Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq7 464 2e-128 seq1171 414 3e-113 seq485 349 1e-93 seq17 300 5e-79 seq5 156 1e-35 seq6 123 8e-26 seq221 116 1e-23 seq239 80.6 8e-13 >seq7 Length=27069033 Score = 464 bits (514), Expect = 2e-128 Identities = 374/443 (84%), Gaps = 8/443 (2%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||| ||||||| |||| | || |||||| |||| | |||||||||||||||||| Sbjct 13780291 GTACTCATTTCAATTACCAGACTCGAA-GAGCCCGGTATTATTATTTATTGTCACTACCT 13780349 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 |||||||| |||||||||||||||||||||||||||||||||||||||| |||| |||| Sbjct 13780350 CCCCGTGTTAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTAGTAGTCGTT 13780409 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||||||||||||||||||||||||||||||||| |||| |||| | || |||||| Sbjct 13780410 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTCACCCATCACCACTATGGTA 13780469 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 |||| |||||||||||||||||||||||||||||||||||||||||| | | ||| || Sbjct 13780470 GGCCTCTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGATGCGTTGCCTGCA 13780529 Query 241 C-AAGGCCATGCGATTCGTTAAGTTATTATGAATCACCA-AGGA--GCCCCGA-AGGGCG 295 | | |||| || ||| ||| |||||| |||||||| || || | | | || || Sbjct 13780530 CGATGGCCGTGAGATCCGTCGAGTTATCATGAATCATCATAGCAATGGGCTGAGCCCGCA 13780589 Query 296 TTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATTAG 354 | | ||||||||||||||| || |||||| ||||||| ||||| | | | ||||||| Sbjct 13780590 TCGACCTTTTATCTAATAAATGCATTCCTTCCAGAAGTCGAGGTTTGTTGAACGTATTAG 13780649 Query 355 CTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATT 414 |||||||||||| ||||||||||| |||| || ||| |||||| |||| |||||||||| Sbjct 13780650 CTCTAGAATTACTACGGTTATCCAAGTAG-CAGATACCATCAAACAAACTATAACTGATT 13780708 Query 415 TAATGAGCCATTCGCAGTTTCAC 437 ||||||||||||||||||||||| Sbjct 13780709 TAATGAGCCATTCGCAGTTTCAC 13780731 >seq1171 Length=10373 Score = 414 bits (458), Expect = 3e-113 Identities = 398/501 (79%), Gaps = 11/501 (2%) Strand=Plus/Minus Query 12 AATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCCCGTGTCGG 71 |||||| |||| | || || ||| ||| |||||||| |||||||||||| || | | Sbjct 2759 AATTACCAGACTCGAA-GAACCCGATATTGTTATTTATTATCACTACCTCCCTGTATTAG 2701 Query 72 GATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCC 131 | || |||||||||||| |||||||||||||||||||||||| ||| ||||||||||||| Sbjct 2700 GTTTTGGTAATTTGCGCACCTGCTGCCTTCCTTGGATGTGGTGGCCATTTCTCAGGCTCC 2641 Query 132 CTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGA-TACCATGGTAGGCCACTATC 190 | || | ||||| ||||||||| | ||| |||| | | ||||||||||||| ||||| Sbjct 2640 CCCTTCAGAATCAAACCCTAATCCTTCGTGACCCCATCACCACCATGGTAGGCCTCTATC 2581 Query 191 CTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC-TCAAGGCCAT 249 |||||||||||||||||| |||||||||||||||||| |||| ||| | | ||| || Sbjct 2580 CTACCATCGAAAGTTGATGGGGCAGAAATTTGAATGATGCATCACCGACAAGATGGCTAT 2521 Query 250 GCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGG----CGTTGGTTTTTT 305 ||||| | | |||||| |||||||| | | | | || | ||| | |||| Sbjct 2520 GCGATCCATGGAGTTATCATGAATCATTAGAGTAACGGGTAGAGCCCACGTCGACCTTTT 2461 Query 306 ATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATTAGCTCTAGAATT 364 ||||||||||| || |||||| |||||| ||||| ||| ||||| |||||| ||| Sbjct 2460 ATCTAATAAATGCATTCCTTCCAGAAGTCAAAATTTTTTGCACATATTAACTCTAG-ATT 2402 Query 365 ACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAGCCA 424 || ||||||||| |||| || ||| || ||| |||| |||||| ||||||||||||| Sbjct 2401 ACTACGGTTATCTGAGTAG-CAGATACCATTAAACAAACTATAACTAATTTAATGAGCCA 2343 Query 425 TTCGCAGTTTCACTGTATAGATT-GCTTATACTTAGACATGCATGGCTTAATCTTTGAGA 483 ||||||||||||| || | ||| | | ||||||| ||||| |||||||||| ||||||| Sbjct 2342 TTCGCAGTTTCACAGTTTGAATTAGTTCATACTTACACATGTATGGCTTAATTTTTGAGA 2283 Query 484 CAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||| Sbjct 2282 CAAGCATATGACTACTGGCAG 2262 >seq485 Length=25194 Score = 349 bits (386), Expect = 1e-93 Identities = 289/348 (83%), Gaps = 10/348 (3%) Strand=Plus/Minus Query 27 AAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGC 86 |||| ||| | || |||||||||||||||| ||| |||||| |||||||||||||||| Sbjct 9379 AAGACCCCGGGATTGTTATTTATTGTCACTACTTCCTCGTGTCAGGATTGGGTAATTTGC 9320 Query 87 GCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAA 146 |||||||||||||||||| ||||||||||||||||||| |||||||||||| |||| || Sbjct 9319 ACGCCTGCTGCCTTCCTTGAATGTGGTAGCCGTTTCTCAAGCTCCCTCTCCGAAATCAAA 9260 Query 147 CCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTG 206 ||||||||| || | |||||| ||||||||||||| |||| ||| ||||||||||| Sbjct 9259 CCCTAATTCTCCATCACCCGTCACCACCATGGTAGGCCTCTATTCTATTATCGAAAGTTG 9200 Query 207 ATAGGGCAGAAATTTGAATGAACCATCGCCGGCTC-AAGGCCATGCGATTCGTTAAGTTA 265 ||||||||||||||||||||| | |||||||| | | |||| |||||| ||| ||||| Sbjct 9199 ATAGGGCAGAAATTTGAATGATGCGTCGCCGGCACGATGGCCGTGCGATCCGTCGAGTTA 9140 Query 266 TTATGAATCACCAAGGAGC--CCCGAAG----GGCGTTGGTTTTTTATCTAATAAATACA 319 | |||||||| || |||| | | || |||| | ||||||||||||||| || Sbjct 9139 TCATGAATCATCA--GAGCAACGGGCAGAGCCCGCGTCGACCTTTTATCTAATAAATGCA 9082 Query 320 CCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATTAGCTCTAGAATTAC 366 ||||||| ||||||||||||| | ||| ||||||||||||||||||| Sbjct 9081 TCCCTTCCAGAAGTCGGGGTTTGTTGCACGTATTAGCTCTAGAATTAC 9034 >seq17 Length=27373735 Score = 300 bits (332), Expect = 5e-79 Identities = 372/508 (73%), Gaps = 46/508 (9%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 |||||||||||| ||| | || |||| ||||| |||| | |||||||||||||||||| Sbjct 6844912 GTACTCATTCCAGTTATCAAACTCAAA-GAGCCTAGTATTATTATTTATTGTCACTACCT 6844854 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 |||||||| |||||||||| ||||| | || ||||||||||| | | |||||| | || Sbjct 6844853 TCCCGTGTCTAGATTGGGTAAATTGCGTGTCTACTGCCTTCCTTAGCTATGGTAGTCATT 6844794 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||| ||| |||| |||||| |||| |||||| || | |||| | || |||| | Sbjct 6844793 TCTCAAGCT--CTCTTTGGAATCAAACCGTAATTCTCCATCACCCATCACCACTATGGAA 6844736 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 |||| ||||||||||||| ||||||||| ||| | |||||||||||| | || || || Sbjct 6844735 GGCCTCTATCCTACCATCAAAAGTTGATGGGGTAAAAATTTGAATGATACGTCACCAGCA 6844676 Query 241 C-AAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGG 299 | | |||| ||| || ||| |||||| |||||||| ||| |||| || | Sbjct 6844675 CGATGGCCTTGCAATCCGTCGAGTTATCATGAATCATCAA--AGCC------TGCATCAA 6844624 Query 300 TTTTTTATCTAATAAATACACCCCTTC-CGAAGTCGGGGTTTTTAGCATGTATTAGCTCT 358 |||||||| |||||| || |||||| ||||| ||| ||||| ||| ||||||||||| Sbjct 6844623 ACTTTTATCTGATAAATGCATCCCTTCTAGAAGTTGGGATTTTTTGCACGTATTAGCTCT 6844564 Query 359 AGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAAT 418 |||||||| | | |||| |||| | |||| | Sbjct 6844563 AGAATTACTATGATTATTTGAGTAGCA------------------GATACC--------- 6844531 Query 419 GAGCCATTCGCAGTTTCACTGTATAGATT-GCTTATACTTAGACATGCATGGCTTAATCT 477 |||||| || |||||| | | ||| | | ||||||| |||||||||||||||||| Sbjct 6844530 ---CCATTCACAATTTCACAATCTGAATTAGTTCATACTTACACATGCATGGCTTAATCT 6844474 Query 478 TT--GAGACAAGCATATGACTACTGGCA 503 || |||||||||||||||||||| ||| Sbjct 6844473 TTGAGAGACAAGCATATGACTACTAGCA 6844446 >seq5 Length=28438989 Score = 156 bits (172), Expect = 1e-35 Identities = 113/131 (86%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 55 CTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTA 114 |||||||| |||||| ||||||| |||||||||||||||||||||| |||||||||||| Sbjct 24316940 CTACCTCCTCGTGTCAGGATTGGATAATTTGCGCGCCTGCTGCCTTTTTTGGATGTGGTA 24316881 Query 115 GCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACC 174 ||| |||||||| |||||||| ||||| |||||||||||| |||| |||| | ||| Sbjct 24316880 GCCATTTCTCAGACTCCCTCTATGGAATTGAACCCTAATTCTCCGTCACCCATCACCACC 24316821 Query 175 ATGGTAGGCCA 185 ||| ||||||| Sbjct 24316820 ATGATAGGCCA 24316810 >seq6 Length=27939960 Score = 123 bits (136), Expect = 8e-26 Identities = 91/105 (87%), Gaps = 1/105 (1%) Strand=Plus/Plus Query 386 AGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGA 445 || ||| |||||| |||| |||||||||||||||||||||||| |||||||| | | | Sbjct 2852505 AGATACCATCAAACAAACTATAACTGATTTAATGAGCCATTCGTAGTTTCACAATCTGAA 2852564 Query 446 TT-GCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCA 489 || | | ||||||| |||||||||||||||||||||||||||||| Sbjct 2852565 TTAGTTCATACTTACACATGCATGGCTTAATCTTTGAGACAAGCA 2852609 >seq221 Length=79079 Score = 116 bits (128), Expect = 1e-23 Identities = 102/125 (82%), Gaps = 3/125 (2%) Strand=Plus/Plus Query 377 CATGTAGTAAGGTA--CTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTT 434 ||| |||||| ||| |||| |||||||| ||| ||||||||||||| |||||||||||| Sbjct 48504 CATATAGTAACGTATACTATAAAATAAACTATAGCTGATTTAATGAGTCATTCGCAGTTT 48563 Query 435 CACTGTATAGATT-GCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATG 493 || ||| | ||| | ||||| ||| ||| ||| ||| ||||||||||||||||||| Sbjct 48564 CAATGTCTGAATTAGTTTATATTTACACACATGTGGATTAGTCTTTGAGACAAGCATATG 48623 Query 494 ACTAC 498 || || Sbjct 48624 ACAAC 48628 >seq239 Length=74847 Score = 80.6 bits (88), Expect = 8e-13 Identities = 60/69 (87%), Gaps = 1/69 (1%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| |||| | || ||||| |||| |||||||||||||||||| Sbjct 16068 GTACTCATTCCAATTACCAGACTCGAA-GAGCCTAGTATTGTTATTTATTGTCACTACCT 16126 Query 61 CCCCGTGTC 69 ||||||||| Sbjct 16127 CCCCGTGTC 16135 Score = 80.6 bits (88), Expect = 8e-13 Identities = 60/69 (87%), Gaps = 1/69 (1%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| |||| | || ||||| |||| |||||||||||||||||| Sbjct 60991 GTACTCATTCCAATTACCAGACTCGAA-GAGCCTGGTATTGTTATTTATTGTCACTACCT 61049 Query 61 CCCCGTGTC 69 ||||||||| Sbjct 61050 CCCCGTGTC 61058 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510369505024