Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq2 185 3e-44 seq8 84.2 7e-14 >seq2 Length=32417782 Score = 185 bits (204), Expect = 3e-44 Identities = 249/342 (73%), Gaps = 6/342 (2%) Strand=Plus/Minus Query 161 GCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACC 220 ||||||||||||| ||||||| | | || |||||||||||| | ||| ||||| | Sbjct 18982615 GCGTCTGATTAGCAAGTTGGTGAAGCAATAGCTTACCAAGGCAATGATTAGTAGTTAGTC 18982556 Query 221 TGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGC 280 ||||| |||| || ||| ||| ||| |||||| |||| |||||||| |||| |||| Sbjct 18982555 CAAGAGGATGATTAGCAACACTGGGACTAAGACACAATCCAGACTCCTACAGGAGACAGC 18982496 Query 281 AGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAA 340 ||| | |||| || |||||||||||||||||| ||||| | ||| | ||| Sbjct 18982495 AGTAGAGAAT-TTTTGCAATGGGCAAAAGCCTGACAGAGCAATATTGTGTGTAGGTAGAA 18982437 Query 341 GGCCTTCGGGTCGTAAAGCTCTGTCCT---CAAGGAAGATAATGACGGTACTTGAGGAGG 397 ||||| |||||||| || ||| | || || |||| |||||| || || | | Sbjct 18982436 GGCCTACGGGTCGTGAACTTCTTTTCTTGGAAAAGAAG-CAATGACAATATCTGGGAAAT 18982378 Query 398 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 457 |||| | ||||| || ||| |||||||| || |||| ||| || |||||||||| Sbjct 18982377 AAGCATCAGCTAAATATGTGTTAGCAGCCGTAGTGATACAGAGGATGCAAGCGTTATCCA 18982318 Query 458 GAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGT 499 ||| | | |||||||||| || |||||||| || |||||| Sbjct 18982317 GAA-TGGTTGGGCGTAAAGTGTTTGTAGGTGGCTTTTTAAGT 18982277 Score = 147 bits (162), Expect = 7e-33 Identities = 242/343 (71%), Gaps = 6/343 (2%) Strand=Plus/Minus Query 161 GCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAG-GCGACGATCAGTAGCCGAC 219 ||||||||||||| ||||||| | | || ||||||||| |||| ||||||||| Sbjct 19036979 GCGTCTGATTAGCAAGTTGGTGAAGCAATAGCTTACCAAAAGCGATGATCAGTAGTTAGT 19036920 Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279 | ||||| |||| || ||| ||| || |||||| ||| ||||||||||||||||| Sbjct 19036919 CCAAGAGGATGATTAGCAACACGGGA-CTAAGACACAACCCAGACTCCTACGGGAGGCAG 19036861 Query 280 CAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGA 339 |||| ||||| || | |||||||||||||| ||| ||||| | | || | || Sbjct 19036860 CAGTATGGAAT-TTTCGCAATGGGCAAAAGCTTGACAGAGCAATGTCATATGGAGGTAGA 19036802 Query 340 AGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGA--TAATGACGGTACTTGAGGAGG 397 |||||| || ||||| || ||| | ||| ||||| |||||| || | | Sbjct 19036801 AGGCCTACGTGTCGTGAACTTCTTTTCTCGGAGAAGAAGCAATGACAATATCTAGTAAAT 19036742 Query 398 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 457 |||| || |||| | |||||| | ||| |||||| ||| || || ||||||| Sbjct 19036741 AAGCATCGACTAATTCTGTGCCAATAACCGTAGTAATATAGAGGATGCAAGTGTTATCCA 19036682 Query 458 GAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 ||| | | |||||||||| | ||| |||| || | ||||| Sbjct 19036681 GAA-TGGTTGGGCGTAAAGCATCTGTATGTGGCTTTTCAAGTC 19036640 >seq8 Length=34000172 Score = 84.2 bits (92), Expect = 7e-14 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 163 GTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTG 222 ||||||||||||| ||| | ||| || || ||| |||| || |||||||||| | | | Sbjct 8831472 GTCTGATTAGCTACTTGATGAGGCAATAGCATACAAAGGTGATGATCAGTAGCGGGTCCG 8831413 Query 223 AGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAA 263 ||| | ||||| ||||| ||| ||||||| |||| ||||| Sbjct 8831412 AGAAGATGATCAGCCACCCTGGGACTGAGAGACGGCCCAAA 8831372 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497569763456