Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq2 145 2e-32 >seq2 Length=32417782 Score = 145 bits (160), Expect = 2e-32 Identities = 232/329 (71%), Gaps = 3/329 (1%) Strand=Plus/Minus Query 13 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 72 |||| | ||||| || ||| |||||||| || |||| ||| || |||||||||| Sbjct 18982377 AAGCATCAGCTAAATATGTGTTAGCAGCCGTAGTGATACAGAGGATGCAAGCGTTATCCA 18982318 Query 73 GAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGG 132 |||| ||||||||||| || |||||||| || |||||| | | ||| | | || Sbjct 18982317 GAATGGTTGGGCGTAAAGTGTTTGTAGGTGGCTTTTTAAGTTCGCCATCAAATCCCAAGG 18982258 Query 133 CTCAACCCCGGGACTGCTTTTG-AAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAA 191 |||||||| || || | | || ||| ||| ||||||||| || ||||||| ||| Sbjct 18982257 CTCAACCCTGG-ACAGGTGATGGAAATTGCCAAGCTAGAGTGTAGTAGGGGCAGAGAGAA 18982199 Query 192 TTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCT 251 || | ||| |||||| ||||||||||| ||| | | |||||||| |||| || || Sbjct 18982198 TTTCCGGTGGAGCGGTAAAATGCGTAGAGATTTGAAAGAACACCAATGGCAAAAGCACAC 18982139 Query 252 TGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACC 311 || | ||||||||||| |||| | |||||| || ||||| |||| Sbjct 18982138 CAACGGTC-AACACTGACACTGAAAGAGGAAAACTAGGGGAGTGAATGGGATTGGATATT 18982080 Query 312 CTGGTAGTCCACGCCGTAAACGATGAATA 340 | |||||| ||||||||||||| ||| Sbjct 18982079 ATAGTAGTCTTAGCCGTAAACGATGGATA 18982051 Score = 125 bits (138), Expect = 2e-26 Identities = 272/400 (68%), Gaps = 9/400 (2%) Strand=Plus/Minus Query 13 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 72 |||| || |||| | |||||| | ||| |||||| ||| || || ||||||| Sbjct 19036741 AAGCATCGACTAATTCTGTGCCAATAACCGTAGTAATATAGAGGATGCAAGTGTTATCCA 19036682 Query 73 GAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGG 132 |||| ||||||||||| | ||| |||| || | ||||| | | ||| | | || Sbjct 19036681 GAATGGTTGGGCGTAAAGCATCTGTATGTGGCTTTTCAAGTCTGCCATCAAATCCCAAGG 19036622 Query 133 CTCAACCCCGGGACTG-CTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAA 191 ||||| ||| |||| | | | |||| ||| |||||||| ||| ||||| |||| Sbjct 19036621 CTCAA-CCCTGGACAGACGGTGGAAATTGCCAAGCTAGAGTACAGTAGGGGTGGAGGGAA 19036563 Query 192 TTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCT 251 || || || ||| || |||||| |||| || | |||||||| |||| || || Sbjct 19036562 TTTCTGATGGAGCAGTAAAATGCATAGAGATCTAAAAGAACACCAATGGCTAAAGCACAC 19036503 Query 252 TGCTGGACTGTAAC--TGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATA 309 ||| | ||| ||||| |||| || |||| |||||| || |||||||||| Sbjct 19036502 CAATGGTC---AACATTGACATTGAGAGACGGAAGCTAGGGGAGTGAATGGGATTAGATA 19036446 Query 310 CCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCAT-AAGTGCTCCG 368 | | |||||| ||||||||||||| ||| | || | | ||| || | | | | Sbjct 19036445 CTGTAGTAGTCGTAGCCGTAAACGATGGATA-TTGGGCACTGTGCGTATCGATTCGTGCA 19036387 Query 369 GTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 || | | ||| |||||| ||||||| | | ||||||||| Sbjct 19036386 GTACGGTAGCTAACGCATTAAGTATCTCGCTTGGGGAGTA 19036347 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203175707392