Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Medicago_20truncatula_20[refseq_20GCF_5F000219495.3_202014-06-18] 2,187 sequences; 412,924,424 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq2187 214 4e-53 seq10 214 4e-53 seq4 214 4e-53 seq5 178 3e-42 seq41 167 5e-39 >seq2187 Length=124033 Score = 214 bits (236), Expect = 4e-53 Identities = 301/408 (74%), Gaps = 16/408 (4%) Strand=Plus/Plus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||||| ||||||| |||||| || ||||||||| | ||| ||| | | Sbjct 22307 CGACTACGCCTTTCGGCCTGATCTTAGGCCCTGACTCACCCTCCGTGGACGAACCTTGCG 22366 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119 ||||||||| | | |||| | | |||||| |||| | || |||||| ||| Sbjct 22367 GAGGAACCCTTAGGTTTTCGGGGCATTGGATTCTCACCAATGTTTGCGTTACTCAAGCCG 22426 Query 120 GCATTCTCACT--CGCATCAACTCCACCACACAG-TCACCCGGCAGCTTCACCACTGACA 176 ||||||| || ||| || |||| || | | || | ||| |||| || | Sbjct 22427 ACATTCTCGCTTCCGCTTCG--TCCA--ACCCTGCTCGCGCGGGTACTTCGTT-CTAAGG 22481 Query 177 CG--ACGCTCCCCTACCCAACCACACAG-GTTGCCACAGCTTCGGCGGATAACTTAAGCC 233 || ||||||||||||| | || | | ||||||||||||| ||| |||| ||| Sbjct 22482 CGGAACGCTCCCCTACCGATTCATTTTTAGATCCCACAGCTTCGGCAGATCGCTTA-GCC 22540 Query 234 CCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGA 293 ||| | ||| ||||||| | | || || |||||||||||||||||||||||||||| Sbjct 22541 CCGTT-CATCTTCGGCGCAAGAGCGCTCGATCAGTGAGCTATTACGCACTCTTTCAAGGG 22599 Query 294 TGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCC-ACATCCTTTCCCACTGA 352 |||||||||| | || |||||||||| ||||| || ||||| || |||||| |||||| Sbjct 22600 TGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTCTGC-ACTCCTACCTCCTTTATCACTGA 22658 Query 353 GTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 | | || |||||||||||||||| ||||||||||||||||||||||| Sbjct 22659 GCGATCATTTAGGGGCCTTAGCTGGTGATCTGGGCTGTTTCCCTCTCG 22706 >seq10 Length=496089 Score = 214 bits (236), Expect = 4e-53 Identities = 301/408 (74%), Gaps = 16/408 (4%) Strand=Plus/Plus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||||| ||||||| |||||| || ||||||||| | ||| ||| | | Sbjct 183548 CGACTACGCCTTTCGGCCTGATCTTAGGCCCTGACTCACCCTCCGTGGACGAACCTTGCG 183607 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119 ||||||||| | | |||| | | |||||| |||| | || |||||| ||| Sbjct 183608 GAGGAACCCTTAGGTTTTCGGGGCATTGGATTCTCACCAATGTTTGCGTTACTCAAGCCG 183667 Query 120 GCATTCTCACT--CGCATCAACTCCACCACACAG-TCACCCGGCAGCTTCACCACTGACA 176 ||||||| || ||| || |||| || | | || | ||| |||| || | Sbjct 183668 ACATTCTCGCTTCCGCTTCG--TCCA--ACCCTGCTCGCGCGGGTACTTCGTT-CTAAGG 183722 Query 177 CG--ACGCTCCCCTACCCAACCACACAG-GTTGCCACAGCTTCGGCGGATAACTTAAGCC 233 || ||||||||||||| | || | | ||||||||||||| ||| |||| ||| Sbjct 183723 CGGAACGCTCCCCTACCGATTCATTTTTAGATCCCACAGCTTCGGCAGATCGCTTA-GCC 183781 Query 234 CCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGA 293 ||| | ||| ||||||| | | || || |||||||||||||||||||||||||||| Sbjct 183782 CCGTT-CATCTTCGGCGCAAGAGCGCTCGATCAGTGAGCTATTACGCACTCTTTCAAGGG 183840 Query 294 TGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCC-ACATCCTTTCCCACTGA 352 |||||||||| | || |||||||||| ||||| || ||||| || |||||| |||||| Sbjct 183841 TGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTCTGC-ACTCCTACCTCCTTTATCACTGA 183899 Query 353 GTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 | | || |||||||||||||||| ||||||||||||||||||||||| Sbjct 183900 GCGATCATTTAGGGGCCTTAGCTGGTGATCTGGGCTGTTTCCCTCTCG 183947 >seq4 Length=56582383 Score = 214 bits (236), Expect = 4e-53 Identities = 301/408 (74%), Gaps = 16/408 (4%) Strand=Plus/Minus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||||| ||||||| |||||| || ||||||||| | ||| ||| | | Sbjct 493968 CGACTACGCCTTTCGGCCTGATCTTAGGCCCTGACTCACCCTCCGTGGACGAACCTTGCG 493909 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119 ||||||||| | | |||| | | |||||| |||| | || |||||| ||| Sbjct 493908 GAGGAACCCTTAGGTTTTCGGGGCATTGGATTCTCACCAATGTTTGCGTTACTCAAGCCG 493849 Query 120 GCATTCTCACT--CGCATCAACTCCACCACACAG-TCACCCGGCAGCTTCACCACTGACA 176 ||||||| || ||| || |||| || | | || | ||| |||| || | Sbjct 493848 ACATTCTCGCTTCCGCTTCG--TCCA--ACCCTGCTCGCGCGGGTACTTCGTT-CTAAGG 493794 Query 177 CG--ACGCTCCCCTACCCAACCACACAG-GTTGCCACAGCTTCGGCGGATAACTTAAGCC 233 || ||||||||||||| | || | | ||||||||||||| ||| |||| ||| Sbjct 493793 CGGAACGCTCCCCTACCGATTCATTTTTAGATCCCACAGCTTCGGCAGATCGCTTA-GCC 493735 Query 234 CCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGA 293 ||| | ||| ||||||| | | || || |||||||||||||||||||||||||||| Sbjct 493734 CCGTT-CATCTTCGGCGCAAGAGCGCTCGATCAGTGAGCTATTACGCACTCTTTCAAGGG 493676 Query 294 TGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCC-ACATCCTTTCCCACTGA 352 |||||||||| | || |||||||||| ||||| ||| |||| || |||||| |||||| Sbjct 493675 TGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTCTGCA-CTCCTACCTCCTTTATCACTGA 493617 Query 353 GTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 | | || |||||||||||||||| ||||||||||||||||||||||| Sbjct 493616 GCGATCATTTAGGGGCCTTAGCTGGTGATCTGGGCTGTTTCCCTCTCG 493569 Score = 214 bits (236), Expect = 4e-53 Identities = 301/408 (74%), Gaps = 16/408 (4%) Strand=Plus/Minus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||||| ||||||| |||||| || ||||||||| | ||| ||| | | Sbjct 18191629 CGACTACGCCTTTCGGCCTGATCTTAGGCCCTGACTCACCCTCCGTGGACGAACCTTGCG 18191570 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119 ||||||||| | | |||| | | |||||| |||| | || |||||| ||| Sbjct 18191569 GAGGAACCCTTAGGTTTTCGGGGCATTGGATTCTCACCAATGTTTGCGTTACTCAAGCCG 18191510 Query 120 GCATTCTCACT--CGCATCAACTCCACCACACAG-TCACCCGGCAGCTTCACCACTGACA 176 ||||||| || ||| || |||| || | | || | ||| |||| || | Sbjct 18191509 ACATTCTCGCTTCCGCTTCG--TCCA--ACCCTGCTCGCGCGGGTACTTCGTT-CTAAGG 18191455 Query 177 CG--ACGCTCCCCTACCCAACCACACAG-GTTGCCACAGCTTCGGCGGATAACTTAAGCC 233 || ||||||||||||| | || | | ||||||||||||| ||| |||| ||| Sbjct 18191454 CGGAACGCTCCCCTACCGATTCATTTTTAGATCCCACAGCTTCGGCAGATCGCTTA-GCC 18191396 Query 234 CCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGA 293 ||| | ||| ||||||| | | || || |||||||||||||||||||||||||||| Sbjct 