Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Medicago_20truncatula_20[refseq_20GCF_5F000219495.3_202014-06-18] 2,187 sequences; 412,924,424 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq2187 266 1e-68 seq10 266 1e-68 seq4 266 1e-68 seq5 239 2e-60 seq41 141 3e-31 seq3 102 3e-19 seq6 84.2 8e-14 seq7 78.8 3e-12 >seq2187 Length=124033 Score = 266 bits (294), Expect = 1e-68 Identities = 345/474 (73%), Gaps = 36/474 (8%) Strand=Plus/Plus Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196 ||||| ||| || |||||||||||||||||||||| | | ||| || |||| |||||| Sbjct 22847 GCTGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCAC 22906 Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256 | ||| ||||| |||||| || | |||||||| | ||| ||||||| ||||||| || Sbjct 22907 CGCTAACCACAACTCATCCGCTGATTTTTCAACATCAGTCGGTTCGGACCTCCACTTAGT 22966 Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGT-CTTGATC-GTG 314 | ||| |||||| |||| |||||||||||||| | ||||||| | | | | ||| Sbjct 22967 TTCACCTAAGCTTCATCCTGGTCATGGATAGATCACCCAGGTTCGGGTCCATAAGCAGTG 23026 Query 315 CCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTAC--------CCCACACGGG 366 || ||| ||||||| |||||||||||||||||||| | ||| Sbjct 23027 ACA---ATA-GCCCTATGAAGACTCGCTTTCGCTACGGCTCCGGTGGTTTCCC------- 23075 Query 367 TTAACCTCGCGACACAACGCA-AACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACC 425 |||||| || ||| | | | |||| |||||||||||||| |||||||| ||| Sbjct 23076 TTAACCAAGC--CACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTC--- 23130 Query 426 TGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATT 485 | || | | | |||| || | ||| || | ||||||| || ||||| Sbjct 23131 ---------AGAGCCCCAGCTCCTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATT 23181 Query 486 TCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCA 545 |||||||||| ||||||| ||||||||||||||||||||||||| | | |||||||||| Sbjct 23182 TCACTCCCCGACAGGGGTTCTTTTCACCTTTCCCTCACGGTACTACTTCACTATCGGTCA 23241 Query 546 CCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599 || |||||||||||| ||| |||||||| | |||||||||| ||| || Sbjct 23242 CCCAGGAGTATTTAGCCTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCA 23295 >seq10 Length=496089 Score = 266 bits (294), Expect = 1e-68 Identities = 345/474 (73%), Gaps = 36/474 (8%) Strand=Plus/Plus Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196 ||||| ||| || |||||||||||||||||||||| | | ||| || |||| |||||| Sbjct 184088 GCTGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCAC 184147 Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256 | ||| ||||| |||||| || | |||||||| | ||| ||||||| ||||||| || Sbjct 184148 CGCTAACCACAACTCATCCGCTGATTTTTCAACATCAGTCGGTTCGGACCTCCACTTAGT 184207 Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGT-CTTGATC-GTG 314 | ||| |||||| |||| |||||||||||||| | ||||||| | | | | ||| Sbjct 184208 TTCACCTAAGCTTCATCCTGGTCATGGATAGATCACCCAGGTTCGGGTCCATAAGCAGTG 184267 Query 315 CCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTAC--------CCCACACGGG 366 || ||| ||||||| |||||||||||||||||||| | ||| Sbjct 184268 ACA---ATA-GCCCTATGAAGACTCGCTTTCGCTACGGCTCCGGTGGTTTCCC------- 184316 Query 367 TTAACCTCGCGACACAACGCA-AACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACC 425 |||||| || ||| | | | |||| |||||||||||||| |||||||| ||| Sbjct 184317 TTAACCAAGC--CACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTC--- 184371 Query 426 TGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATT 485 | || | | | |||| || | ||| || | ||||||| || ||||| Sbjct 184372 ---------AGAGCCCCAGCTCCTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATT 184422 Query 486 TCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCA 545 |||||||||| ||||||| ||||||||||||||||||||||||| | | |||||||||| Sbjct 184423 TCACTCCCCGACAGGGGTTCTTTTCACCTTTCCCTCACGGTACTACTTCACTATCGGTCA 184482 Query 546 CCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599 || |||||||||||| ||| |||||||| | |||||||||| ||| || Sbjct 184483 CCCAGGAGTATTTAGCCTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCA 184536 >seq4 Length=56582383 Score = 266 bits (294), Expect = 1e-68 Identities = 345/474 (73%), Gaps = 36/474 (8%) Strand=Plus/Minus Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196 ||||| ||| || |||||||||||||||||||||| | | ||| || |||| |||||| Sbjct 493428 GCTGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCAC 493369 Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256 | ||| ||||| |||||| || | |||||||| | ||| ||||||| ||||||| || Sbjct 493368 CGCTAACCACAACTCATCCGCTGATTTTTCAACATCAGTCGGTTCGGACCTCCACTTAGT 493309 Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGT-CTTGATC-GTG 314 | ||| |||||| |||| |||||||||||||| | ||||||| | | | | ||| Sbjct 493308 TTCACCTAAGCTTCATCCTGGTCATGGATAGATCACCCAGGTTCGGGTCCATAAGCAGTG 493249 Query 315 CCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTAC--------CCCACACGGG 366 || ||| ||||||| |||||||||||||||||||| | ||| Sbjct 493248 ACA---ATA-GCCCTATGAAGACTCGCTTTCGCTACGGCTCCGGTGGTTTCCC------- 493200 Query 367 TTAACCTCGCGACACAACGCA-AACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACC 425 |||||| || ||| | | | |||| |||||||||||||| |||||||| ||| Sbjct 493199 TTAACCAAGC--CACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTC--- 493145 Query 426 TGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATT 485 | || | | | |||| || | ||| || | ||||||| || ||||| Sbjct 493144 ---------AGAGCCCCAGCTCCTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATT 493094 Query 486 TCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCA 545 |||||||||| ||||||| ||||||||||||||||||||||||| | | |||||||||| Sbjct 493093 TCACTCCCCGACAGGGGTTCTTTTCACCTTTCCCTCACGGTACTACTTCACTATCGGTCA 493034 Query 546 CCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599 || |||||||||||| ||| |||||||| | |||||||||| ||| || Sbjct 493033 CCCAGGAGTATTTAGCCTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCA 492980 Score = 260 bits (288), Expect = 5e-67 Identities = 344/474 (73%), Gaps = 36/474 (8%) Strand=Plus/Minus Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196 ||||| ||| || |||||||||||||||||||||| | | ||| || |||| |||||| Sbjct 18191089 GCTGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCAC 18191030 Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256 | ||| ||||| |||||| || | |||||||| | ||| ||||||| ||||||| || Sbjct 18191029 CGCTAACCACAACTCATCCGCTGATTTTTCAACATCAGTCGGTTCGGACCTCCACTTAGT 18190970 Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGT-CTTGATC-GTG 314 | ||| |||||| |||| |||||||||||||| | ||||||| | | | | ||| Sbjct 18190969 TTCACCTAAGCTTCATCCTGGTCATGGATAGATCACCCAGGTTCGGGTCCATAAGCAGTG 18190910 Query 315 CCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTAC--------CCCACACGGG 366 || ||| ||||||| |||||||||||||||||||| | ||| Sbjct 18190909 ACA---ATA-GCCCTATGAAGACTCGCTTTCGCTACGGCTCCGGTGGTTTCCC------- 18190861 Query 367 TTAACCTCGCGACACAACGCA-AACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACC 425 |||||| || ||| | | | |||| |||||||||||||| |||||||| ||| Sbjct 18190860 TTAACCAAGC--CACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTC--- 18190806 Query 426 TGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATT 485 | || | | | |||| || | ||| || | ||||||| || ||||| Sbjct 18190805 ---------AGAGCCCCAGCTCCTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATT 18190755 Query 486 TCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCA 545 |||||||||| ||||||| ||||||||||||||||||||||||| | | |||||| ||| Sbjct 18190754 TCACTCCCCGACAGGGGTTCTTTTCACCTTTCCCTCACGGTACTACTTCACTATCGATCA 18190695 Query 546 CCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599 || |||||||||||| ||| |||||||| | |||||||||| ||| || Sbjct 18190694 CCCAGGAGTATTTAGCCTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCA 18190641 Score = 105 bits (116), Expect = 2e-20 Identities = 91/113 (81%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 139 TGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCC 198 ||| ||| || |||||||||||||||||||||| | | |||||| |||| ||||||| Sbjct 50182919 TGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTCTGGGTTTGAGTGGCATTTCACCG 50182978 Query 199 CTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCAC 251 ||||||||| |||||| | | |||||||| | ||| |||| || ||||||| Sbjct 50182979 CTATCCACAACTCATCCGTTGATTTTTCAACTTCAGTCGGTTTGGACCTCCAC 50183031 >seq5 Length=43630510 Score = 239 bits (264), Expect = 2e-60 Identities = 339/474 (72%), Gaps = 36/474 (8%) Strand=Plus/Minus Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196 |||| ||| || |||||| | ||||||||||||| | | ||| || |||| |||||| Sbjct 34656696 GCTGTGCCTCAACGCATTTTGAGGAGAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCAC 34656637 Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256 | ||| |||| |||||| || | |||||||| | ||| ||||||| ||||||| || Sbjct 34656636 CGCTAATCACAATTCATCCGCTGATTTTTCAACATCAGTCGGTTCGGACCTCCACTTAGT 34656577 Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTCT-TGATC-GTG 314 | || |||||| |||| |||||||||||||| | |||||||| | | | ||| Sbjct 34656576 TTCGCCTAAGCTTCATCCTGGTCATGGATAGATCACCCAGGTTCGGGTCCATAAGCAGTG 34656517 Query 315 CCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTAC--------CCCACACGGG 366 || ||| ||||||| |||||||||||||||||||| | ||| Sbjct 34656516 ACA---ATA-GCCCTATGAAGACTCGCTTTCGCTACGGCTCCGGTGGTTTCCC------- 34656468 Query 367 TTAACCTCGCGACACAACGCAA-ACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACC 425 |||||| || ||| | | | |||| ||||||||||||| |||||||| |||| Sbjct 34656467 TTAACCAAGC--CACTGCCTATGAGTCGCCCGCTCATTCTTCAACAGGCACGCGGTCAG- 34656411 Query 426 TGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATT 485 || | | | |||| || | ||| || | ||||||| || ||||| Sbjct 34656410 -----------AGCCCCAGCTCCTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATT 34656362 Query 486 TCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCA 545 |||||||||| ||||||| ||||||||||||||||||||||||| | | |||||||||| Sbjct 34656361 TCACTCCCCGACAGGGGTTCTTTTCACCTTTCCCTCACGGTACTACTTCACTATCGGTCA 34656302 Query 546 CCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599 || |||||||||||| ||| |||||||| | |||||||||| ||| || Sbjct 34656301 CCCAGGAGTATTTAGCCTTGCAAGGTGGTCCTTGCTGATTCACACGGCATTCCA 34656248 >seq41 Length=124265 Score = 141 bits (156), Expect = 3e-31 Identities = 165/220 (75%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 88 GGGCC-CCCTAGACCATCCAGTGCTCTACCTCCGGGAAGAAACACGCGACGCTGCACCTA 146 ||||| |||||| |||| ||||||||||||| || | ||| ||||| || | Sbjct 6527 GGGCCACCCTAGCCCATTGAGTGCTCTACCTCGGGCCATCGACATCATACGCTCTACTGA 6468 Query 147 AATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCAC 206 ||| |||||| ||| |||||||||| | | ||| ||||||||||||||||| |||| Sbjct 6467 AATAGATTTCGCGGAAAACCAGCTATATCCGATCTTGGTTGGCCTTTCACCCCTAGCCAC 6408 Query 207 AGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTA-CCCGC 265 | ||||||||| | ||| | || || ||||||||||||||||| | | ||| | | Sbjct 6407 AAGTCATCCCCGTATTTTGCCACATACGTGGGTTCGGTCCTCCAAGGCCTGTTAGAGCTC 6348 Query 266 GCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTC 305 ||||||||||| ||||| |||||| | | |||||||| Sbjct 6347 TCTTCAACCTGCTCATGGCTAGATCGATCGGTTTCGGGTC 6308 Score = 111 bits (122), Expect = 6e-22 Identities = 115/148 (78%), Gaps = 6/148 (4%) Strand=Plus/Minus Query 435 AAAGGCACTTCAGCTCC---GACGGATTGTAGGCACATGGTTTCAGGTACT--ATTTCAC 489 |||||| || |||||| ||| |||||| ||| | | |||||| || ||| ||| Sbjct 6166 AAAGGCTCTA-AGCTCCTTCGACTGATTGTTCGCATCGGATCTCAGGTTCTCTATTGCAC 6108 Query 490 TCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAA 549 |||| |||| |||||||||||||||||||||||||||| |||||||||||| | Sbjct 6107 TCCCTAAATAGGGTTCTTTTCACCTTTCCCTCACGGTACTTGTACGCTATCGGTCATTGA 6048 Query 550 GGAGTATTTAGGCTTAACGGGTGGTCCC 577 ||| || ||||||||| |||||||||| Sbjct 6047 GGAATACTTAGGCTTAGAGGGTGGTCCC 6020 >seq3 Length=55515152 Score = 102 bits (112), Expect = 3e-19 Identities = 91/114 (80%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196 ||||| ||| || ||||||| |||||||||||||| | | ||| || |||| |||||| Sbjct 16006348 GCTGCGCCTCAACGCATTTCAGGGAGAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCAC 16006289 Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCA 250 | ||| ||||| |||||| || | |||||||| | ||| ||||||| |||||| Sbjct 16006288 CGCTAACCACAACTCATCCGCTGATTTTTCAACATCAGTCGGTTCGGACCTCCA 16006235 >seq6 Length=35275713 Score = 84.2 bits (92), Expect = 8e-14 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 499 GGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTT 558 ||||| |||||||||||||| |||| ||||| | | |||||||||||| || | ||||| Sbjct 32730974 GGGGTTCTTTTCACCTTTCCGTCACAGTACTACTTCACTATCGGTCACCCAGAAATATTT 32730915 Query 559 AGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599 || ||| |||||| | | ||||||||||| ||| || Sbjct 32730914 AGCCTTGCGAGGTGGTACTTGCTGATTCACACGAGATTCCA 32730874 >seq7 Length=49172423 Score = 78.8 bits (86), Expect = 3e-12 Identities = 75/95 (79%), Gaps = 2/95 (2%) Strand=Plus/Minus Query 453 ACGGATTGTAGGCACATGGTTTCAGGTACT--ATTTCACTCCCCGCCAGGGGTACTTTTC 510 || |||||| ||| | | |||||| || ||| ||||||| |||| |||||| Sbjct 9221494 ACTGATTGTTCGCATCGGATCTCAGGTTCTCTATTGCACTCCCTAAATAGGGTTCTTTTC 9221435 Query 511 ACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCA 545 |||||||||||||||||||||| |||||||||||| Sbjct 9221434 ACCTTTCCCTCACGGTACTTGTACGCTATCGGTCA 9221400 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817560249088