Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_031922.1 Length=174830 Score E Sequences producing significant alignments: (Bits) Value seq1998 275 7e-69 seq287 165 9e-36 seq14 161 1e-34 seq151 156 5e-33 seq560 96.9 4e-15 >seq1998 Length=1172 Score = 275 bits (304), Expect = 7e-69 Identities = 310/410 (76%), Gaps = 4/410 (1%) Strand=Plus/Minus Query 160599 AATCGTCTTTACGTCGGTTGGTTCGGTGTGCTGATGATCCCAACTCTGTTGGCAGCAACC 160658 || ||||||||| | || ||||| ||||| |||||||||| ||| | ||| | ||||| Sbjct 408 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACTTTATTGACCGCAACT 349 Query 160659 GTCTGC-TTTATTACTGCGTTCGTTGCTGCTCCCCCCGTGGACATCGACGGTATCCGTGA 160717 |||| ||||||| || ||| ||||||| || || || || || || ||||| ||||| Sbjct 348 -TCTGTATTTATTATCGCTTTCATTGCTGCCCCTCCGGTAGATATTGATGGTATTCGTGA 290 Query 160718 ACCCGTTGCTGGTTCACTGATGTATGGAAACAACATCATCTCTGGTGCAGTTGTTCCTTC 160777 ||| ||| |||| || || | ||||||||||| || || |||||||| || ||||| | Sbjct 289 ACCTGTTTCTGGATCTCTACTTTATGGAAACAATATTATTTCTGGTGCCATTATTCCTAC 230 Query 160778 TTCCAACGCAATTGGTCTTCACTTCTACCCCATTTGGGAAGCTGCATCTCTTGATGAATG 160837 ||| || || ||| | || || ||||| || |||||||| |||||| |||||||||| Sbjct 229 TTCTGCGGCTATAGGTTTGCATTTTTACCCAATATGGGAAGCGGCATCTGTTGATGAATG 170 Query 160838 GCTCTACAATGGTGGTCCTTACCAACTGGTCGTATTTCACTTCCTGATCGGCATCTTCTG 160897 | | |||||||| |||||||| | || | || | |||||| | | || | || Sbjct 169 GTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTG 110 Query 160898 CTACATGGGTCGCGAGTGGGAACTTTCCTACCGCCTCGGCATGCGCCCCTGGATCTGC-G 160956 ||||||||||| |||||||||||| | ||| || || |||||||| ||||| ||| | Sbjct 109 TTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGAT-TGCTG 51 Query 160957 TTGCATATTCTGCACCTGTTGCTGCTGCGAGTGCAGTATTCCTCGTCTAT 161006 |||||||||| || |||||||| ||||| | ||| || ||| | ||||| Sbjct 50 TTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTAT 1 >seq287 Length=58314 Score = 165 bits (182), Expect = 9e-36 Identities = 509/777 (66%), Gaps = 34/777 (4%) Strand=Plus/Minus Query 160617 TGGTTCGGTGTGCTGATGATCCCAACTCTGTTGGCAGCA-ACCGTCTGC-TTTATTACTG 160674 ||||| ||| | |||||| ||| ||| | | | | ||| | | ||| ||||||| || Sbjct 18388 TGGTTTGGTATTTTGATGACCCCTACTTTATAGACCGCACAACTTCTATATTTATTATTG 18329 Query 160675 CGTTCGTTGCTGCTCCCCCCGTGGACATCGACGGTATCCGTGAACCCGTTGCTGGTTCAC 160734 | ||| || ||||||||| | | || | ||||| |||||||| ||| | | || | Sbjct 18328 CATTCATTAATGCTCCCCCGATAAATATTAATGGTATTCGTGAACCTGTTTTTAGATCTC 18269 Query 160735 TGATGTATGGAAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTC-----CAAC-GCAA 160788 | | |||| ||| || || || ||| || || ||||| |||| | | || | Sbjct 18268 TACTTTATGCAAATAATATTATTTCTAGTATTATTATTCCTACTTCTGCTTCTGCAGCTA 18209 Query 160789 TTGGTCTTCACTTCTACCCCATTTGGGAAGCTGCATCTCTTGATGAATGGCTCTACAATG 160848 | ||| || || ||| | || | || ||| ||||||||||| | ||||||| Sbjct 18208 TAGGTTGGCATTTTTACTCAATCTAGG--------TCTATTGATGAATGGTTATACAATG 18157 Query 160849 GTGGTCCTTACCAACTGGTCGT---ATTTCACTTCCTGATCGGCATCTTCTGCTACATGG 