Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10]
2,019 sequences; 582,117,524 total letters
Query= AAMG01002236.1
Length=287
Score E
Sequences producing significant alignments: (Bits) Value
seq6 102 1e-19
seq1 80.6 4e-13
>seq6
Length=27939960
Score = 102 bits (112), Expect = 1e-19
Identities = 98/123 (80%), Gaps = 2/123 (2%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||||||||||||||| || ||| | | ||||||| | || || ||| || ||||
Sbjct 14900281 GTACGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCACGCTTGGTTGAAAAGCCAGT 14900224
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
| ||| |||||||| | ||||||||||| |||||||||||||||||||||||| ||||
Sbjct 14900223 GGCGCAAAGCTACCGTGCGCTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCCA 14900164
Query 121 GAA 123
|||
Sbjct 14900163 GAA 14900161
>seq1
Length=34959721
Score = 80.6 bits (88), Expect = 4e-13
Identities = 94/123 (76%), Gaps = 3/123 (2%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||| ||||||||||| || ||| | | ||||||| | || || ||| || ||||
Sbjct 5045051 GTATGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCGCACTTGGTTGAAAAGCCAGT 5045108
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
|| ||||||||||||| |||||||| || || ||||||||||||||||||| || |
Sbjct 5045109 GC-GCGAAGCTACCATGAAATGGATTATAACTAAATGCCTCTAAGTCAGAATCCAGGCTA 5045167
Query 121 GAA 123
|||
Sbjct 5045168 GAA 5045170
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 819183977216
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |