Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Medicago_20truncatula_20[refseq_20GCF_5F000219495.3_202014-06-18]
2,187 sequences; 412,924,424 total letters
Query= AAMG01001213.1
Length=600
Score E
Sequences producing significant alignments: (Bits) Value
seq2187 266 1e-68
seq10 266 1e-68
seq4 266 1e-68
seq5 239 2e-60
seq41 141 3e-31
seq3 102 3e-19
seq6 84.2 8e-14
seq7 78.8 3e-12
>seq2187
Length=124033
Score = 266 bits (294), Expect = 1e-68
Identities = 345/474 (73%), Gaps = 36/474 (8%)
Strand=Plus/Plus
Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196
||||| ||| || |||||||||||||||||||||| | | ||| || |||| ||||||
Sbjct 22847 GCTGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCAC 22906
Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256
| ||| ||||| |||||| || | |||||||| | ||| ||||||| ||||||| ||
Sbjct 22907 CGCTAACCACAACTCATCCGCTGATTTTTCAACATCAGTCGGTTCGGACCTCCACTTAGT 22966
Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGT-CTTGATC-GTG 314
| ||| |||||| |||| |||||||||||||| | ||||||| | | | | |||
Sbjct 22967 TTCACCTAAGCTTCATCCTGGTCATGGATAGATCACCCAGGTTCGGGTCCATAAGCAGTG 23026
Query 315 CCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTAC--------CCCACACGGG 366
|| ||| ||||||| |||||||||||||||||||| | |||
Sbjct 23027 ACA---ATA-GCCCTATGAAGACTCGCTTTCGCTACGGCTCCGGTGGTTTCCC------- 23075
Query 367 TTAACCTCGCGACACAACGCA-AACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACC 425
|||||| || ||| | | | |||| |||||||||||||| |||||||| |||
Sbjct 23076 TTAACCAAGC--CACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTC--- 23130
Query 426 TGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATT 485
| || | | | |||| || | ||| || | ||||||| || |||||
Sbjct 23131 ---------AGAGCCCCAGCTCCTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATT 23181
Query 486 TCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCA 545
|||||||||| ||||||| ||||||||||||||||||||||||| | | ||||||||||
Sbjct 23182 TCACTCCCCGACAGGGGTTCTTTTCACCTTTCCCTCACGGTACTACTTCACTATCGGTCA 23241
Query 546 CCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599
|| |||||||||||| ||| |||||||| | |||||||||| ||| ||
Sbjct 23242 CCCAGGAGTATTTAGCCTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCA 23295
>seq10
Length=496089
Score = 266 bits (294), Expect = 1e-68
Identities = 345/474 (73%), Gaps = 36/474 (8%)
Strand=Plus/Plus
Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196
||||| ||| || |||||||||||||||||||||| | | ||| || |||| ||||||
Sbjct 184088 GCTGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCAC 184147
Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256
| ||| ||||| |||||| || | |||||||| | ||| ||||||| ||||||| ||
Sbjct 184148 CGCTAACCACAACTCATCCGCTGATTTTTCAACATCAGTCGGTTCGGACCTCCACTTAGT 184207
Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGT-CTTGATC-GTG 314
| ||| |||||| |||| |||||||||||||| | ||||||| | | | | |||
Sbjct 184208 TTCACCTAAGCTTCATCCTGGTCATGGATAGATCACCCAGGTTCGGGTCCATAAGCAGTG 184267
Query 315 CCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTAC--------CCCACACGGG 366
|| ||| ||||||| |||||||||||||||||||| | |||
Sbjct 184268 ACA---ATA-GCCCTATGAAGACTCGCTTTCGCTACGGCTCCGGTGGTTTCCC------- 184316
Query 367 TTAACCTCGCGACACAACGCA-AACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACC 425
|||||| || ||| | | | |||| |||||||||||||| |||||||| |||
