Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Medicago_20truncatula_20[refseq_20GCF_5F000219495.3_202014-06-18]
2,187 sequences; 412,924,424 total letters
Query= AAMG01001178.1
Length=367
Score E
Sequences producing significant alignments: (Bits) Value
seq2187 223 7e-56
seq3 223 7e-56
seq2 223 7e-56
seq10 217 3e-54
seq41 206 6e-51
seq8 190 4e-46
seq1 80.6 6e-13
>seq2187
Length=124033
Score = 223 bits (246), Expect = 7e-56
Identities = 237/309 (77%), Gaps = 18/309 (6%)
Strand=Plus/Plus
Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88
|||||||||||| || |||||||||||||||||| || ||||||||||||||||||
Sbjct 27003 CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTC 27061
Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148
|||||||||||||| || ||||||||| |||||||| |||||||||||||| |||||| |
Sbjct 27062 CCGTAGGAGTCTGGGCCTTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCT 27121
Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCAT 208
|| |||| ||||||||| ||| ||||||||||||||||||||||| ||| || |
Sbjct 27122 ACTGATCACCGCCTTGGTAAGCTATTACCTCACCAACTAGCTAATCAGACGCGAGCCC-- 27179
Query 209 CTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTTCTCCCGTAGGACGTATGCGGTATTAGC 268
|| | | || || ||| ||||| | | | | | || | |||||||||
Sbjct 27180 CTCCTTGGGC----------GGATTCCTCCTTTCGCTCCTCAG-CTTACGGGGTATTAGC 27228
Query 269 GTCCGTTTCCGAACGTTATCCCCCACTACCA--GGCAGATTCCTAGGCATTACTCACCCG 326
|||||||| ||| | ||| || ||| ||||| ||| || || |||||||||||
Sbjct 27229 AGCCGTTTCCAGCTGTTGTTCCC--CTCCCAAGGGCAGGTTCTTACGCGTTACTCACCCG 27286
Query 327 TCCGCCGCT 335
|||||| ||
Sbjct 27287 TCCGCCACT 27295
>seq3
Length=55515152
Score = 223 bits (246), Expect = 7e-56
Identities = 237/309 (77%), Gaps = 18/309 (6%)
Strand=Plus/Plus
Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88
|||||||||||| || |||||||||||||||||| || ||||||||||||||||||
Sbjct 13224903 CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTC 13224961
Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148
|||||||||||||| || ||||||||| |||||||| |||||||||||||| |||||| |
Sbjct 13224962 CCGTAGGAGTCTGGGCCTTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCT 13225021
Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCAT 208
|| |||| ||||||||| ||| ||||||||||||||||||||||| ||| || |
Sbjct 13225022 ACTGATCACCGCCTTGGTAAGCTATTACCTCACCAACTAGCTAATCAGACGCGAGCCC-- 13225079
Query 209 CTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTTCTCCCGTAGGACGTATGCGGTATTAGC 268
|| | | || || ||| ||||| | | | | | || | |||||||||
Sbjct 13225080 CTCCTTGGGC----------GGATTCCTCCTTTCGCTCCTCAG-CTTACGGGGTATTAGC 13225128
Query 269 GTCCGTTTCCGAACGTTATCCCCCACTACCA--GGCAGATTCCTAGGCATTACTCACCCG 326
|||||||| ||| | ||| || ||| ||||| ||| || || |||||||||||
Sbjct 13225129 AGCCGTTTCCAGCTGTTGTTCCC--CTCCCAAGGGCAGGTTCTTACGCGTTACTCACCCG 13225186
Query 327 TCCGCCGCT 335
|||||| ||
Sbjct 13225187 TCCGCCACT 13225195
>seq2
Length=45729672
Score = 223 bits (246), Expect = 7e-56
Identities = 237/309 (77%), Gaps = 18/309 (6%)
Strand=Plus/Plus
Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88
|||||||||||| || |||||||||||||||||| || ||||||||||||||||||
Sbjct 14465415 CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTC 14465473
Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148
|||||||||||||| || ||||||||| |||||||| |||||||||||||| |||||| |
Sbjct 14465474 CCGTAGGAGTCTGGGCCTTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCT 14465533
Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCAT 208
|| |||| ||||||||| ||| ||||||||||||||||||||||| ||| || |
Sbjct 14465534 ACTGATCACCGCCTTGGTAAGCTATTACCTCACCAACTAGCTAATCAGACGCGAGCCC-- 14465591
Query 209 CTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTTCTCCCGTAGGACGTATGCGGTATTAGC 268
|| | | || || ||| ||||| | | | | | || | |||||||||
Sbjct 14465592 CTCCTTGGGC----------GGATTCCTCCTTTCGCTCCTCAG-CTTACGGGGTATTAGC 14465640
Query 269 GTCCGTTTCCGAACGTTATCCCCCACTACCA--GGCAGATTCCTAGGCATTACTCACCCG 326
|||||||| ||| | ||| || ||| ||||| ||| || || |||||||||||
Sbjct 14465641 AGCCGTTTCCAGCTGTTGTTCCC--CTCCCAAGGGCAGGTTCTTACGCGTTACTCACCCG 14465698
Query 327 TCCGCCGCT 335
|||||| ||
Sbjct 14465699 TCCGCCACT 14465707
Score = 87.8 bits (96), Expect = 4e-15
Identities = 62/71 (87%), Gaps = 0/71 (0%)
Strand=Plus/Minus
Query 96 AGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATC 155
||||||| || ||||||||| ||| |||| ||||||||||||||||||||| ||| ||||
Sbjct 16601682 AGTCTGGGCCTTGTCTCAGTCCCAATGTGGCTGATCATCCTCTCAGACCAGCTACTGATC 16601623
Query 156 GTCGCCTTGGT 166
|||||||||
Sbjct 16601622 ACCGCCTTGGT 16601612
>seq10
Length=496089
Score = 217 bits (240), Expect = 3e-54
Identities = 151/170 (89%), Gaps = 1/170 (1%)
Strand=Plus/Plus
Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88
|||||||||||| || |||||||||||||||||| || ||||||||||||||||||
Sbjct 188336 CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTC 188394
Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148
|||||||||||||| |||||||||||| |||||||| |||||||||||||| |||||| |
Sbjct 188395 CCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCT 188454
Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGAC 198
|| |||| |||||||||| ||| ||| ||||||||||||||||||| |||
Sbjct 188455 ACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGAC 188504
>seq41
Length=124265
Score = 206 bits (228), Expect = 6e-51
Identities = 180/220 (82%), Gaps = 4/220 (2%)
Strand=Plus/Minus
Query 1 CTTTACAATCCGAA--GACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGC 58
|||||||| | | | | ||||||| ||| |||||| |||| ||||||| |||||||||
Sbjct 61030 CTTTACAAGCGGCATTGCCCTTCTT-CACTCACGCGATATTG-CTGGATCGGGCTTTCGC 60973
Query 59 CCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCC 118
||||||||||| |||||||||||||||| ||||| |||||| || |||||||||||| ||
Sbjct 60972 CCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCC 60913
Query 119 AGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCT 178
|||||| |||||||||| ||||||| || | ||| | | |||||| |||| ||||||
Sbjct 60912 AGTGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCT 60853
Query 179 CACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGC 218
|||||||| ||||| | || ||||||||| | |||||
Sbjct 60852 GACCAACTACCTAATACTACGCAGGCTCATCAAACAGCGC 60813
Score = 206 bits (228), Expect = 6e-51
Identities = 180/220 (82%), Gaps = 4/220 (2%)
Strand=Plus/Plus
Query 1 CTTTACAATCCGAA--GACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGC 58
|||||||| | | | | ||||||| ||| |||||| |||| ||||||| |||||||||
Sbjct 90891 CTTTACAAGCGGCATTGCCCTTCTT-CACTCACGCGATATTG-CTGGATCGGGCTTTCGC 90948
Query 59 CCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCC 118
||||||||||| |||||||||||||||| ||||| |||||| || |||||||||||| ||
Sbjct 90949 CCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCC 91008
Query 119 AGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCT 178
|||||| |||||||||| ||||||| || | ||| | | |||||| |||| ||||||
Sbjct 91009 AGTGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCT 91068
Query 179 CACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGC 218
|||||||| ||||| | || ||||||||| | |||||
Sbjct 91069 GACCAACTACCTAATACTACGCAGGCTCATCAAACAGCGC 91108
>seq8
Length=45569985
Score = 190 bits (210), Expect = 4e-46
Identities = 145/170 (85%), Gaps = 1/170 (1%)
Strand=Plus/Plus
Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88
|||||| ||||| || ||||||||||||| ||||| || ||||| ||||||||||||
Sbjct 15006408 CACGCGACATTG-CTCCATCAGGCTTTCGCGCATTGCGGAAAATTCCTCACTGCTGCCTC 15006466
Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148
|||||||||||||| || ||||||||| |||||||| ||||||||||||| ||||| |
Sbjct 15006467 CCGTAGGAGTCTGGGCCTTGTCTCAGTCCCAGTGTGGATGATCATCCTCTCGGACCAACT 15006526
Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGAC 198
|| |||| | ||||||| ||| ||||||||||||||||||||||| |||
Sbjct 15006527 ACTGATCACCACCTTGGTAAGCTATTACCTCACCAACTAGCTAATCAGAC 15006576
>seq1
Length=52991155
Score = 80.6 bits (88), Expect = 6e-13
Identities = 76/97 (78%), Gaps = 0/97 (0%)
Strand=Plus/Minus
Query 59 CCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCC 118
|||||| || | |||||||||||||||| ||| ||||||| || || |||| | ||
Sbjct 593359 CCATTGCAGAAAACTCCCCACTGCTGCCTCTTGTAAGAGTCTGAGCCTTGCCTCAATCCC 593300
Query 119 AGTGTGACTGATCATCCTCTCAGACCAGTTACGGATC 155
|| || |||||||||||||| |||||| || ||||
Sbjct 593299 AGATTGGCTGATCATCCTCTCGGACCAGCTATTGATC 593263
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1071976555360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |