Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Medicago_20truncatula_20[refseq_20GCF_5F000219495.3_202014-06-18] 2,187 sequences; 412,924,424 total letters Query= AAMG01000599.1 Length=180 Score E Sequences producing significant alignments: (Bits) Value seq2187 93.3 4e-17 seq10 93.3 4e-17 seq4 93.3 4e-17 seq41 91.5 1e-16 seq1 87.8 2e-15 seq5 84.2 2e-14 seq87 78.8 9e-13 >seq2187 Length=124033 Score = 93.3 bits (102), Expect = 4e-17 Identities = 84/106 (79%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106 ||||| || |||||||| ||||||||||| |||||||||| ||| ||||| || Sbjct 21944 GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGT 21885 Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||| | |||| ||| |||||||||||| ||||||||||||||| Sbjct 21884 AAGACCATGTATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTTAA 21839 >seq10 Length=496089 Score = 93.3 bits (102), Expect = 4e-17 Identities = 84/106 (79%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106 ||||| || |||||||| ||||||||||| |||||||||| ||| ||||| || Sbjct 183185 GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGT 183126 Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||| | |||| ||| |||||||||||| ||||||||||||||| Sbjct 183125 AAGACCATGTATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTTAA 183080 >seq4 Length=56582383 Score = 93.3 bits (102), Expect = 4e-17 Identities = 84/106 (79%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106 ||||| || |||||||| ||||||||||| |||||||||| ||| ||||| || Sbjct 494331 GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGT 494390 Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||| | |||| ||| |||||||||||| ||||||||||||||| Sbjct 494391 AAGACCATGTATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTTAA 494436 Score = 93.3 bits (102), Expect = 4e-17 Identities = 84/106 (79%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106 ||||| || |||||||| ||||||||||| |||||||||| ||| ||||| || Sbjct 18191993 GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGT 18192052 Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||| | |||| ||| |||||||||||| ||||||||||||||| Sbjct 18192053 AAGACCATGTATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTTAA 18192098 Score = 84.2 bits (92), Expect = 2e-14 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106 ||||| || |||||||| |||||||||||| |||||||||| || ||||| || Sbjct 50525864 GGTCGCAGTGACCAGGCCCGGGCGACTGTTTATCAAAAACACAGGTCTTCGCAAAGTCGT 50525923 Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||| | |||| ||| ||||| ||| || ||||||||||||||| Sbjct 50525924 AAGACCATGTATGGGGGCTGACGTCTGTCCAGTGCCGGAAGGTTAA 50525969 Score = 82.4 bits (90), Expect = 7e-14 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 55 ATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGAC 114 |||||||| | |||||||||||||||||||||| ||||||| || | || || Sbjct 36226305 ATACCAGGGGGTAGCGACTGTTTATTAAAAACACATGACTCTGCTAAGTGGTAACACGAT 36226364 Query 115 GTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGT 149 |||||| || | || |||||||||||| ||||||| Sbjct 36226365 GTATAGAGTCTAACACCTGCCCGGTGCTGGAAGGT 36226399 Score = 78.8 bits (86), Expect = 9e-13 Identities = 81/106 (76%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106 ||||| || ||||||| | |||||||||| ||||| |||| ||||||||| | Sbjct 16337362 GGTCGCAGTGACCAGGCTTAAGTGACTGTTTATCAAAAATACAGGTCTCTGCAAAGTAGT 16337303 Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||| | |||| ||| |||||||||||| |||| |||||||||| Sbjct 16337302 AAGACCATGTATGGGGGTTGACGCCTGCCCAGTGCAGGAAGGTTAA 16337257 >seq41 Length=124265 Score = 91.5 bits (100), Expect = 1e-16 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 55 ATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGAC 114 |||||||| | ||||||||||||||||||||||| ||||||| || | || || Sbjct 7528 ATACCAGGGGGTAGCGACTGTTTATTAAAAACACAGGACTCTGCTAAGTGGTAACACGAT 7587 Query 115 GTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGT 149 |||||| || |||| |||||||||||| ||||||| Sbjct 7588 GTATAGAGTCTGACACCTGCCCGGTGCTGGAAGGT 7622 >seq1 Length=52991155 Score = 87.8 bits (96), Expect = 2e-15 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106 ||||| || |||||||| ||||||||||| |||||||||| ||| ||||| || Sbjct 14404860 GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGT 14404919 Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||| | |||| ||| ||||| |||||| ||||||||||||||| Sbjct 14404920 AAGACCATGTATGGGGGCTGACGTCTGCCCAGTGCCGGAAGGTTAA 14404965 >seq5 Length=43630510 Score = 84.2 bits (92), Expect = 2e-14 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106 ||||| || |||||||| ||||||||||| |||| ||||| ||| ||||| || Sbjct 34659330 GGTCGCAGTGACCAGGCCCTGGCGACTGTTTACCAAAAGCACAGGTCTCCGCAAAGTCGT 34659389 Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||| | |||| ||| ||||||||||| ||||||||||||||| Sbjct 34659390 AAGACCATGTATGGGGGCTGACGCCTGCCTAGTGCCGGAAGGTTAA 34659435 >seq87 Length=60467 Score = 78.8 bits (86), Expect = 9e-13 Identities = 81/106 (76%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106 ||||| || ||||||| | |||||||||| ||||| |||| ||||||||| | Sbjct 55498 GGTCGCAGTGACCAGGCTTAAGTGACTGTTTATCAAAAATACAGGTCTCTGCAAAGTAGT 55557 Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||| | |||| ||| |||||||||||| |||| |||||||||| Sbjct 55558 AAGACCATGTATGGGGGTTGACGCCTGCCCAGTGCAGGAAGGTTAA 55603 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476789898247