18191395 CCGTT-CATCTTCGGCGCAAGAGCGCTCGATCAGTGAGCTATTACGCACTCTTTCAAGGG 18191337 Query 294 TGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCC-ACATCCTTTCCCACTGA 352 |||||||||| | || |||||||||| ||||| ||| |||| || |||||| |||||| Sbjct 18191336 TGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTCTGCA-CTCCTACCTCCTTTATCACTGA 18191278 Query 353 GTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 | | || |||||||||||||||| ||||||||||||||||||||||| Sbjct 18191277 GCGATCATTTAGGGGCCTTAGCTGGTGATCTGGGCTGTTTCCCTCTCG 18191230 >seq5 Length=43630510 Score = 178 bits (196), Expect = 3e-42 Identities = 287/399 (72%), Gaps = 14/399 (4%) Strand=Plus/Minus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 |||||||||| ||||||| |||||| || ||||||||| | ||| ||| | | Sbjct 34658967 CGACTACGCCATTCGGCCTGATCTTAGGCCCTGACTCACCCTCTGTGGACGAACCTTGCG 34658908 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119 ||||||||| | | |||| | | |||||| |||| | || |||||| ||| Sbjct 34658907 GAGGAACCCTTAGGTTTTCGGGGCATTGGATTCTCACCAATGTTTGCGTTACTCAAGCCG 34658848 Query 120 GCATTCTCACT--CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACAC 177 ||||||| || ||| || |||| || || | ||| |||| || | | Sbjct 34658847 ACATTCTCGCTTCCGCTTCG--TCCAA-ACCTGCTCGCGCGGGTACTTCGTT-CTAAGGC 34658792 Query 178 G--ACGCTCCCCTACCCAACCACACAG-GTTGCCACAGCTTCGGCGGATAACTTAAGCCC 234 | || |||||||||| | || | | ||||||||| ||| ||| |||| |||| Sbjct 34658791 GGAACTCTCCCCTACCGATTCATTTTTAGATCCCACAGCTTTGGCAGATCGCTTA-GCCC 34658733 Query 235 CGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGAT 294 || | ||| |||||||| | | || || ||||||||||||| |||||||||||||| | Sbjct 34658732 CGTT-CATCTTCGGCGCGAGAGCGCTCGATCAGTGAGCTATTATGCACTCTTTCAAGGGT 34658674 Query 295 GGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCC-ACATCCTTTCCCACTGAG 353 ||||||||| | || |||||||||| ||||| ||| |||| || |||||| |||||| Sbjct 34658673 GGCTGCTTCTAGGCAAACCTCCTGGCTGTCTCTGCA-CTCCTACCTCCTTTATCACTGAA 34658615 Query 354 TCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTT 392 | || |||||||||||||||| ||||||||||||||| Sbjct 34658614 CGATCATTTAGGGGCCTTAGCTGGTGATCTGGGCTGTTT 34658576 >seq41 Length=124265 Score = 167 bits (184), Expect = 5e-39 Identities = 153/192 (80%), Gaps = 6/192 (3%) Strand=Plus/Minus Query 212 GCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGC---GGAATCACTTGACCAGT 268 ||||||| | || |||| ||||| | |||||| |||| || ||| || ||||||| Sbjct 6804 GCTTCGGTGAATCACTTGAGCCCTGATACATTTTCGGTGCCATGGAG---CTAGACCAGT 6748 Query 269 GAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACG 328 |||||||||||| |||| ||||||||||||||||||||| |||||||||||||| || Sbjct 6747 GAGCTATTACGCTTTCTTCAAAGGATGGCTGCTTCCAAGCCCACCTCCTGGTTGTCATCG 6688 Query 329 CAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCT 388 | ||| |||||| ||||| ||| | ||||||| ||||||| | |||||||||| Sbjct 6687 CTCGATCACTTCCTTTTCCACTAAGTGATTGCTTAGGGACCTTAGCGTACGATCTGGGCT 6628 Query 389 GTTTCCCTCTCG 400 |||||||||||| Sbjct 6627 GTTTCCCTCTCG 6616 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177574245888