Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Medicago_20truncatula_20[refseq_20GCF_5F000219495.3_202014-06-18] 2,187 sequences; 412,924,424 total letters Query= AAMG01000383.1 Length=435 Score E Sequences producing significant alignments: (Bits) Value seq2187 219 1e-54 seq10 219 1e-54 seq3 219 1e-54 seq2 208 2e-51 seq41 192 2e-46 seq8 187 6e-45 seq1 98.7 3e-18 >seq2187 Length=124033 Score = 219 bits (242), Expect = 1e-54 Identities = 295/407 (72%), Gaps = 13/407 (3%) Strand=Plus/Minus Query 11 GAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTA 70 ||||||||| ||||||||| ||||||||||||||||||| || ||| ||||||||||| Sbjct 26938 GAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGCGTTA 26879 Query 71 ATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAAATCCC 130 |||||| | |||||||||||||| | ||| || | | |||| | || ||||||| Sbjct 26878 TCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTTCGCCGTCAAATCCC 26819 Query 131 CGGGCTTAACCTGGGAATTGCATTTGTG---ACTGCACGACTAGAGTGTGTCAGAGGGGG 187 ||||| |||| ||| | | ||| ||| | ||||||| | || || | Sbjct 26818 AGGGCTCAACCCTGGACAGG---TGGTGAAAACTACTAAGCTAGAGTACGGTAGGGGCAG 26762 Query 188 GTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAG 247 |||||| | ||| ||| |||||||||||||| || | |||||||||||||||||| Sbjct 26761 AGGGAATTTCCGGTGGAGCGGTGAAATGCGTAGAGATCGGAAGGAACACCAATGGCGAAA 26702 Query 248 GCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTA 307 ||| | ||||| |||||||| || | |||||||| ||||||| || |||||| Sbjct 26701 GCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCGAATGGGATTA 26642 Query 308 GATACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTG---TTGGGGATTTACTTC 364 || |||| ||||||| ||| |||||||| ||||| || || | || || | Sbjct 26641 GAGACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAGGTGGCTGTGCGTATCGAC--C 26584 Query 365 CTTG--GTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409 | || | ||||||||||||| |||| ||||||||||| ||| Sbjct 26583 CGTGCAATGCTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTAC 26537 >seq10 Length=496089 Score = 219 bits (242), Expect = 1e-54 Identities = 295/407 (72%), Gaps = 13/407 (3%) Strand=Plus/Minus Query 11 GAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTA 70 ||||||||| ||||||||| ||||||||||||||||||| || ||| ||||||||||| Sbjct 188271 GAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGCGTTA 188212 Query 71 ATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAAATCCC 130 |||||| | |||||||||||||| | ||| || | | |||| | || ||||||| Sbjct 188211 TCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTTCGCCGTCAAATCCC 188152 Query 131 CGGGCTTAACCTGGGAATTGCATTTGTG---ACTGCACGACTAGAGTGTGTCAGAGGGGG 187 ||||| |||| ||| | | ||| ||| | ||||||| | || || | Sbjct 188151 AGGGCTCAACCCTGGACAGG---TGGTGAAAACTACTAAGCTAGAGTACGGTAGGGGCAG 188095 Query 188 GTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAG 247 |||||| | ||| ||| |||||||||||||| || | |||||||||||||||||| Sbjct 188094 AGGGAATTTCCGGTGGAGCGGTGAAATGCGTAGAGATCGGAAGGAACACCAATGGCGAAA 188035 Query 248 GCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTA 307 ||| | ||||| |||||||| || | |||||||| ||||||| || |||||| Sbjct 188034 GCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCGAATGGGATTA 187975 Query 308 GATACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTG---TTGGGGATTTACTTC 364 || |||| ||||||| ||| |||||||| ||||| || || | || || | Sbjct 187974 GAGACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAGGTGGCTGTGCGTATCGAC--C 187917 Query 365 CTTG--GTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409 | || | ||||||||||||| |||| ||||||||||| ||| Sbjct 187916 CGTGCAATGCTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTAC 187870 >seq3 Length=55515152 Score = 219 bits (242), Expect = 1e-54 Identities = 295/407 (72%), Gaps = 13/407 (3%) Strand=Plus/Minus Query 11 GAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTA 70 ||||||||| ||||||||| ||||||||||||||||||| || ||| ||||||||||| Sbjct 13224838 GAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGCGTTA 13224779 Query 71 ATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAAATCCC 130 |||||| | |||||||||||||| | ||| || | | |||| | || ||||||| Sbjct 13224778 TCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTTCGCCGTCAAATCCC 13224719 Query 131 CGGGCTTAACCTGGGAATTGCATTTGTG---ACTGCACGACTAGAGTGTGTCAGAGGGGG 187 ||||| |||| ||| | | ||| ||| | ||||||| | || || | Sbjct 13224718 AGGGCTCAACCCTGGACAGG---TGGTGAAAACTACTAAGCTAGAGTACGGTAGGGGCAG 13224662 Query 188 GTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAG 247 |||||| | ||| ||| |||||||||||||| || | |||||||||||||||||| Sbjct 13224661 AGGGAATTTCCGGTGGAGCGGTGAAATGCGTAGAGATCGGAAGGAACACCAATGGCGAAA 13224602 Query 248 GCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTA 307 ||| | ||||| |||||||| || | |||||||| ||||||| || |||||| Sbjct 13224601 GCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCGAATGGGATTA 13224542 Query 308 GATACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTG---TTGGGGATTTACTTC 364 || |||| ||||||| ||| |||||||| ||||| || || | || || | Sbjct 13224541 GAGACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAGGTGGCTGTGCGTATCGAC--C 13224484 Query 365 CTTG--GTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409 | || | ||||||||||||| |||| ||||||||||| ||| Sbjct 13224483 CGTGCAATGCTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTAC 13224437 Score = 120 bits (132), Expect = 8e-25 Identities = 105/131 (80%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 11 GAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTA 70 ||||||||| ||||||||| ||||||||||||||||||| || ||| ||||||||||| Sbjct 41641499 GAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGCGTTA 41641440 Query 71 ATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAAATCCC 130 |||||| | |||||||||||||| | ||| || | | |||| | || ||||||| Sbjct 41641439 TCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTTCGCCGTCAAATCCC 41641380 Query 131 CGGGCTTAACC 141 ||||| |||| Sbjct 41641379 AGGGCTCAACC 41641369 >seq2 Length=45729672 Score = 208 bits (230), Expect = 2e-51 Identities = 290/401 (72%), Gaps = 9/401 (2%) Strand=Plus/Minus Query 11 GAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTA 70 ||||||||| ||||||||| ||||||||||||||||||| || ||| ||||||||||| Sbjct 14465350 GAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGCGTTA 14465291 Query 71 ATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAAATCCC 130 |||||| | |||||||||||||| | ||| || | | |||| | || ||||||| Sbjct 14465290 TCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTTCGCCGTCAAATCCC 14465231 Query 131 CGGGCTTAACCTGGGAATTGCATTTGTGACTGC-ACGA--CTAGAGTGTGTCAGAGGGGG 187 ||||| |||| ||| | | |||| | || | ||||||| | || || Sbjct 14465230 AGGGCTCAACCCTGGACAGG---TGGTGAAAACTACTAAGCTAGAGTACGGTAGGGGCAA 14465174 Query 188 GTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAG 247 |||||| | || ||| |||||||||||||| || | |||||||||||||||||| Sbjct 14465173 AGGGAATTTCCGATGGAGCGGTGAAATGCGTAGAGATCGGAAGGAACACCAATGGCGAAA 14465114 Query 248 GCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTA 307 ||| | ||||| |||||||| || | |||||||| ||||||| || |||||| Sbjct 14465113 GCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCGAATGGGATTA 14465054 Query 308 GATACCCTGGTAGTCCACGCCCTAAACGATATCAACTA-GTTGTTGGGGATTTACTTCCT 366 || |||| ||||||| ||| |||||||| |||| || |||| | | | || Sbjct 14465053 GAGACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAGGTGGTTGTGCGTATCGACCCG 14464994 Query 367 TG--GTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGA 405 || | ||||||||||||| |||| ||||||||||| Sbjct 14464993 TGCAATGTTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGA 14464953 >seq41 Length=124265 Score = 192 bits (212), Expect = 2e-46 Identities = 246/334 (74%), Gaps = 10/334 (3%) Strand=Plus/Minus Query 8 GAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCG 67 || ||| |||| |||||||||| |||||||||||||||||||| ||| ||| ||||| | Sbjct 90856 GAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGGGGCAAGTG 90797 Query 68 TTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAAA- 126 || ||||||| ||||||||||||| | || ||||||| | | ||| ||||| Sbjct 90796 TTCTTCGGAATGACTGGGCGTAAAGGGCACGTAGGCGGTG-----AATCGGGT-TGAAAG 90743 Query 127 TCCCCG--GGCTTAACCTGG-GAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGAG 183 | | | | || |||| | | ||| | | || ||| ||||| | ||||| Sbjct 90742 TTAAAGTCGCCAAAAACTGGTGGAATGCTCTCGAAACCAATTCACTTGAGTGAGACAGAG 90683 Query 184 GGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGC 243 | | |||||||| | |||||| ||||||| || |||| | | |||||| |||| || Sbjct 90682 GAGAGTGGAATTTCGTGTGTAGGGGTGAAATCCGCAGATCTACGAAGGAACGCCAAAAGC 90623 Query 244 GAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGG 303 ||||||||| | ||||| || |||||| | ||||||| |||||||| ||| || Sbjct 90622 GAAGGCAGCTCTCTGGGTCCCTACCGACGCTGGAGTGCGAAAGCATGGGGAGCGAACGGG 90563 Query 304 ATTAGATACCCTGGTAGTCCACGCCCTAAACGAT 337 ||||||||||||||||||||| ||| |||||||| Sbjct 90562 ATTAGATACCCTGGTAGTCCATGCCGTAAACGAT 90529 Score = 183 bits (202), Expect = 8e-44 Identities = 244/334 (73%), Gaps = 10/334 (3%) Strand=Plus/Plus Query 8 GAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCG 67 || ||| |||| |||||||||| |||||||||||||||||||| ||| ||| ||||| | Sbjct 61065 GAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGGGGCAAGTG 61124 Query 68 TTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAAA- 126 || ||||||| ||||||||||||| | || ||||||| | | ||| ||||| Sbjct 61125 TTCTTCGGAATGACTGGGCGTAAAGGGCACGTAGGCGGTG-----AATCGGGT-TGAAAG 61178 Query 127 TCCCCG--GGCTTAACCTGG-GAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGAG 183 | | | | || |||| | | ||| | | || ||| ||||| | ||||| Sbjct 61179 TTAAAGTCGCCAAAAACTGGTGGAATGCTCTCGAAACCAATTCACTTGAGTGAGACAGAG 61238 Query 184 GGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGC 243 | | |||||||| | |||||| ||||||| || |||| | |||||| |||| || Sbjct 61239 GAGAGTGGAATTTCGTGTGTAGGGGTGAAATCCGCAGATCAACGAAGGAACGCCAAAAGC 61298 Query 244 GAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGG 303 ||||||||| | ||||| || |||||| | ||||||| | |||||| ||| || Sbjct 61299 GAAGGCAGCTCTCTGGGTCCCTACCGACGCTGGAGTGCGAAAGCATAGGGAGCGAACGGG 61358 Query 304 ATTAGATACCCTGGTAGTCCACGCCCTAAACGAT 337 ||||||||||||||||||||| ||| |||||||| Sbjct 61359 ATTAGATACCCTGGTAGTCCATGCCGTAAACGAT 61392 >seq8 Length=45569985 Score = 187 bits (206), Expect = 6e-45 Identities = 289/407 (71%), Gaps = 13/407 (3%) Strand=Plus/Minus Query 11 GAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTA 70 ||||||||| ||||||||| |||||||||||||| |||| || ||| ||||||||||| Sbjct 15006343 GAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCAGTAAGACAGAGGATGCAAGCGTTA 15006284 Query 71 ATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAAATCCC 130 || ||| | |||||||||||||| | ||| || | | |||| | || ||||| | Sbjct 15006283 TCCGAAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTTCGCCGTCAAATCTC 15006224 Query 131 CGGGCTTAACCTGGGAATTGCATTTGTGACTGC-ACGA--CTAGAGTGTGTCAGAGGGGG 187 ||||| || | ||| | |||||| | || | ||||||| | || || | Sbjct 15006223 AGGGCTCAAACCTGGACAGG---TTGTGAAAACTACTAAGCTAGAGTACGGTAGGGGCAG 15006167 Query 188 GTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAG 247 |||||| | ||| || ||||||||||||| || | |||||||||||||||||| Sbjct 15006166 AGGGAATTTCCGGTGGAGTGATGAAATGCGTAGAGATCGGAAGGAACACCAATGGCGAAA 15006107 Query 248 GCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTA 307 ||| | ||||| ||||| || || | |||||||| ||||||| || |||||| Sbjct 15006106 GCACTCTGCTGGGCCGACACTAACACTGAGAGACGAAAGCTAGGGGAGCGAATGGGATTA 15006047 Query 308 GATACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTG---TTGGGGATTTACTTC 364 || ||||| ||||||| ||| |||||||| ||||| | || | || || | Sbjct 15006046 GAGACCCTAGTAGTCCTAGCCGTAAACGATGGATACTAGGCGGCTGTGTGTATCGAC--C 15005989 Query 365 CTTG--GTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409 | || || ||||||||| ||| |||| || |||||||| ||| Sbjct 15005988 CATGCAATACTGTAGCTAACACGTTAAGTATCCCTCCTGGGGAGTAC 15005942 >seq1 Length=52991155 Score = 98.7 bits (108), Expect = 3e-18 Identities = 148/209 (71%), Gaps = 6/209 (3%) Strand=Plus/Minus Query 44 GCGGTAATACGTAGGGTGCAAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGC 103 ||| ||| || ||| ||||||||||| |||||| | |||||||||||||| | ||| Sbjct 43192552 GCGATAAGACAGAGGATGCAAGCGTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGT 43192493 Query 104 GGTTGTGTAAGACAGGTGTGAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTG---AC 160 || | | |||| || ||||||| ||||| |||| ||| | | ||| || Sbjct 43192492 GGCTTTTTAAGTTCACCGTCAAATCCCAGGGCTCAACCCTGGACAGG---TGGTGAAAAC 43192436 Query 161 TGCACGACTAGAGTGTGTCAGAGGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAG 220 | | ||||||| | || || | |||||| | ||| ||| ||||||||||||| Sbjct 43192435 TACTAAGCTAGAGTACGGTAGGGGCAGAGGGAATTTCCGGTGGAGCGGTGAAATGCGTAG 43192376 Query 221 ATATGTGGAGGAACACCAATGGCGAAGGC 249 | || | |||||||||||||||||| || Sbjct 43192375 AGATCGGAAGGAACACCAATGGCGAAAGC 43192347 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1289571796448