Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10]
2,019 sequences; 582,117,524 total letters
Query= AAMG01002183.1
Length=408
Score E
Sequences producing significant alignments: (Bits) Value
seq2 145 2e-32
>seq2
Length=32417782
Score = 145 bits (160), Expect = 2e-32
Identities = 232/329 (71%), Gaps = 3/329 (1%)
Strand=Plus/Minus
Query 13 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 72
|||| | ||||| || ||| |||||||| || |||| ||| || ||||||||||
Sbjct 18982377 AAGCATCAGCTAAATATGTGTTAGCAGCCGTAGTGATACAGAGGATGCAAGCGTTATCCA 18982318
Query 73 GAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGG 132
|||| ||||||||||| || |||||||| || |||||| | | ||| | | ||
Sbjct 18982317 GAATGGTTGGGCGTAAAGTGTTTGTAGGTGGCTTTTTAAGTTCGCCATCAAATCCCAAGG 18982258
Query 133 CTCAACCCCGGGACTGCTTTTG-AAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAA 191
|||||||| || || | | || ||| ||| ||||||||| || ||||||| |||
Sbjct 18982257 CTCAACCCTGG-ACAGGTGATGGAAATTGCCAAGCTAGAGTGTAGTAGGGGCAGAGAGAA 18982199
Query 192 TTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCT 251
|| | ||| |||||| ||||||||||| ||| | | |||||||| |||| || ||
Sbjct 18982198 TTTCCGGTGGAGCGGTAAAATGCGTAGAGATTTGAAAGAACACCAATGGCAAAAGCACAC 18982139
Query 252 TGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACC 311
|| | ||||||||||| |||| | |||||| || ||||| ||||
Sbjct 18982138 CAACGGTC-AACACTGACACTGAAAGAGGAAAACTAGGGGAGTGAATGGGATTGGATATT 18982080
Query 312 CTGGTAGTCCACGCCGTAAACGATGAATA 340
| |||||| ||||||||||||| |||
Sbjct 18982079 ATAGTAGTCTTAGCCGTAAACGATGGATA 18982051
Score = 125 bits (138), Expect = 2e-26
Identities = 272/400 (68%), Gaps = 9/400 (2%)
Strand=Plus/Minus
Query 13 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 72
|||| || |||| | |||||| | ||| |||||| ||| || || |||||||
Sbjct 19036741 AAGCATCGACTAATTCTGTGCCAATAACCGTAGTAATATAGAGGATGCAAGTGTTATCCA 19036682
Query 73 GAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGG 132
|||| ||||||||||| | ||| |||| || | ||||| | | ||| | | ||
Sbjct 19036681 GAATGGTTGGGCGTAAAGCATCTGTATGTGGCTTTTCAAGTCTGCCATCAAATCCCAAGG 19036622
Query 133 CTCAACCCCGGGACTG-CTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAA 191
||||| ||| |||| | | | |||| ||| |||||||| ||| ||||| ||||
Sbjct 19036621 CTCAA-CCCTGGACAGACGGTGGAAATTGCCAAGCTAGAGTACAGTAGGGGTGGAGGGAA 19036563
Query 192 TTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCT 251
|| || || ||| || |||||| |||| || | |||||||| |||| || ||
Sbjct 19036562 TTTCTGATGGAGCAGTAAAATGCATAGAGATCTAAAAGAACACCAATGGCTAAAGCACAC 19036503
Query 252 TGCTGGACTGTAAC--TGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATA 309
||| | ||| ||||| |||| || |||| |||||| || ||||||||||
Sbjct 19036502 CAATGGTC---AACATTGACATTGAGAGACGGAAGCTAGGGGAGTGAATGGGATTAGATA 19036446
Query 310 CCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCAT-AAGTGCTCCG 368
| | |||||| ||||||||||||| ||| | || | | ||| || | | | |
Sbjct 19036445 CTGTAGTAGTCGTAGCCGTAAACGATGGATA-TTGGGCACTGTGCGTATCGATTCGTGCA 19036387
Query 369 GTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408
|| | | ||| |||||| ||||||| | | |||||||||
Sbjct 19036386 GTACGGTAGCTAACGCATTAAGTATCTCGCTTGGGGAGTA 19036347
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203175707392
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |