Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_031903.1 Length=172345 Score E Sequences producing significant alignments: (Bits) Value seq1998 206 3e-48 seq14 159 4e-34 seq11 118 1e-21 seq287 111 2e-19 seq7 98.7 1e-15 seq560 95.1 1e-14 seq10 82.4 8e-11 >seq1998 Length=1172 Score = 206 bits (228), Expect = 3e-48 Identities = 292/408 (72%), Gaps = 2/408 (0%) Strand=Plus/Minus Query 159830 AACCGCCTCTATGTCGGTTGGTTCGGCGTCCTGATGATCCCAACTCTGTTGGCAGCAACT 159889 ||||| || || | || ||||| || || |||||||||| ||| | ||| | |||||| Sbjct 408 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACTTTATTGACCGCAACT 349 Query 159890 ATCTGC-TTCATCGTCGCCTTCATCGCTGCTCCCCCTGTGGACATCGATGGCATCCGTGA 159948 |||| || || |||| ||||| ||||| || || || || || ||||| || ||||| Sbjct 348 -TCTGTATTTATTATCGCTTTCATTGCTGCCCCTCCGGTAGATATTGATGGTATTCGTGA 290 Query 159949 ACCCGTCGCTGGTTCACTCATGTACGGTAACAACATCATCTCTGGTGCAGTTGTTCCCTC 160008 ||| || |||| || || | || || ||||| || || |||||||| || |||| | Sbjct 289 ACCTGTTTCTGGATCTCTACTTTATGGAAACAATATTATTTCTGGTGCCATTATTCCTAC 230 Query 160009 TTCCAACGCAATTGGTCTTCACTTCTATCCCATTTGGGAAGCCGCATCGCTCGACGAGTG 160068 ||| || || ||| | || || || || || |||||||| ||||| | || || || Sbjct 229 TTCTGCGGCTATAGGTTTGCATTTTTACCCAATATGGGAAGCGGCATCTGTTGATGAATG 170 Query 160069 GCTCTATAACGGTGGTCCTTTCCAACTCGTAGTCTTCCACTTCCTGATCGGCATCTATGC 160128 | | || || || ||||||| | || | || | |||||| | | || | | Sbjct 169 GTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTG 110 Query 160129 CTATATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCCTGGATCTGTGT 160188 || |||||||||||||||||||| || |||||| |||||||| || ||||| ||| Sbjct 109 TTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGT 50 Query 160189 TGCATACTCTGCTCCAGTCGCTGCTGCTTCTGCTGTATTCCTCGTCTA 160236 |||||| || ||||| || || |||||| ||||||| ||| | |||| Sbjct 49 TGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTA 2 >seq14 Length=24855542 Score = 159 bits (176), Expect = 4e-34 Identities = 188/252 (75%), Gaps = 2/252 (1%) Strand=Plus/Minus Query 162184 ACGCAAGAGGAGGAGACTTACTCGATGGTTACTGCGAACCGTTTCTGGTCACAGATCTTC 162243 || |||| || || ||||| || ||||| || || ||||| || | || || ||||| Sbjct 952205 ACTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTAGTTTCAAATCTTT 952146 Query 162244 GGTATTGCTTTTAGTAATAAGCGTTGGTTGCATTTCTTTATGCTCTTCGTTCCCGTCATG 162303 || |||||||| |||| | |||||| |||||||||||| | || || || || | | Sbjct 952145 GGGGTTGCTTTTTCCGATAAACATTGGTTACATTTCTTTATGTTATTTGTACCAGTAACG 952086 Query 162304 GGTCTCTGGACAAGTTCTATCGGTATTATT-GGACTCGCTCTTAATCTTCGTGCTTACGA 162362 ||| | |||| || || |||| |||| | || || |||| ||| | ||||| || || Sbjct 952085 GGTTTATGGATGAGCGCTCTCGG-ATTAGTCGGTCTGACTCTAAATTTACGTGCCTATGA 952027 Query 162363 CTTTGTATCTCAGGAGATTCGTGCAGCGGAGGATCCTGAATTTGAAACCTTCTACACCAA 162422 ||| || |||||| | || |||||||| || |||||||||||||| || ||||||| || Sbjct 952026 CTTCGTTTCTCAGAAAATCCGTGCAGCAGAAGATCCTGAATTTGAGACTTTCTACATTAA 951967 Query 162423 GAATATCCTCTT 162434 ||||| ||||| Sbjct 951966 AAATATTCTCTT 951955 >seq11 Length=27369018 Score = 118 bits (130), Expect = 1e-21 Identities = 143/195 (73%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 160960 GATGATCAATATGTCCTTGACGCTGCTGATGAAGCAGGTGTTGACGGACCCTACTCCTGT 161019 |||||| || |||| || || ||||| | ||||| ||||| ||||||||| || Sbjct 27029547 GATGATACGTACATCCTAGATGCGGCTGAGAATGCAGGAGTTGAGCTACCCTACTCTTGC 27029606 Query 161020 CGTGCTGGTGCTTGCTCTACTTGTGCTGGTAAGATTGAGAGTGGTACTGTAGATCAATCT 161079 | ||||| |||||||||||||||||||| ||||| | | || | || ||||||||| Sbjct 27029607 AGGGCTGGAGCTTGCTCTACTTGTGCTGGGAAGATGGTGTCAGGCTCAGTTGATCAATCT 27029666 Query 161080 