Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10]
2,019 sequences; 582,117,524 total letters
Query= AAMG01002186.1
Length=328
Score E
Sequences producing significant alignments: (Bits) Value
seq1171 242 7e-62
seq17 183 6e-44
seq16 116 7e-24
>seq1171
Length=10373
Score = 242 bits (268), Expect = 7e-62
Identities = 214/264 (81%), Gaps = 6/264 (2%)
Strand=Plus/Plus
Query 67 GCCGGCTTCTTAGAGGGACTATCGGCTC--AAGCCGATGGAAGTTTGAGGCAATAACAGG 124
||| |||||||||||||||||| | || ||||| | | || |||||||||||||||||
Sbjct 3610 GCCAGCTTCTTAGAGGGACTATGGCCTTTTAAGCCAA-GAAAATTTGAGGCAATAACAGG 3668
Query 125 TCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGT 184
|||||||| |||||||||||| ||||| | | ||||| |||| ||| | | ||||||||
Sbjct 3669 TCTGTGATACCCTTAGATGTTTTGGGCTGTATGCGCGTTACATTGATATATTCAACGAGT 3728
Query 185 TCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGA 244
| || ||||||||| ||| | || ||||||| || || | || ||||||||||
Sbjct 3729 TTATAGCCTTGGCCGACAGGCCCGGATAATCTTTGAAATTTCATTGTTGATGGGGATAGA 3788
Query 245 GCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCG 304
|||||||||| ||| |||||||| |||||| ||||||||| | ||||||||| ||||
Sbjct 3789 TCATTGCAATTGTTGGTCTTCAACAAGGAATTCCTAGTAAG---GAGTCATCAGCTCGCG 3845
Query 305 TTGATTACGTCCCTGCCCTTTGTA 328
|||||||||||||| |||||||||
Sbjct 3846 TTGATTACGTCCCTTCCCTTTGTA 3869
>seq17
Length=27373735
Score = 183 bits (202), Expect = 6e-44
Identities = 200/263 (76%), Gaps = 2/263 (1%)
Strand=Plus/Plus
Query 67 GCCGGCTTCTTAGAGGGACTATCGGCTCA-AGCCGATGGAAGTTTGAGGCAATAACAGGT 125
||| |||||||||||||| ||| || || | | |||||||||||||||| ||||
Sbjct 6845769 GCCAGCTTCTTAGAGGGATTATGACCTTTTAGGTTAAGAAAGTTTGAGGCAATAATAGGT 6845828
Query 126 CTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTT 185
||||||| || ||||||||| |||||| || | || ||||||||| | ||| |||||
Sbjct 6845829 CTGTGATTCCTTTAGATGTTGTGGGCCACATGTGCACTACACTGATGCATTCAATGAGTT 6845888
Query 186 CATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAG 245
|| |||||| || | | ||||||||| | ||| | || || || |||||||
Sbjct 6845889 TATAGCCTTGGTCGACATGCTCAGGTAATCTT-TGAAATTTCATCATGATGAGGATAGAT 6845947
Query 246 CATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGT 305
|||||||||| ||| ||||||| ||||||| |||||||||| | ||||||| | ||| |
Sbjct 6845948 CATTGCAATTGTTGGTCTTCAATGAGGAATTCCTAGTAAGCATGAGTCATCATCTCGCAT 6846007
Query 306 TGATTACGTCCCTGCCCTTTGTA 328
| | || ||| |||||||||||
Sbjct 6846008 TAACTATATCCTTGCCCTTTGTA 6846030
>seq16
Length=28979753
Score = 116 bits (128), Expect = 7e-24
Identities = 165/228 (72%), Gaps = 3/228 (1%)
Strand=Plus/Minus
Query 102 TGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCG 161
|| ||||||||| |||||||| | ||||||||||||| || || | ||| |||||||
Sbjct 3712724 TGAAAGTTTGAGACAATAACATATTTGTGATGCCCTTAAATATTTTAGGCTGCACGCGTA 3712665
Query 162 CTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTA 221
|| ||||| | | |||| ||| || | |||||||| ||| | | |||| || | |
Sbjct 3712664 GTATACTGATATATTCAACCAGTCTATAATCTTGGCCGACAGGCTTAGCTAAT-TTTTGA 3712606
Query 222 AACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACG-AGGAATGCCTA 280
|| | | ||| | ||||||| | || ||||| ||| |||| || | | ||| ||||
Sbjct 3712605 AATTTCATGGTGAT-AGGATAGATCGTTACAATTGTTGGTCTTTAATGAAAAAATTCCTA 3712547
Query 281 GTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328
| || | | |||||||| | |||||| ||||||||| | ||| |||
Sbjct 3712546 GCAACAGTGAGTCATCAGTTCACGTTGACTACGTCCCTACTCTTAGTA 3712499
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 947180876032
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |