Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Medicago_20truncatula_20[refseq_20GCF_5F000219495.3_202014-06-18] 2,187 sequences; 412,924,424 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq2187 223 7e-56 seq3 223 7e-56 seq2 223 7e-56 seq10 217 3e-54 seq41 206 6e-51 seq8 190 4e-46 seq1 80.6 6e-13 >seq2187 Length=124033 Score = 223 bits (246), Expect = 7e-56 Identities = 237/309 (77%), Gaps = 18/309 (6%) Strand=Plus/Plus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||||||||| || |||||||||||||||||| || |||||||||||||||||| Sbjct 27003 CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTC 27061 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 |||||||||||||| || ||||||||| |||||||| |||||||||||||| |||||| | Sbjct 27062 CCGTAGGAGTCTGGGCCTTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCT 27121 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCAT 208 || |||| ||||||||| ||| ||||||||||||||||||||||| ||| || | Sbjct 27122 ACTGATCACCGCCTTGGTAAGCTATTACCTCACCAACTAGCTAATCAGACGCGAGCCC-- 27179 Query 209 CTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTTCTCCCGTAGGACGTATGCGGTATTAGC 268 || | | || || ||| ||||| | | | | | || | ||||||||| Sbjct 27180 CTCCTTGGGC----------GGATTCCTCCTTTCGCTCCTCAG-CTTACGGGGTATTAGC 27228 Query 269 GTCCGTTTCCGAACGTTATCCCCCACTACCA--GGCAGATTCCTAGGCATTACTCACCCG 326 |||||||| ||| | ||| || ||| ||||| ||| || || ||||||||||| Sbjct 27229 AGCCGTTTCCAGCTGTTGTTCCC--CTCCCAAGGGCAGGTTCTTACGCGTTACTCACCCG 27286 Query 327 TCCGCCGCT 335 |||||| || Sbjct 27287 TCCGCCACT 27295 >seq3 Length=55515152 Score = 223 bits (246), Expect = 7e-56 Identities = 237/309 (77%), Gaps = 18/309 (6%) Strand=Plus/Plus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||||||||| || |||||||||||||||||| || |||||||||||||||||| Sbjct 13224903 CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTC 13224961 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 |||||||||||||| || ||||||||| |||||||| |||||||||||||| |||||| | Sbjct 13224962 CCGTAGGAGTCTGGGCCTTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCT 13225021 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCAT 208 || |||| ||||||||| ||| ||||||||||||||||||||||| ||| || | Sbjct 13225022 ACTGATCACCGCCTTGGTAAGCTATTACCTCACCAACTAGCTAATCAGACGCGAGCCC-- 13225079 Query 209 CTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTTCTCCCGTAGGACGTATGCGGTATTAGC 268 || | | || || ||| ||||| | | | | | || | ||||||||| Sbjct 13225080 CTCCTTGGGC----------GGATTCCTCCTTTCGCTCCTCAG-CTTACGGGGTATTAGC 13225128 Query 269 GTCCGTTTCCGAACGTTATCCCCCACTACCA--GGCAGATTCCTAGGCATTACTCACCCG 326 |||||||| ||| | ||| || ||| ||||| ||| || || ||||||||||| Sbjct 13225129 AGCCGTTTCCAGCTGTTGTTCCC--CTCCCAAGGGCAGGTTCTTACGCGTTACTCACCCG 13225186 Query 327 TCCGCCGCT 335 |||||| || Sbjct 13225187 TCCGCCACT 13225195 >seq2 Length=45729672 Score = 223 bits (246), Expect = 7e-56 Identities = 237/309 (77%), Gaps = 18/309 (6%) Strand=Plus/Plus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||||||||| || |||||||||||||||||| || |||||||||||||||||| Sbjct 14465415 CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTC 14465473 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 |||||||||||||| || ||||||||| |||||||| |||||||||||||| |||||| | Sbjct 14465474 CCGTAGGAGTCTGGGCCTTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCT 14465533 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCAT 208 || |||| ||||||||| ||| ||||||||||||||||||||||| ||| || | Sbjct 14465534 ACTGATCACCGCCTTGGTAAGCTATTACCTCACCAACTAGCTAATCAGACGCGAGCCC-- 14465591 Query 209 CTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTTCTCCCGTAGGACGTATGCGGTATTAGC 268 || | | || || ||| ||||| | | | | | || | ||||||||| Sbjct 14465592 CTCCTTGGGC----------GGATTCCTCCTTTCGCTCCTCAG-CTTACGGGGTATTAGC 14465640 Query 269 GTCCGTTTCCGAACGTTATCCCCCACTACCA--GGCAGATTCCTAGGCATTACTCACCCG 326 |||||||| ||| | ||| || ||| ||||| ||| || || ||||||||||| Sbjct 14465641 AGCCGTTTCCAGCTGTTGTTCCC--CTCCCAAGGGCAGGTTCTTACGCGTTACTCACCCG 14465698 Query 327 TCCGCCGCT 335 |||||| || Sbjct 14465699 TCCGCCACT 14465707 Score = 87.8 bits (96), Expect = 4e-15 Identities = 62/71 (87%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 96 AGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATC 155 ||||||| || ||||||||| ||| |||| ||||||||||||||||||||| ||| |||| Sbjct 16601682 AGTCTGGGCCTTGTCTCAGTCCCAATGTGGCTGATCATCCTCTCAGACCAGCTACTGATC 16601623 Query 156 GTCGCCTTGGT 166 ||||||||| Sbjct 16601622 ACCGCCTTGGT 16601612 >seq10 Length=496089 Score = 217 bits (240), Expect = 3e-54 Identities = 151/170 (89%), Gaps = 1/170 (1%) Strand=Plus/Plus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||||||||| || |||||||||||||||||| || |||||||||||||||||| Sbjct 188336 CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTC 188394 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 |||||||||||||| |||||||||||| |||||||| |||||||||||||| |||||| | Sbjct 188395 CCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCT 188454 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGAC 198 || |||| |||||||||| ||| ||| ||||||||||||||||||| ||| Sbjct 188455 ACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGAC 188504 >seq41 Length=124265 Score = 206 bits (228), Expect = 6e-51 Identities = 180/220 (82%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 1 CTTTACAATCCGAA--GACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGC 58 |||||||| | | | | ||||||| ||| |||||| |||| ||||||| ||||||||| Sbjct 61030 CTTTACAAGCGGCATTGCCCTTCTT-CACTCACGCGATATTG-CTGGATCGGGCTTTCGC 60973 Query 59 CCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCC 118 ||||||||||| |||||||||||||||| ||||| |||||| || |||||||||||| || Sbjct 60972 CCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCC 60913 Query 119 AGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCT 178 |||||| |||||||||| ||||||| || | ||| | | |||||| |||| |||||| Sbjct 60912 AGTGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCT 60853 Query 179 CACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGC 218 |||||||| ||||| | || ||||||||| | ||||| Sbjct 60852 GACCAACTACCTAATACTACGCAGGCTCATCAAACAGCGC 60813 Score = 206 bits (228), Expect = 6e-51 Identities = 180/220 (82%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 1 CTTTACAATCCGAA--GACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGC 58 |||||||| | | | | ||||||| ||| |||||| |||| ||||||| ||||||||| Sbjct 90891 CTTTACAAGCGGCATTGCCCTTCTT-CACTCACGCGATATTG-CTGGATCGGGCTTTCGC 90948 Query 59 CCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCC 118 ||||||||||| |||||||||||||||| ||||| |||||| || |||||||||||| || Sbjct 90949 CCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCC 91008 Query 119 AGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCT 178 |||||| |||||||||| ||||||| || | ||| | | |||||| |||| |||||| Sbjct 91009 AGTGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCT 91068 Query 179 CACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGC 218 |||||||| ||||| | || ||||||||| | ||||| Sbjct 91069 GACCAACTACCTAATACTACGCAGGCTCATCAAACAGCGC 91108 >seq8 Length=45569985 Score = 190 bits (210), Expect = 4e-46 Identities = 145/170 (85%), Gaps = 1/170 (1%) Strand=Plus/Plus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||| ||||| || ||||||||||||| ||||| || ||||| |||||||||||| Sbjct 15006408 CACGCGACATTG-CTCCATCAGGCTTTCGCGCATTGCGGAAAATTCCTCACTGCTGCCTC 15006466 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 |||||||||||||| || ||||||||| |||||||| ||||||||||||| ||||| | Sbjct 15006467 CCGTAGGAGTCTGGGCCTTGTCTCAGTCCCAGTGTGGATGATCATCCTCTCGGACCAACT 15006526 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGAC 198 || |||| | ||||||| ||| ||||||||||||||||||||||| ||| Sbjct 15006527 ACTGATCACCACCTTGGTAAGCTATTACCTCACCAACTAGCTAATCAGAC 15006576 >seq1 Length=52991155 Score = 80.6 bits (88), Expect = 6e-13 Identities = 76/97 (78%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 59 CCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCC 118 |||||| || | |||||||||||||||| ||| ||||||| || || |||| | || Sbjct 593359 CCATTGCAGAAAACTCCCCACTGCTGCCTCTTGTAAGAGTCTGAGCCTTGCCTCAATCCC 593300 Query 119 AGTGTGACTGATCATCCTCTCAGACCAGTTACGGATC 155 || || |||||||||||||| |||||| || |||| Sbjct 593299 AGATTGGCTGATCATCCTCTCGGACCAGCTATTGATC 593263 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071976555360