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |