Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_031906.1 Length=198190 Score E Sequences producing significant alignments: (Bits) Value seq1998 203 4e-47 seq14 150 2e-31 seq287 96.9 4e-15 seq151 91.5 2e-13 >seq1998 Length=1172 Score = 203 bits (224), Expect = 4e-47 Identities = 314/440 (71%), Gaps = 10/440 (2%) Strand=Plus/Minus Query 188851 TTCTGCGAATGGGTCACCTCTACTAACAACCGTCTGTATGTCGGTTGGTTCGGTGTCCTG 188910 ||||| | ||| | ||| ||| | |||||||| || | || ||||| ||||| || Sbjct 435 TTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 376 Query 188911 ATGATCCCTACGCTTCTCGCTGCAACCATCTGC-TTCATCGTCGCCTTTGTCGCTGCACC 188969 ||||||||||| | | | ||||| |||| || || |||| || | ||||| || Sbjct 375 ATGATCCCTACTTTATTGACCGCAACT-TCTGTATTTATTATCGCTTTCATTGCTGCCCC 317 Query 188970 CCCTGTAGACATTGATGGCATCCGCGAACCCGTCGCTGGTTCACTCATGTATGGAAACAA 189029 || ||||| |||||||| || || ||||| || |||| || || | ||||||||||| Sbjct 316 TCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAA 257 Query 189030 CATCATCTCTGGTGCTGTTGTCCCTTCATCCAACGCAATTGGTCTTCACTTCTACCCCAT 189089 || || |||||||| || | ||| | || || || ||| | || || ||||| || Sbjct 256 TATTATTTCTGGTGCCATTATTCCTACTTCTGCGGCTATAGGTTTGCATTTTTACCCAAT 197 Query 189090 CTGGGAAGCCGCCTCACTCGATGAGTGGCTCTACAACGGTGGTCCTTTCCAACTGGTAGT 189149 |||||||| || || | ||||| ||| | ||||| || ||||||| | || | || Sbjct 196 ATGGGAAGCGGCATCTGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGT 137 Query 189150 CTTCCACTTCCTCATCGGCATCTACGC---CTACATGGGTCGTGAGTGGGAACTCTCTTA 189206 | |||||| | | || | || || ||||||||||||||||||||||| || Sbjct 136 TCTACACTTCTTACTTGG--TGTA-GCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTT 80 Query 189207 CCGTCTCGGTATGCGTCCTTGGATCTGC-ATTGCTTACTCTGCACCTGTTGCAGCAGCAT 189265 |||||| |||||||| |||||||| ||| |||| || || || ||||||||||| || Sbjct 79 CCGTCTGGGTATGCGCCCTTGGAT-TGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTA 21 Query 189266 CCGCAGTCTTTCTGGTCTAT 189285 | || || || || ||||| Sbjct 20 CTGCTGTTTTCTTGATCTAT 1 >seq14 Length=24855542 Score = 150 bits (166), Expect = 2e-31 Identities = 186/252 (74%), Gaps = 2/252 (1%) Strand=Plus/Minus Query 190656 ACACAAGAGGAAGAGACCTATTCGATGGTCACTGCCAACCGTTTCTGGTCTCAAATCTTT 190715 || |||| ||||| || ||||| |||||||| || ||||| || | || |||||||||| Sbjct 952205 ACTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTAGTTTCAAATCTTT 952146 Query 190716 GGTGTTGCGTTCAGTAATAAGAGGTGGTTGCATTTCTTTATGCTCTTTGTTCCTGTTATG 190775 || ||||| || |||| ||||| |||||||||||| | ||||| || || | | Sbjct 952145 GGGGTTGCTTTTTCCGATAAACATTGGTTACATTTCTTTATGTTATTTGTACCAGTAACG 952086 Query 190776 GGTCTGTGGACTTCTTCCATCGGTATTA-TTGGTCTTGCTCTCAACCTTCGTGCTTATGA 190834 ||| | |||| | |||| |||| | ||||| |||| || | ||||| ||||| Sbjct 952085 