GATCAATCTTTCCTGGATGATGATCAACTTGAATCAGGATTTGTCCTGACCTGCGTTGCT 161139 ||| || ||||||||||| ||||| | || || | | | ||||| || ||| || Sbjct 27029667 GATGGTTCCTTCCTGGATGAGAATCAAATGGAGGGGGGTTATCTGCTGACTTGTGTTTCT 27029726 Query 161140 TATCCCACTTCTGAT 161154 || || ||||| ||| Sbjct 27029727 TACCCAACTTCAGAT 27029741 >seq287 Length=58314 Score = 111 bits (122), Expect = 2e-19 Identities = 157/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 160130 TATATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCCTGGATCTGTGTT 160189 || |||||||||||||||||||| || || || ||||| |||| ||||| | |||| Sbjct 44654 TACATGGGTCGTGAGTGGGAACTTAATTTTCGACTAAGTATGTGTCCTTGGATTTTTGTT 44595 Query 160190 GCATACTCTGCTCCAGTCGCTGCTGCTTCTGCTGTATTCCTCGTCTACCCCTTCGGTCAG 160249 ||||| || |||| || || ||||| | || ||| | |||| || | ||| || Sbjct 44594 GCATATTCAGCTCATGTTGCAACTGCTATTATGGTTTTCTTGATCTATCCAATTGGTTAG 44535 Query 160250 GGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGCTTGTA 160309 || || || || ||||| || || | || | || ||| |||| ||| ||||| Sbjct 44534 GGAAGCTTTTCTAATAGCATGCCCCTAGGAACCTTTAATATTTTCAACTTTATAATTGTA 44475 Query 160310 TTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCACAT 160350 ||| | || || ||||| ||||||||||| || || ||||| Sbjct 44474 TTCTAGGCTGAGCACAACATCCTTATGCACCCATTTCACAT 44434 >seq7 Length=27069033 Score = 98.7 bits (108), Expect = 1e-15 Identities = 135/186 (73%), Gaps = 2/186 (1%) Strand=Plus/Plus Query 160960 GATGATCAATATGTCCTTGACGCTGCTGATGAAGCAGGTGTTGACGGACCCTACTCCTGT 161019 |||||| ||| |||| |||||| ||| ||||| |||||||| || ||||| || Sbjct 1887712 GATGATGTCTATATCCTCGACGCTTTTGAAGAAGCTGGTGTTGATCTTCCATACTCATGC 1887771 Query 161020 CGTGCTGGTGCTTGCTCTACTTGTGCTGGTAAGATTGAGAGTGGTACTGTAGATCAATCT 161079 | |||||| |||||||| |||||||||| || |||| || | ||||||||||| Sbjct 1887772 AGGGCTGGTTCTTGCTCTTCTTGTGCTGGGAAAATTGTAGCAGGAGCCATAGATCAATCT 1887831 Query 161080 GAT-CAATCTTTCCTGGATGATGATCAACTTGAATCAGGATTTGTCCTGACCTGCGTTGC 161138 ||| || |||| || || ||||| || | ||| || | || || || || ||||| Sbjct 1887832 GATGGAAGCTTT-CTTGACGATGAACAGGTAGAAGAGGGTTGGGTTCTTACTTGTGTTGC 1887890 Query 161139 TTATCC 161144 |||||| Sbjct 1887891 TTATCC 1887896 >seq560 Length=20368 Score = 95.1 bits (104), Expect = 1e-14 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 160201 TCCAGTCGCTGCTGCTTCTGCTGTATTCCTCGTCTACCCCTTCGGTCAGGGTTCTTTCTC 160260 ||| || || |||||| ||||| | ||| | |||| || | |||||||| || || Sbjct 20252 TCCTGTTGCAGCTGCTACTGCTCTTTTCTTGATCTATCCAATTGGTCAGGGAAGCTTTTC 20311 Query 160261 CGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGCTTGTATTCCAAGC 160317 |||| ||||||||| || |||||||||||||| |||| |||| |||||||||| || Sbjct 20312 TGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGC 20368 >seq10 Length=26335333 Score = 82.4 bits (90), Expect = 8e-11 Identities = 135/195 (69%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 160960 GATGATCAATATGTCCTTGACGCTGCTGATGAAGCAGGTGTTGACGGACCCTACTCCTGT 161019 |||||| || |||| ||||| || || | ||||| || || || ||||| || Sbjct 7997433 GATGATACTTACATCCTCGACGCAGCAGAAAATGCAGGAGTAGAGCTGCCATACTCATGC 7997374 Query 161020 CGTGCTGGTGCTTGCTCTACTTGTGCTGGTAAGATTGAGAGTGGTACTGTAGATCAATCT 161079 | ||||| || |||||||||||||| || || | | | ||| |||| || ||||| Sbjct 7997373 AGAGCTGGGGCCTGCTCTACTTGTGCCGGGCAGCTGGTTACTGGATCTGTGGACCAATCA 7997314 Query 161080 GATCAATCTTTCCTGGATGATGATCAACTTGAATCAGGATTTGTCCTGACCTGCGTTGCT 161139 ||| || || || | || || ||| | ||| || | ||| || |||||||| || Sbjct 7997313 GATGGGTCATTTCTCAACGAGGAGCAAATGGAAAAGGGTTATGTGCTTACCTGCGTCTCT 7997254 Query 161140 TATCCCACTTCTGAT 161154 ||||| ||||| ||| Sbjct 7997253 TATCCAACTTCAGAT 7997239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 551362084648200