Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq6 102 1e-19 seq1 80.6 4e-13 >seq6 Length=27939960 Score = 102 bits (112), Expect = 1e-19 Identities = 98/123 (80%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| | | ||||||| | || || ||| || |||| Sbjct 14900281 GTACGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCACGCTTGGTTGAAAAGCCAGT 14900224 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | ||| |||||||| | ||||||||||| |||||||||||||||||||||||| |||| Sbjct 14900223 GGCGCAAAGCTACCGTGCGCTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCCA 14900164 Query 121 GAA 123 ||| Sbjct 14900163 GAA 14900161 >seq1 Length=34959721 Score = 80.6 bits (88), Expect = 4e-13 Identities = 94/123 (76%), Gaps = 3/123 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||| ||||||||||| || ||| | | ||||||| | || || ||| || |||| Sbjct 5045051 GTATGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCGCACTTGGTTGAAAAGCCAGT 5045108 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 || ||||||||||||| |||||||| || || ||||||||||||||||||| || | Sbjct 5045109 GC-GCGAAGCTACCATGAAATGGATTATAACTAAATGCCTCTAAGTCAGAATCCAGGCTA 5045167 Query 121 GAA 123 ||| Sbjct 5045168 GAA 5045170 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819183977216