Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq1171 242 7e-62 seq17 183 6e-44 seq16 116 7e-24 >seq1171 Length=10373 Score = 242 bits (268), Expect = 7e-62 Identities = 214/264 (81%), Gaps = 6/264 (2%) Strand=Plus/Plus Query 67 GCCGGCTTCTTAGAGGGACTATCGGCTC--AAGCCGATGGAAGTTTGAGGCAATAACAGG 124 ||| |||||||||||||||||| | || ||||| | | || ||||||||||||||||| Sbjct 3610 GCCAGCTTCTTAGAGGGACTATGGCCTTTTAAGCCAA-GAAAATTTGAGGCAATAACAGG 3668 Query 125 TCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGT 184 |||||||| |||||||||||| ||||| | | ||||| |||| ||| | | |||||||| Sbjct 3669 TCTGTGATACCCTTAGATGTTTTGGGCTGTATGCGCGTTACATTGATATATTCAACGAGT 3728 Query 185 TCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGA 244 | || ||||||||| ||| | || ||||||| || || | || |||||||||| Sbjct 3729 TTATAGCCTTGGCCGACAGGCCCGGATAATCTTTGAAATTTCATTGTTGATGGGGATAGA 3788 Query 245 GCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCG 304 |||||||||| ||| |||||||| |||||| ||||||||| | ||||||||| |||| Sbjct 3789 TCATTGCAATTGTTGGTCTTCAACAAGGAATTCCTAGTAAG---GAGTCATCAGCTCGCG 3845 Query 305 TTGATTACGTCCCTGCCCTTTGTA 328 |||||||||||||| ||||||||| Sbjct 3846 TTGATTACGTCCCTTCCCTTTGTA 3869 >seq17 Length=27373735 Score = 183 bits (202), Expect = 6e-44 Identities = 200/263 (76%), Gaps = 2/263 (1%) Strand=Plus/Plus Query 67 GCCGGCTTCTTAGAGGGACTATCGGCTCA-AGCCGATGGAAGTTTGAGGCAATAACAGGT 125 ||| |||||||||||||| ||| || || | | |||||||||||||||| |||| Sbjct 6845769 GCCAGCTTCTTAGAGGGATTATGACCTTTTAGGTTAAGAAAGTTTGAGGCAATAATAGGT 6845828 Query 126 CTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTT 185 ||||||| || ||||||||| |||||| || | || ||||||||| | ||| ||||| Sbjct 6845829 CTGTGATTCCTTTAGATGTTGTGGGCCACATGTGCACTACACTGATGCATTCAATGAGTT 6845888 Query 186 CATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAG 245 || |||||| || | | ||||||||| | ||| | || || || ||||||| Sbjct 6845889 TATAGCCTTGGTCGACATGCTCAGGTAATCTT-TGAAATTTCATCATGATGAGGATAGAT 6845947 Query 246 CATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGT 305 |||||||||| ||| ||||||| ||||||| |||||||||| | ||||||| | ||| | Sbjct 6845948 CATTGCAATTGTTGGTCTTCAATGAGGAATTCCTAGTAAGCATGAGTCATCATCTCGCAT 6846007 Query 306 TGATTACGTCCCTGCCCTTTGTA 328 | | || ||| ||||||||||| Sbjct 6846008 TAACTATATCCTTGCCCTTTGTA 6846030 >seq16 Length=28979753 Score = 116 bits (128), Expect = 7e-24 Identities = 165/228 (72%), Gaps = 3/228 (1%) Strand=Plus/Minus Query 102 TGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCG 161 || ||||||||| |||||||| | ||||||||||||| || || | ||| ||||||| Sbjct 3712724 TGAAAGTTTGAGACAATAACATATTTGTGATGCCCTTAAATATTTTAGGCTGCACGCGTA 3712665 Query 162 CTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTA 221 || ||||| | | |||| ||| || | |||||||| ||| | | |||| || | | Sbjct 3712664 GTATACTGATATATTCAACCAGTCTATAATCTTGGCCGACAGGCTTAGCTAAT-TTTTGA 3712606 Query 222 AACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACG-AGGAATGCCTA 280 || | | ||| | ||||||| | || ||||| ||| |||| || | | ||| |||| Sbjct 3712605 AATTTCATGGTGAT-AGGATAGATCGTTACAATTGTTGGTCTTTAATGAAAAAATTCCTA 3712547 Query 281 GTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 | || | | |||||||| | |||||| ||||||||| | ||| ||| Sbjct 3712546 GCAACAGTGAGTCATCAGTTCACGTTGACTACGTCCCTACTCTTAGTA 3712499 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947180876032