Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq17 165 6e-36 >seq17 Length=27373735 Score = 165 bits (182), Expect = 6e-36 Identities = 575/886 (65%), Gaps = 20/886 (2%) Strand=Plus/Minus Query 61053 TCGTTTC-GTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGG 61111 ||||||| |||| |||||| || | ||| | || ||| |||||||| || || | Sbjct 24448562 TCGTTTCTGTAT-GTTCCCAATTCAATATCCACAAATATGGGAGATGTACAAGAAAGCCG 24448504 Query 61112 AAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAGC 61171 | || ||||| ||||| | |||||||||||| | || |||| | | ||||| Sbjct 24448503 AGGCATCCTTTTGGACTGCCGAGGAGGTCGATCTCTCTCAAGATCTCCGCCATTGGGAAA 24448444 Query 61172 GTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGG 61231 || | || ||| | || || || | ||||| | || |||||||| || || | Sbjct 24448443 CCCTAACTTCCGATGAGAAGCACTTTATCACCCATGTTCTTGCCTTCTTTGCTGCCTCTG 24448384 Query 61232 ACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGG 61291 | ||||| || ||| ||| | | ||||| | |||| || || || | |||| Sbjct 24448383 ATGGTATAGTTCTTGAAAATCTCGCTGGCCGTTTTATGAAGGAAGTTCAGGTAGCTGAGG 24448324 Query 61292 CGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTG 61351 | ||| ||| || || ||||| || || || |||||| | ||||| |||||||||||| Sbjct 24448323 CTCGTGCTTTTTATGGATTCCAAATCGCTATTGAGAATATTCACTCTGAGATGTACAGTC 24448264 Query 61352 TTCTCATCGATACGTACATCAGGGA--GCGGGCGGAACGTGAA-CGATTGTTCAATGCCA 61408 || | | || || || |||| || | ||| ||| || ||||| |||||| Sbjct 24448263 TTTTGTTGGAGACTTATATCAAAGACTCCAATGAGAA---GAATCGTTTGTTTCATGCCA 24448207 Query 61409 TCGAGACGATACCGGCGGTGAAGCGGAAA--GCGGATTGGGCCTTCAATTGGATCACCAG 61466 |||| || | || ||| || ||| || || ||||| ||| ||||| | Sbjct 24448206 TCGATACCGTTCC--TTGTGTGGCTAAAAAGGCTGAGTGGGCTCTCAGGTGGATTGATGG 24448149 Query 61467 TACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTT 61526 | ||| || || | ||| | || | || ||||| || ||||| ||||||| Sbjct 24448148 T---TCGGAGACTTTCGCTGAGAGGCTGATCGCTTTTGCCTGTGTGGAGGGGATATTTTT 24448092 Query 61527 CAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGAC 61586 | |||| || |||||| |||||| | ||||| || ||||| ||||| || | || Sbjct 24448091 CTCTGGAAGCTTCTGCGCAATATTTTGGCTAAAGAAGCGGGGACTCATGCCTGGATTAAC 24448032 Query 61587 CTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTGCT 61646 || || |||||||| || || || || ||| |||| || ||||| || |||||| Sbjct 24448031 ATTTTCAAACGAGTTGATCTCTCGAGATGAAGGCTTGCACTGCGATTTCGCGTGTTTGCT 24447972 Query 61647 ATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGA 61706 || | || | || ||| | |||||||||||| | ||| || || || Sbjct 24447971 ATACGGACTGT---TGAGGAAGAAGTTGAGCGAGGAGCGTGTGAAGGGGATAGTGCGAGA 24447915 Query 61707 GGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCAT 61766 || || ||| || ||||||| || ||||| | ||| | | | || || Sbjct 24447914 CGCAGTGGATATTGAGAGGGAATTTGTGTGCGACGCGCTTCCCTGTGCGTTGGTAGGGAT 24447855 Query 61767 GAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGG-TCGATT 61825 ||| | | ||| ||| ||||| ||||| || || || || | |||||| | | | Sbjct 24447854 GAACGGGGAACTGATGAGCCAGTACATTGAGTTCGTGGCTGATAGGTTGTTGGATGCACT 24447795 Query 61826 TGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATTTCGC 61885 ||| | | | ||| || ||| | ||||| ||||||| ||||| |||| |||| Sbjct 24447794 TGGATGCG-GGAAGATATACAATGTGGCTAACCCTTTTGATTGGATGGAGTTGATCTCGC 24447736 Query 61886 TGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTATCA 61931 || | || ||||||||||| || ||||| | || || || || || Sbjct 24447735 TGCAAGGGAAGACGAATTTCTTTGAGAAGAGAGTTGGAGAGTACCA 24447690 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397558217218160