Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Medicago_20truncatula_20[refseq_20GCF_5F000219495.3_202014-06-18] 2,187 sequences; 412,924,424 total letters Query= AAMG01001083.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value seq2187 178 3e-42 seq10 178 3e-42 seq4 178 3e-42 seq2 152 1e-34 seq5 140 6e-31 seq41 102 2e-19 >seq2187 Length=124033 Score = 178 bits (196), Expect = 3e-42 Identities = 179/230 (78%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||||| |||| | |||||| ||||||| |||||||||| ||||||||||| Sbjct 21468 GGGACAGTCTCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGC 21409 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGT 229 | ||||| | |||| | || ||| | || | | |||||||||||| ||||| Sbjct 21408 GTGCAAAGGTTTCCTCGGGCCAGACGGAGATTG-GCCCTCGAGTGCAAAGGCAGAAGGGA 21350 Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289 | |||||||| | |||| | ||| |||||||||||||||||| |||| ||||||| ||| Sbjct 21349 GCTTGACTGCAAGACCCACCCGTCGAGCAGGGACGAAAGTCGGCCTTAGTGATCCGACGG 21290 Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 ||| || ||||| ||||||||||| ||||||||||| ||| || |||||| Sbjct 21289 TGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATA 21240 >seq10 Length=496089 Score = 178 bits (196), Expect = 3e-42 Identities = 179/230 (78%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||||| |||| | |||||| ||||||| |||||||||| ||||||||||| Sbjct 182709 GGGACAGTCTCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGC 182650 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGT 229 | ||||| | |||| | || ||| | || | | |||||||||||| ||||| Sbjct 182649 GTGCAAAGGTTTCCTCGGGCCAGACGGAGATTG-GCCCTCGAGTGCAAAGGCAGAAGGGA 182591 Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289 | |||||||| | |||| | ||| |||||||||||||||||| |||| ||||||| ||| Sbjct 182590 GCTTGACTGCAAGACCCACCCGTCGAGCAGGGACGAAAGTCGGCCTTAGTGATCCGACGG 182531 Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 ||| || ||||| ||||||||||| ||||||||||| ||| || |||||| Sbjct 182530 TGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATA 182481 >seq4 Length=56582383 Score = 178 bits (196), Expect = 3e-42 Identities = 179/230 (78%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||||| |||| | |||||| ||||||| |||||||||| ||||||||||| Sbjct 494808 GGGACAGTCTCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGC 494867 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGT 229 | ||||| | |||| | || ||| | || | | |||||||||||| ||||| Sbjct 494868 GTGCAAAGGTTTCCTCGGGCCAGACGGAGATTG-GCCCTCGAGTGCAAAGGCAGAAGGGA 494926 Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289 | |||||||| | |||| | ||| |||||||||||||||||| |||| ||||||| ||| Sbjct 494927 GCTTGACTGCAAGACCCACCCGTCGAGCAGGGACGAAAGTCGGCCTTAGTGATCCGACGG 494986 Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 ||| || ||||| ||||||||||| ||||||||||| ||| || |||||| Sbjct 494987 TGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATA 495036 Score = 174 bits (192), Expect = 3e-41 Identities = 178/230 (77%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||||| |||| | |||||| ||||||| |||||||||| ||||||||||| Sbjct 18192469 GGGACAGTCTCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGC 18192528 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGT 229 | ||||| | |||| | || ||| | || | | |||||||||||| ||||| Sbjct 18192529 GTGCAAAGGTTTCCTCGGGCCAGACGGAGATTG-GCCCTCGAGTGCAAAGGCAGAAGGGA 18192587 Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289 | |||||||| | |||| | ||| ||||||||||||||||| |||| ||||||| ||| Sbjct 18192588 GCTTGACTGCAAGACCCACCCGTCGAGCAGGGACGAAAGTCGACCTTAGTGATCCGACGG 18192647 Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 ||| || ||||| ||||||||||| ||||||||||| ||| || |||||| Sbjct 18192648 TGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATA 18192697 >seq2 Length=45729672 Score = 152 bits (168), Expect = 1e-34 Identities = 111/129 (86%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 211 AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTC 270 |||||||||||| ||||| |||||||||| | |||| | ||| |||||||||||||||| Sbjct 425016 AGTGCAAAGGCAGAAGGGAGTTTGACTGCAAGACCCACCCGTCGAGCAGGGACGAAAGTC 424957 Query 271 GGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACC 330 || |||||||||||| |||||| || ||||| || |||| ||| ||||||||||| |||| Sbjct 424956 GGCCTTAATGATCCGACGGTGCCGAGTGGAAGGGTCGTCACTCAACGGATAAAAGTTACC 424897 Query 331 CTGGGGATA 339 || |||||| Sbjct 424896 CTAGGGATA 424888 >seq5 Length=43630510 Score = 140 bits (154), Expect = 6e-31 Identities = 171/230 (74%), Gaps = 5/230 (2%) Strand=Plus/Plus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||||| |||| | |||||| |||||| | |||||||| ||||||||||| Sbjct 34659813 GGGACAGTCTCAGGTAGACAGTTTC---GGGGCGTAGGTCTCCCAAAAGGTAACGGAGGC 34659869 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGT 229 | ||||| | ||| | || ||| | || | | |||| ||||||| |||| Sbjct 34659870 GTGCAAAGGTTTCCTTGGGCCAGACGGAGATTG-GCCCTCGAGTGTAAAGGCAGAAGGTA 34659928 Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289 | |||||||| | ||| | ||| ||||||||||||| || | |||| ||||||| ||| Sbjct 34659929 GCTTGACTGCAAGACCTACCCGTCGAGCAGGGACGAAATTCAGCCTTAGTGATCCGACGG 34659988 Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 |||||| ||||| ||||||||||| ||| ||||||| ||| || |||||| Sbjct 34659989 TGCTGAGTGGAAGGGCCGTCGCTCAACGAATAAAAGTTACTCTAGGGATA 34660038 >seq41 Length=124265 Score = 102 bits (112), Expect = 2e-19 Identities = 162/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 110 CGGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGG 169 ||||||| || || ||| ||||| ||||||||| |||||| ||||||||||||||| Sbjct 7976 CGGGACACTGCGAGGTGGGTAGTTTATCTGGGGCGGATGCCTCCTAAAGAGTAACGGAGG 8035 Query 170 CGCCCAAAGATACCCTCA-GCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGG 228 | | ||| || |||| ||| ||| | || || | || || | ||| Sbjct 8036 TGTGCGAAGGTAGGCTCAAGCTAAGATTCTGCTCGTGAGC-----GTAATGGTATAAGCC 8090 Query 229 TGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCG 288 || |||||| || ||| | ||| | ||| |||||||||||| | || |||||||| Sbjct 8091 TGCCTGACTGTGAGACCGACTGGTCGAACAGAGACGAAAGTCGGCCATAGTGATCCGGGA 8150 Query 289 GTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 || | ||||| ||| |||||| |||||| |||| ||| | ||||||| Sbjct 8151 GTCCCTTGTGGAAGGGCTCTCGCTCAACGGATCAAAGGTACGCCGGGGATA 8201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 982378514912