GGTTTATGGATGAGCGCTCTCGG-ATTAGTCGGTCTGACTCTAAATTTACGTGCCTATGA 952027 Query 190835 CTTTGTATCCCAAGAGATCAGAGCAGCAGAAGATCCAGAGTTCGAGACTTTTTACACAAA 190894 ||| || || || | ||| | |||||||||||||| || || |||||||| |||| || Sbjct 952026 CTTCGTTTCTCAGAAAATCCGTGCAGCAGAAGATCCTGAATTTGAGACTTTCTACATTAA 951967 Query 190895 AAATATACTTTT 190906 |||||| || || Sbjct 951966 AAATATTCTCTT 951955 >seq287 Length=58314 Score = 96.9 bits (106), Expect = 4e-15 Identities = 154/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 189178 TACATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCTTGGATCTGCATT 189237 ||||||||||||||||||||||| || || || ||||| |||||||||| | || Sbjct 44654 TACATGGGTCGTGAGTGGGAACTTAATTTTCGACTAAGTATGTGTCCTTGGATTTTTGTT 44595 Query 189238 GCTTACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTTCTGGTCTATCCTTTTGGTCAA 189297 || || || || | ||||||| | || || || || ||||||| ||||| | Sbjct 44594 GCATATTCAGCTCATGTTGCAACTGCTATTATGGTTTTCTTGATCTATCCAATTGGTTAG 44535 Query 189298 GGTTCTTTCTCTGACGCAATGCCCTTGGGTATCAGTGGAACCTTCAACTACATGCTTGTC 189357 || || ||| | |||||| | || | | | | ||||||| || |||| Sbjct 44534 GGAAGCTTTTCTAATAGCATGCCCCTAGGAACCTTTAATATTTTCAACTTTATAATTGTA 44475 Query 189358 TTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCACAT 189398 ||| | || |||||||||||||| |||||||| || ||||| Sbjct 44474 TTCTAGGCTGAGCACAACATCCTTATGCACCCATTTCACAT 44434 Score = 95.1 bits (104), Expect = 2e-14 Identities = 316/486 (65%), Gaps = 18/486 (4%) Strand=Plus/Minus Query 189178 TACATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCTTGGATCTGCATT 189237 ||||| ||| |||||||| |||| || | || ||||| |||||||||| | || Sbjct 18106 TACATAGGTGGTGAGTGGCAACTTAATTTTTGACTGAGTATGTGTCCTTGGATTTTTGTT 18047 Query 189238 GCTTACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTTCTGGTCTATCCTTTTGGTCAA 189297 || || || || | ||||||| | | || || || ||||||| |||| | Sbjct 18046 GCATATTCAGCTCGTGTTGCAACTACTATTATTGTTTTCTTGATCTATCCAATTGGCTAG 17987 Query 189298 GGTTCTTTCTCTGACGCAATGCCCTTGGGTATCAGTGGAACCTTCAACTACATGCTTGTC 189357 || | ||| ||| | ||||| | || | | || | ||||||| | | |||| Sbjct 17986 GGATGTTTTTCTTATAGTATGCCTCTAGGAAGCTTTGATATTTTCAACTTTAGGATTGTA 17927 Query 189358 TTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCACATGCTGGGAGTCG---CAGGT 189414 ||| | | |||||||||||||| || ||||| || ||||| || || || Sbjct 17926 TTCTAGACTGAGCACAACATCCTTATACACCCATTTCACATATCAGGCGTAATTACACCA 17867 Query 189415 GTCTTCGGTGGTTCACTGTTCTCCGCAATGCATGGTTCACTCGTTACCTCTTCACTGGTT 189474 |||| | |||| || | |||||| |||| | | |||||| || | Sbjct 17866 A-CTTC--TTATTCAGTGCT-------ATGCATCGTTCCTTGATAACCTCTAGTTTGATA 17817 Query 189475 CGTGAAACCACTGAAACCGAGTCCCAGAACTATGGTTACAAGTTTGGACAA-GAAGAAGA 189533 |||||||| ||| | ||| || | |||||| || | || || ||| | Sbjct 17816 AAGGAAACCACATAAAATAAATCCGCTAATGAAAGTTACATATTCAGTTAAAGAGGAAAA 17757 Query 189534 AACGTACAACATCGTTGCTGCTCATGGATATTTCGGTCGTCTTATCTTCCAATATGCATC 189593 ||| || || ||| | ||||||||||| ||||| || || | | |||||||||| || Sbjct 17756 AACTTATAATATCATAGCTGCTCATGGTTATTTTGGCCGATTGAACTTCCAATAT--AT- 17700 Query 189594 GTTCAACAACTCCCGTTCACTTCACTTCTTCCTCGCTGCCTGGCCAGTCGTGGGTATCTG 189653 ||||||||||| | ||| | || || ||||| | ||| ||||| | || ||||| | Sbjct 17699 -TTCAACAACTCTCATTCTTTACATTTTTTCCTAGTTGCTTGGCCTATAGTAGGTATTTA 17641 Query 189654 GTTTAC 189659 |||||| Sbjct 17640 GTTTAC 17635 >seq151 Length=113734 Score = 91.5 bits (100), Expect = 2e-13 Identities = 348/541 (64%), Gaps = 19/541 (4%) Strand=Plus/Minus Query 189178 TACATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCTTGGATCTGCATT 189237 ||||| ||| ||||||| |||| || | | ||||| |||||||||| | || Sbjct 4858 TACATAGGTGATGAGTGGCAACTTAATTTTTGACCGAGTATGTGTCCTTGGATTTTTGTT 4799 Query 189238 GCTTACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTTCTGGTCTATCCTTTTGGTCAA 189297 || || || || | ||||||| | ||| || || || ||||||| ||||| | Sbjct 4798 GCATATTCAGCTCGTGTTGCAACTGCAATTATTGTTTTCTTGATCTATCCAATTGGTTAG 4739 Query 189298 GGTTCTTTCTCTGACGCAATGCCCTTGGGTATCAGTGGAACCTTCAACTACATGCTTGTC 189357 || ||| ||| | ||||| | || | ||| | ||||||| ||| |||| Sbjct 4738 GGAAGTTTTTCTTATAGTATGCCTCTAGGAAGTTTTGGTATTTTCAACTTTATGATTGTA 4679 Query 189358 TTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCACATGCTGGGAGTCG---CAGGT 189414 ||| | | ||||||||||||| | ||||| || ||||| | || || || Sbjct 4678 TTCTAGACTAAGCACAACATCCTTGTACACCCATTTCACATATTAGGCGTAATTACAACA 4619 Query 189415 GTCTTCGGTGGTTCACTGTTCTCCGCAATGCATGGTTCACTCGTTACCTCTTCACTGGTT 189474 |||| | |||| || | |||||| |||| | | |||||| || | Sbjct 4618 A-CTTC--TTATTCAATGCT-------ATGCATCGTTCCTTGATAACCTCTAGTTTGATA 4569 Query 189475 CGTGAAACCACTGAAACCGAGTCCCAGAACTATGGTTACAAGTTTGGACAAGAAG--AAG 189532 |||||||| ||| | ||| || | |||||| || | || || || Sbjct 4568 AAGGAAACCACATAAAATAAATCCGCTAATGAAAGTTACAGATTCAGTTAAAGAGGAAAA 4509 Query 189533 AAACGTACAACATCGTTGCTGCTCATGGATATTTCGGTCGTCTTATCTTCCAATATGCAT 189592 |||| || || ||| | ||||||||||| ||||| || || | | |||||||| | || Sbjct 4508 AAACTTATAATATCATAGCTGCTCATGGTTATTTTGGCCGATTGAACTTCCAATGT--AT 4451 Query 189593 CGTTCAACAACTCCCGTTCACTTCACTTCTTCCTCGCTGCCTGGCCAGTCGTGGGTATCT 189652 ||||||||||| | ||| | || || ||||| | ||| ||||| | || ||||| | Sbjct 4450 --TTCAACAACTCTCATTCTTTACATTTTTTCCTAGTTGCTTGGCCTATAGTAGGTATTT 4393 Query 189653 GGTTTACCGCCCTCGGCGTCAGCACCATGGCATTCAACCTCAATGGGTTCAACTTCAATC 189712 |||||| ||| | |||| ||| | || ||||| |||| || || ||||| | Sbjct 4392 AGTTTACTATTTTCGATATTAGCATTATGTCTTTTAACCTAAATGATTTTAATTTCAACC 4333 Query 189713 A 189713 | Sbjct 4332 A 4332 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634063997406000