Sbjct 184317 TTAACCAAGC--CACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTC--- 184371
Query 426 TGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATT 485
| || | | | |||| || | ||| || | ||||||| || |||||
Sbjct 184372 ---------AGAGCCCCAGCTCCTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATT 184422
Query 486 TCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCA 545
|||||||||| ||||||| ||||||||||||||||||||||||| | | ||||||||||
Sbjct 184423 TCACTCCCCGACAGGGGTTCTTTTCACCTTTCCCTCACGGTACTACTTCACTATCGGTCA 184482
Query 546 CCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599
|| |||||||||||| ||| |||||||| | |||||||||| ||| ||
Sbjct 184483 CCCAGGAGTATTTAGCCTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCA 184536
>seq4
Length=56582383
Score = 266 bits (294), Expect = 1e-68
Identities = 345/474 (73%), Gaps = 36/474 (8%)
Strand=Plus/Minus
Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196
||||| ||| || |||||||||||||||||||||| | | ||| || |||| ||||||
Sbjct 493428 GCTGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCAC 493369
Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256
| ||| ||||| |||||| || | |||||||| | ||| ||||||| ||||||| ||
Sbjct 493368 CGCTAACCACAACTCATCCGCTGATTTTTCAACATCAGTCGGTTCGGACCTCCACTTAGT 493309
Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGT-CTTGATC-GTG 314
| ||| |||||| |||| |||||||||||||| | ||||||| | | | | |||
Sbjct 493308 TTCACCTAAGCTTCATCCTGGTCATGGATAGATCACCCAGGTTCGGGTCCATAAGCAGTG 493249
Query 315 CCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTAC--------CCCACACGGG 366
|| ||| ||||||| |||||||||||||||||||| | |||
Sbjct 493248 ACA---ATA-GCCCTATGAAGACTCGCTTTCGCTACGGCTCCGGTGGTTTCCC------- 493200
Query 367 TTAACCTCGCGACACAACGCA-AACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACC 425
|||||| || ||| | | | |||| |||||||||||||| |||||||| |||
Sbjct 493199 TTAACCAAGC--CACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTC--- 493145
Query 426 TGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATT 485
| || | | | |||| || | ||| || | ||||||| || |||||
Sbjct 493144 ---------AGAGCCCCAGCTCCTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATT 493094
Query 486 TCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCA 545
|||||||||| ||||||| ||||||||||||||||||||||||| | | ||||||||||
Sbjct 493093 TCACTCCCCGACAGGGGTTCTTTTCACCTTTCCCTCACGGTACTACTTCACTATCGGTCA 493034
Query 546 CCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599
|| |||||||||||| ||| |||||||| | |||||||||| ||| ||
Sbjct 493033 CCCAGGAGTATTTAGCCTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCA 492980
Score = 260 bits (288), Expect = 5e-67
Identities = 344/474 (73%), Gaps = 36/474 (8%)
Strand=Plus/Minus
Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196
||||| ||| || |||||||||||||||||||||| | | ||| || |||| ||||||
Sbjct 18191089 GCTGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCAC 18191030
Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256
| ||| ||||| |||||| || | |||||||| | ||| ||||||| ||||||| ||
Sbjct 18191029 CGCTAACCACAACTCATCCGCTGATTTTTCAACATCAGTCGGTTCGGACCTCCACTTAGT 18190970
Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGT-CTTGATC-GTG 314
| ||| |||||| |||| |||||||||||||| | ||||||| | | | | |||
Sbjct 18190969 TTCACCTAAGCTTCATCCTGGTCATGGATAGATCACCCAGGTTCGGGTCCATAAGCAGTG 18190910
Query 315 CCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTAC--------CCCACACGGG 366