160905 | |||||| |||| | || ||| || || | | | ||| | ||||| | Sbjct 18156 ACGATCCTTAAGAACTAATTGTTCAATTCTTTTTACTTAGTGT-AGCTTGT--TACATAG 18100 Query 160906 GTCGCGAGTGGGAACTTTCCTACCGCCTCGGCATGCGCCCCTGGATCTGCGTTGCATATT 160965 || | |||||| ||||| | | || | ||| | || ||||| | |||||||||| Sbjct 18099 GTGGTGAGTGGCAACTTAATTTTTGACTGAGTATGTGTCCTTGGATTTTTGTTGCATATT 18040 Query 160966 CTGCACCTGTTGCTGCTGCGAGTGCAGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTT 161025 | || | |||||| || | | | || ||| | ||||||| | || | || | || Sbjct 18039 CAGCTCGTGTTGCAACTACTATTATTGTTTTCTTGATCTATCCAATTGGCTAGGGATGTT 17980 Query 161026 TCTCTGATGGTATGCCCCTGGGTATCTCTGGTACCTTCAACTTCATGCTTGTCTTCCAGG 161085 | ||| || ||||||| || || | || || || |||||||| | | |||| ||| || Sbjct 17979 TTTCTTATAGTATGCCTCTAGGAAGCTTTGATATTTTCAACTTTAGGATTGTATTCTAGA 17920 Query 161086 CAGAACACAACATCCTGATGCACCCCTTCCACATGTTGGGTGTTGCTGGTGTCTTCGGTG 161145 | || ||||||||||| || ||||| || ||||| | || | | | | | Sbjct 17919 CTGAGCACAACATCCTTATACACCCATTTCACATATCAGGCG----TAATTACACC--AA 17866 Query 161146 GTTCTCTGTTCTCCGCAATGCATGGTTCACTGGTTACTTCTTCCCTGGTTCGTGAAACCA 161205 |||| | ||| || |||||| |||| || | || ||| || | ||||||| Sbjct 17865 CTTCT-TATTCAGTGCTATGCATCGTTCCTTGATAACCTCTAGTTTGATAAAGGAAACCA 17807 Query 161206 CTGAGAACGAGTCCCAGAACTATGGTTACA-AGTTTGGTCAAGAAGAAGAGACCTACAAC 161264 | | || | ||| || | |||||| | | | | |||| ||| | || || || Sbjct 17806 CATAAAATAAATCCGCTAATGAAAGTTACATATTCAGTTAAAGAGGAAAAAACTTATAAT 17747 Query 161265 ATCGTCGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCCTTCAACAAC 161324 ||| | |||||||||||||| || || || ||| ||||||||| | ||||||||| Sbjct 17746 ATCATAGCTGCTCATGGTTATTTTGGCCGATTGAACTTCCAATA----TATTTCAACAAC 17691 Query 161325 TCCCGTTCGTTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTCACT 161381 || | ||| || || || ||||| | || |||||| | || ||||| | ||| ||| Sbjct 17690 TCTCATTCTTTACATTTTTTCCTAGTTGCTTGGCCTATAGTAGGTATTTAGTTTACT 17634 Score = 145 bits (160), Expect = 9e-30 Identities = 320/476 (67%), Gaps = 14/476 (3%) Strand=Plus/Minus Query 160665 TTTATTACTGCGTTCGTTGCTGCTCCCCCCGTGGACATCGACGGTATCCGTGAACCCGTT 160724 ||||||| ||| ||| | |||||||||| | | || | ||||| |||||| ||| Sbjct 44880 TTTATTATTGCTTTCATCACTGCTCCCCCAATAAATATTAATGGTATTTTTGAACCTGTT 44821 Query 160725 GCTGGTTCACTGATGTATGGAAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCCAAC 160784 | | || || | |||| ||| || || || ||| || || ||||| |||| Sbjct 44820 TTTAGATCTCTACTTTATGCAAATAATATTATTTCTAGTATTATTATTCCTACTTCTGCA 44761 Query 160785 GCAATTGGTCTTCACTTCTACCCCATTTGGGAAGCTGCATCTCTTGATGAATGGCTCTAC 160844 || || ||| || || || | ||||||| ||| ||||||||||| | ||| Sbjct 44760 GCTATAGGTTGGCATTTTAACTCAATTTGGG--------TCTATTGATGAATGGTTATAC 44709 Query 160845 AATGGTGGTCCTTACCAACTGGTCGTATTTCACTTCCTGA--TCG-GCATCTTCTGCTAC 160901 || | | |||| |||| | || ||||| | | | | | | ||| | ||| Sbjct 44708 AAAGACAATGCTTATGAACTAATTGTTCAACACTTT-TAACTTAGTGTAGCTTGT--TAC 44652 Query 160902 ATGGGTCGCGAGTGGGAACTTTCCTACCGCCTCGGCATGCGCCCCTGGATCTGCGTTGCA 160961 |||||||| |||||||||||| | || || | ||| | || ||||| | |||||| Sbjct 44651 ATGGGTCGTGAGTGGGAACTTAATTTTCGACTAAGTATGTGTCCTTGGATTTTTGTTGCA 44592 Query 160962 TATTCTGCACCTGTTGCTGCTGCGAGTGCAGTATTCCTCGTCTATCCTTTCGGTCAAGGT 161021 ||||| || | |||||| |||| | | || ||| | ||||||| | ||| | || Sbjct 44591 TATTCAGCTCATGTTGCAACTGCTATTATGGTTTTCTTGATCTATCCAATTGGTTAGGGA 44532 Query 161022 TCTTTCTCTGATGGTATGCCCCTGGGTATCTCTGGTACCTTCAACTTCATGCTTGTCTTC 161081 || ||| || | |||||||| || | || | || |||||||| || |||| ||| Sbjct 44531 AGCTTTTCTAATAGCATGCCCCTAGGAACCTTTAATATTTTCAACTTTATAATTGTATTC 44472 Query 161082 CAGGCAGAACACAACATCCTGATGCACCCCTTCCACATGTTGGGTGTTGCTGGTGT 161137 |||| || ||||||||||| |||||||| || ||||| || || || |||||| Sbjct 44471 TAGGCTGAGCACAACATCCTTATGCACCCATTTCACATATTAGGCGTAATTGGTGT 44416 >seq14 Length=24855542 Score = 161 bits (178), Expect = 1e-34 Identities = 185/249 (74%), Gaps = 0/249 (0%) Strand=Plus/Minus Query 164556 ACTCAAGAGGAAGAGACTTACTCGATGGTCACTGCCAACCGCTTCTGGTCTCAGATTTTT 164615 ||||||| ||||| ||||| || |||||||| || |||||||| | || ||| || ||| Sbjct 952205 ACTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTAGTTTCAAATCTTT 952146 Query 164616 GGTATTGCTTTCAGCAATAAGCGTTGGTTGCACTTCTTTATGCTCTTTGTTCCTGTCATG 164675 || ||||||| | |||| | |||||| || ||||||||| | ||||| || || | | Sbjct 952145 GGGGTTGCTTTTTCCGATAAACATTGGTTACATTTCTTTATGTTATTTGTACCAGTAACG 952086 Query 164676 GGACTTTGGACAAGTTCTATTGGTATCATCGGTCTCGCACTCAATCTTCGTGCTTATGAT 164735 || | |||| || || | || | ||||||| | || ||| | ||||| ||||| Sbjct 952085 GGTTTATGGATGAGCGCTCTCGGATTAGTCGGTCTGACTCTAAATTTACGTGCCTATGAC 952026 Query 164736 TTTGTGTCTCAGGAGATTAGAGCAGCAGAGGATCCTGAATTTGAGACGTTCTATACGAAG 164795 || || |||||| | || | |||||||| ||||||||||||||||| ||||| | || Sbjct 952025 TTCGTTTCTCAGAAAATCCGTGCAGCAGAAGATCCTGAATTTGAGACTTTCTACATTAAA 951966 Query 164796 AACATCCTC 164804 || || ||| Sbjct 951965 AATATTCTC 951957 >seq151 Length=113734 Score = 156 bits (172), Expect = 5e-33 Identities = 567/878 (65%), Gaps = 31/878 (4%) Strand=Plus/Minus Query 160568 ACAATTCTGCGAGTGGGTAACTTCTACAAACAATCGTCTT-TACGTCGGTTGGTTCGGTG 160626 ||| ||||| | ||| |||| || || || || ||| ||| | | ||||| ||| Sbjct 5189 ACATTTCTGTAATTGGATAACCAACACTAA-AACCGCCTTCTACATTGTATGGTTTGGTA 5131 Query 160627 TGCTGATGATCCCAACTCTGTTGGCAGCA-ACCGTCTGC-TTTATTACTGCGTTCGTTGC 160684 | |||||||||| ||| | ||| | || | | ||| ||||||| ||| ||| || Sbjct 5130 TTTTGATGATCCCTACTTTATTGACCACACAACTTCTATATTTATTATTGCATTCATTAA 5071 Query 160685 TGCTCCCCCCGTGGACATCGACGGTATCCGTGAACCCGTTGCTGGTTCACTGATGTATGG 160744 ||||||||| | |||| | ||||| |||||||| ||| | | || || | |||| Sbjct 5070 TGCTCCCCCGATAAACATTAATGGTATTCGTGAACCTGTTTTTAGATCTCTACTTTATGC 5011 Query 160745 AAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTC-----CAAC-GCAATTGGTCTTCA 160798 ||| || || || ||| || || ||| | |||| | | || || ||| || Sbjct 5010 AAATAATATTATTTCTAGTATTATTATTCTTACTTCTGCTTCTGCAGCTATAGGTTGGCA 4951 Query 160799 CTTCTACCCCATTTGGGAAGCTGCATCTCTTGATGAATGGCTCTACAATGGTGGTCCTTA 160858 || ||| | || ||| ||| ||||||||||||| ||||||| |||||| Sbjct 4950 TTTTTACTCAATCTGGC--------TCTGTTGATGAATGGCTATACAATGACTATCCTTA 4899 Query 160859 CCAACTGGTCGTATTTCACTTCCTGATCGGCATCTTCTGCTACATGGGTCGCGAGTGGGA 160918 |||| | || |||| | | | | || ||||| ||| |||||| | Sbjct 4898 AGAACTAATTGTTCAATACTTTTTACTTAGTGTAGCTTGTTACATAGGTGATGAGTGGCA 4839 Query 160919 ACTTTCCTACCGCCTCGGCATGCGCCCCTGGATCTGCGTTGCATATTCTGCACCTGTTGC 160978 |||| | | | | ||| | || ||||| | ||||||||||| || | |||||| Sbjct 4838 ACTTAATTTTTGACCGAGTATGTGTCCTTGGATTTTTGTTGCATATTCAGCTCGTGTTGC 4779 Query 160979 TGCTGCGAGTGCAGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGGTAT 161038 |||| | | || ||| | ||||||| | ||| | || ||| ||| || |||| Sbjct 4778 AACTGCAATTATTGTTTTCTTGATCTATCCAATTGGTTAGGGAAGTTTTTCTTATAGTAT 4719 Query 161039 GCCCCTGGGTATCTCTGGTACCTTCAACTTCATGCTTGTCTTCCAGGCAGAACACAACAT 161098 ||| || || | | ||||| |||||||| ||| |||| ||| || | | |||||||| Sbjct 4718 GCCTCTAGGAAGTTTTGGTATTTTCAACTTTATGATTGTATTCTAGACTAAGCACAACAT 4659 Query 161099 CCTGATGCACCCCTTCCACATGTTGGGTGTTGCTGGTGTCTTCGGTGGTTCTCTGTTCTC 161158 ||| | ||||| || ||||| || || | | | | | |||| | ||| Sbjct 4658 CCTTGTACACCCATTTCACATATTAGGCG----TAATTACAAC--AACTTCT-TATTCAA 4606 Query 161159 CGCAATGCATGGTTCACTGGTTACTTCTTCCCTGGTTCGTGAAACCACTGAGAACGAGTC 161218 || |||||| |||| || | || ||| || | |||||||| | || | || Sbjct 4605 TGCTATGCATCGTTCCTTGATAACCTCTAGTTTGATAAAGGAAACCACATAAAATAAATC 4546 Query 161219 CCAGAACTATGGTTACAAGTTTGGTCAAGAAG--AAGAGACCTACAACATCGTCGCTGCT 161276 | || | |||||| || || || || || | || || || ||| | |||||| Sbjct 4545 CGCTAATGAAAGTTACAGATTCAGTTAAAGAGGAAAAAAACTTATAATATCATAGCTGCT 4486 Query 161277 CATGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCCTTCAACAACTCCCGTTCGTTG 161336 |||||||| || || || ||| |||||||| | ||||||||||| | ||| || Sbjct 4485 CATGGTTATTTTGGCCGATTGAACTTCCAAT----GTATTTCAACAACTCTCATTCTTTA 4430 Query 161337 CACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTCACTGCACTTGGTGTCTCC 161396 || || ||||| | || |||||| | || ||||| | ||| ||| | | | | | Sbjct 4429 CATTTTTTCCTAGTTGCTTGGCCTATAGTAGGTATTTAGTTTACTATTTTCGATATTAGC 4370 Query 161397 ACCATGGCATTCAACCTGAACGGATTCAACTTCAACCA 161434 | ||| | || ||||| || | || || |||||||| Sbjct 4369 ATTATGTCTTTTAACCTAAATGATTTTAATTTCAACCA 4332 >seq560 Length=20368 Score = 96.9 bits (106), Expect = 4e-15 Identities = 91/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 160971 CCTGTTGCTGCTGCGAGTGCAGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCT 161030 |||||||| ||||| | ||| | ||| | ||||||| | ||||| || || ||| Sbjct 20253 CCTGTTGCAGCTGCTACTGCTCTTTTCTTGATCTATCCAATTGGTCAGGGAAGCTTTTCT 20312 Query 161031 GATGGTATGCCCCTGGGTATCTCTGGTACCTTCAACTTCATGCTTGTCTTCCAGGC 161086 ||||||||||| || || ||||||||||| |||||||| ||| |||| |||||||| Sbjct 20313 GATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGC 20368 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559313883959600