|| ||| ||||||| |||||||||||||||||||| | |||
Sbjct 18190909 ACA---ATA-GCCCTATGAAGACTCGCTTTCGCTACGGCTCCGGTGGTTTCCC------- 18190861
Query 367 TTAACCTCGCGACACAACGCA-AACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACC 425
|||||| || ||| | | | |||| |||||||||||||| |||||||| |||
Sbjct 18190860 TTAACCAAGC--CACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTC--- 18190806
Query 426 TGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATT 485
| || | | | |||| || | ||| || | ||||||| || |||||
Sbjct 18190805 ---------AGAGCCCCAGCTCCTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATT 18190755
Query 486 TCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCA 545
|||||||||| ||||||| ||||||||||||||||||||||||| | | |||||| |||
Sbjct 18190754 TCACTCCCCGACAGGGGTTCTTTTCACCTTTCCCTCACGGTACTACTTCACTATCGATCA 18190695
Query 546 CCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599
|| |||||||||||| ||| |||||||| | |||||||||| ||| ||
Sbjct 18190694 CCCAGGAGTATTTAGCCTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCA 18190641
Score = 105 bits (116), Expect = 2e-20
Identities = 91/113 (81%), Gaps = 0/113 (0%)
Strand=Plus/Plus
Query 139 TGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCC 198
||| ||| || |||||||||||||||||||||| | | |||||| |||| |||||||
Sbjct 50182919 TGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTCTGGGTTTGAGTGGCATTTCACCG 50182978
Query 199 CTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCAC 251
||||||||| |||||| | | |||||||| | ||| |||| || |||||||
Sbjct 50182979 CTATCCACAACTCATCCGTTGATTTTTCAACTTCAGTCGGTTTGGACCTCCAC 50183031
>seq5
Length=43630510
Score = 239 bits (264), Expect = 2e-60
Identities = 339/474 (72%), Gaps = 36/474 (8%)
Strand=Plus/Minus
Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196
|||| ||| || |||||| | ||||||||||||| | | ||| || |||| ||||||
Sbjct 34656696 GCTGTGCCTCAACGCATTTTGAGGAGAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCAC 34656637
Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256
| ||| |||| |||||| || | |||||||| | ||| ||||||| ||||||| ||
Sbjct 34656636 CGCTAATCACAATTCATCCGCTGATTTTTCAACATCAGTCGGTTCGGACCTCCACTTAGT 34656577
Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTCT-TGATC-GTG 314
| || |||||| |||| |||||||||||||| | |||||||| | | | |||
Sbjct 34656576 TTCGCCTAAGCTTCATCCTGGTCATGGATAGATCACCCAGGTTCGGGTCCATAAGCAGTG 34656517
Query 315 CCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTAC--------CCCACACGGG 366
|| ||| ||||||| |||||||||||||||||||| | |||
Sbjct 34656516 ACA---ATA-GCCCTATGAAGACTCGCTTTCGCTACGGCTCCGGTGGTTTCCC------- 34656468
Query 367 TTAACCTCGCGACACAACGCAA-ACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACC 425
|||||| || ||| | | | |||| ||||||||||||| |||||||| ||||
Sbjct 34656467 TTAACCAAGC--CACTGCCTATGAGTCGCCCGCTCATTCTTCAACAGGCACGCGGTCAG- 34656411
Query 426 TGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATT 485
|| | | | |||| || | ||| || | ||||||| || |||||
Sbjct 34656410 -----------AGCCCCAGCTCCTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATT 34656362
Query 486 TCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCA 545
|||||||||| ||||||| ||||||||||||||||||||||||| | | ||||||||||
Sbjct 34656361 TCACTCCCCGACAGGGGTTCTTTTCACCTTTCCCTCACGGTACTACTTCACTATCGGTCA 34656302
Query 546 CCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599
|| |||||||||||| ||| |||||||| | |||||||||| ||| ||
Sbjct 34656301 CCCAGGAGTATTTAGCCTTGCAAGGTGGTCCTTGCTGATTCACACGGCATTCCA 34656248
>seq41
Length=124265
Score = 141 bits (156), Expect = 3e-31
Identities = 165/220 (75%), Gaps = 2/220 (1%)
Strand=Plus/Minus
Query 88 GGGCC-CCCTAGACCATCCAGTGCTCTACCTCCGGGAAGAAACACGCGACGCTGCACCTA 146
||||| |||||| |||| ||||||||||||| || | ||| ||||| || |
Sbjct 6527 GGGCCACCCTAGCCCATTGAGTGCTCTACCTCGGGCCATCGACATCATACGCTCTACTGA 6468
Query 147 AATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCAC 206
||| |||||| ||| |||||||||| | | ||| ||||||||||||||||| ||||
Sbjct 6467 AATAGATTTCGCGGAAAACCAGCTATATCCGATCTTGGTTGGCCTTTCACCCCTAGCCAC 6408
Query 207 AGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTA-CCCGC 265
| ||||||||| | ||| | || || ||||||||||||||||| | | ||| | |
Sbjct 6407 AAGTCATCCCCGTATTTTGCCACATACGTGGGTTCGGTCCTCCAAGGCCTGTTAGAGCTC 6348
Query 266 GCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTC 305
||||||||||| ||||| |||||| | | ||||||||
Sbjct 6347 TCTTCAACCTGCTCATGGCTAGATCGATCGGTTTCGGGTC 6308
Score = 111 bits (122), Expect = 6e-22
Identities = 115/148 (78%), Gaps = 6/148 (4%)
Strand=Plus/Minus
Query 435 AAAGGCACTTCAGCTCC---GACGGATTGTAGGCACATGGTTTCAGGTACT--ATTTCAC 489
|||||| || |||||| ||| |||||| ||| | | |||||| || ||| |||
Sbjct 6166 AAAGGCTCTA-AGCTCCTTCGACTGATTGTTCGCATCGGATCTCAGGTTCTCTATTGCAC 6108
Query 490 TCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAA 549
|||| |||| |||||||||||||||||||||||||||| |||||||||||| |
Sbjct 6107 TCCCTAAATAGGGTTCTTTTCACCTTTCCCTCACGGTACTTGTACGCTATCGGTCATTGA 6048
Query 550 GGAGTATTTAGGCTTAACGGGTGGTCCC 577
||| || ||||||||| ||||||||||
Sbjct 6047 GGAATACTTAGGCTTAGAGGGTGGTCCC 6020
>seq3
Length=55515152
Score = 102 bits (112), Expect = 3e-19
Identities = 91/114 (80%), Gaps = 0/114 (0%)
Strand=Plus/Minus
Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196
||||| ||| || ||||||| |||||||||||||| | | ||| || |||| ||||||
Sbjct 16006348 GCTGCGCCTCAACGCATTTCAGGGAGAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCAC 16006289
Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCA 250
| ||| ||||| |||||| || | |||||||| | ||| ||||||| ||||||
Sbjct 16006288 CGCTAACCACAACTCATCCGCTGATTTTTCAACATCAGTCGGTTCGGACCTCCA 16006235
>seq6
Length=35275713
Score = 84.2 bits (92), Expect = 8e-14
Identities = 79/101 (78%), Gaps = 0/101 (0%)
Strand=Plus/Minus
Query 499 GGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTT 558
||||| |||||||||||||| |||| ||||| | | |||||||||||| || | |||||
Sbjct 32730974 GGGGTTCTTTTCACCTTTCCGTCACAGTACTACTTCACTATCGGTCACCCAGAAATATTT 32730915
Query 559 AGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599
|| ||| |||||| | | ||||||||||| ||| ||
Sbjct 32730914 AGCCTTGCGAGGTGGTACTTGCTGATTCACACGAGATTCCA 32730874
>seq7
Length=49172423
Score = 78.8 bits (86), Expect = 3e-12
Identities = 75/95 (79%), Gaps = 2/95 (2%)
Strand=Plus/Minus
Query 453 ACGGATTGTAGGCACATGGTTTCAGGTACT--ATTTCACTCCCCGCCAGGGGTACTTTTC 510
|| |||||| ||| | | |||||| || ||| ||||||| |||| ||||||
Sbjct 9221494 ACTGATTGTTCGCATCGGATCTCAGGTTCTCTATTGCACTCCCTAAATAGGGTTCTTTTC 9221435
Query 511 ACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCA 545
|||||||||||||||||||||| ||||||||||||
Sbjct 9221434 ACCTTTCCCTCACGGTACTTGTACGCTATCGGTCA 9221400
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1817560249088
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