Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Medicago_20truncatula_20[refseq_20GCF_5F000219495.3_202014-06-18]
2,187 sequences; 412,924,424 total letters
Query= AAMG01001752.1
Length=400
Score E
Sequences producing significant alignments: (Bits) Value
seq2187 214 4e-53
seq10 214 4e-53
seq4 214 4e-53
seq5 178 3e-42
seq41 167 5e-39
>seq2187
Length=124033
Score = 214 bits (236), Expect = 4e-53
Identities = 301/408 (74%), Gaps = 16/408 (4%)
Strand=Plus/Plus
Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60
||||||||||| ||||||| |||||| || ||||||||| | ||| ||| | |
Sbjct 22307 CGACTACGCCTTTCGGCCTGATCTTAGGCCCTGACTCACCCTCCGTGGACGAACCTTGCG 22366
Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119
||||||||| | | |||| | | |||||| |||| | || |||||| |||
Sbjct 22367 GAGGAACCCTTAGGTTTTCGGGGCATTGGATTCTCACCAATGTTTGCGTTACTCAAGCCG 22426
Query 120 GCATTCTCACT--CGCATCAACTCCACCACACAG-TCACCCGGCAGCTTCACCACTGACA 176
||||||| || ||| || |||| || | | || | ||| |||| || |
Sbjct 22427 ACATTCTCGCTTCCGCTTCG--TCCA--ACCCTGCTCGCGCGGGTACTTCGTT-CTAAGG 22481
Query 177 CG--ACGCTCCCCTACCCAACCACACAG-GTTGCCACAGCTTCGGCGGATAACTTAAGCC 233
|| ||||||||||||| | || | | ||||||||||||| ||| |||| |||
Sbjct 22482 CGGAACGCTCCCCTACCGATTCATTTTTAGATCCCACAGCTTCGGCAGATCGCTTA-GCC 22540
Query 234 CCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGA 293
||| | ||| ||||||| | | || || ||||||||||||||||||||||||||||
Sbjct 22541 CCGTT-CATCTTCGGCGCAAGAGCGCTCGATCAGTGAGCTATTACGCACTCTTTCAAGGG 22599
Query 294 TGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCC-ACATCCTTTCCCACTGA 352
|||||||||| | || |||||||||| ||||| || ||||| || |||||| ||||||
Sbjct 22600 TGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTCTGC-ACTCCTACCTCCTTTATCACTGA 22658
Query 353 GTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400
| | || |||||||||||||||| |||||||||||||||||||||||
Sbjct 22659 GCGATCATTTAGGGGCCTTAGCTGGTGATCTGGGCTGTTTCCCTCTCG 22706
>seq10
Length=496089
Score = 214 bits (236), Expect = 4e-53
Identities = 301/408 (74%), Gaps = 16/408 (4%)
Strand=Plus/Plus
Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60
||||||||||| ||||||| |||||| || ||||||||| | ||| ||| | |
Sbjct 183548 CGACTACGCCTTTCGGCCTGATCTTAGGCCCTGACTCACCCTCCGTGGACGAACCTTGCG 183607
Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119
||||||||| | | |||| | | |||||| |||| | || |||||| |||
Sbjct 183608 GAGGAACCCTTAGGTTTTCGGGGCATTGGATTCTCACCAATGTTTGCGTTACTCAAGCCG 183667
Query 120 GCATTCTCACT--CGCATCAACTCCACCACACAG-TCACCCGGCAGCTTCACCACTGACA 176
||||||| || ||| || |||| || | | || | ||| |||| || |
Sbjct 183668 ACATTCTCGCTTCCGCTTCG--TCCA--ACCCTGCTCGCGCGGGTACTTCGTT-CTAAGG 183722
Query 177 CG--ACGCTCCCCTACCCAACCACACAG-GTTGCCACAGCTTCGGCGGATAACTTAAGCC 233
|| ||||||||||||| | || | | ||||||||||||| ||| |||| |||
Sbjct 183723 CGGAACGCTCCCCTACCGATTCATTTTTAGATCCCACAGCTTCGGCAGATCGCTTA-GCC 183781
Query 234 CCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGA 293
||| | ||| ||||||| | | || || ||||||||||||||||||||||||||||
Sbjct 183782 CCGTT-CATCTTCGGCGCAAGAGCGCTCGATCAGTGAGCTATTACGCACTCTTTCAAGGG 183840
Query 294 TGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCC-ACATCCTTTCCCACTGA 352
|||||||||| | || |||||||||| ||||| || ||||| || |||||| ||||||
Sbjct 183841 TGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTCTGC-ACTCCTACCTCCTTTATCACTGA 183899
Query 353 GTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400
| | || |||||||||||||||| |||||||||||||||||||||||
Sbjct 183900 GCGATCATTTAGGGGCCTTAGCTGGTGATCTGGGCTGTTTCCCTCTCG 183947
>seq4
Length=56582383
Score = 214 bits (236), Expect = 4e-53
Identities = 301/408 (74%), Gaps = 16/408 (4%)
Strand=Plus/Minus
Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60
||||||||||| ||||||| |||||| || ||||||||| | ||| ||| | |
Sbjct 493968 CGACTACGCCTTTCGGCCTGATCTTAGGCCCTGACTCACCCTCCGTGGACGAACCTTGCG 493909
Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119
||||||||| | | |||| | | |||||| |||| | || |||||| |||
Sbjct 493908 GAGGAACCCTTAGGTTTTCGGGGCATTGGATTCTCACCAATGTTTGCGTTACTCAAGCCG 493849
Query 120 GCATTCTCACT--CGCATCAACTCCACCACACAG-TCACCCGGCAGCTTCACCACTGACA 176
||||||| || ||| || |||| || | | || | ||| |||| || |
Sbjct 493848 ACATTCTCGCTTCCGCTTCG--TCCA--ACCCTGCTCGCGCGGGTACTTCGTT-CTAAGG 493794
Query 177 CG--ACGCTCCCCTACCCAACCACACAG-GTTGCCACAGCTTCGGCGGATAACTTAAGCC 233
|| ||||||||||||| | || | | ||||||||||||| ||| |||| |||
Sbjct 493793 CGGAACGCTCCCCTACCGATTCATTTTTAGATCCCACAGCTTCGGCAGATCGCTTA-GCC 493735
Query 234 CCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGA 293
||| | ||| ||||||| | | || || ||||||||||||||||||||||||||||
Sbjct 493734 CCGTT-CATCTTCGGCGCAAGAGCGCTCGATCAGTGAGCTATTACGCACTCTTTCAAGGG 493676
Query 294 TGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCC-ACATCCTTTCCCACTGA 352
|||||||||| | || |||||||||| ||||| ||| |||| || |||||| ||||||
Sbjct 493675 TGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTCTGCA-CTCCTACCTCCTTTATCACTGA 493617
Query 353 GTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400
| | || |||||||||||||||| |||||||||||||||||||||||
Sbjct 493616 GCGATCATTTAGGGGCCTTAGCTGGTGATCTGGGCTGTTTCCCTCTCG 493569
Score = 214 bits (236), Expect = 4e-53
Identities = 301/408 (74%), Gaps = 16/408 (4%)
Strand=Plus/Minus
Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60
||||||||||| ||||||| |||||| || ||||||||| | ||| ||| | |
Sbjct 18191629 CGACTACGCCTTTCGGCCTGATCTTAGGCCCTGACTCACCCTCCGTGGACGAACCTTGCG 18191570
Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119
||||||||| | | |||| | | |||||| |||| | || |||||| |||
Sbjct 18191569 GAGGAACCCTTAGGTTTTCGGGGCATTGGATTCTCACCAATGTTTGCGTTACTCAAGCCG 18191510
Query 120 GCATTCTCACT--CGCATCAACTCCACCACACAG-TCACCCGGCAGCTTCACCACTGACA 176
||||||| || ||| || |||| || | | || | ||| |||| || |
Sbjct 18191509 ACATTCTCGCTTCCGCTTCG--TCCA--ACCCTGCTCGCGCGGGTACTTCGTT-CTAAGG 18191455
Query 177 CG--ACGCTCCCCTACCCAACCACACAG-GTTGCCACAGCTTCGGCGGATAACTTAAGCC 233
|| ||||||||||||| | || | | ||||||||||||| ||| |||| |||
Sbjct 18191454 CGGAACGCTCCCCTACCGATTCATTTTTAGATCCCACAGCTTCGGCAGATCGCTTA-GCC 18191396
Query 234 CCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGA 293
||| | ||| ||||||| | | || || ||||||||||||||||||||||||||||
Sbjct 18191395 CCGTT-CATCTTCGGCGCAAGAGCGCTCGATCAGTGAGCTATTACGCACTCTTTCAAGGG 18191337
Query 294 TGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCC-ACATCCTTTCCCACTGA 352
|||||||||| | || |||||||||| ||||| ||| |||| || |||||| ||||||
Sbjct 18191336 TGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTCTGCA-CTCCTACCTCCTTTATCACTGA 18191278
Query 353 GTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400
| | || |||||||||||||||| |||||||||||||||||||||||
Sbjct 18191277 GCGATCATTTAGGGGCCTTAGCTGGTGATCTGGGCTGTTTCCCTCTCG 18191230
>seq5
Length=43630510
Score = 178 bits (196), Expect = 3e-42
Identities = 287/399 (72%), Gaps = 14/399 (4%)
Strand=Plus/Minus
Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60
|||||||||| ||||||| |||||| || ||||||||| | ||| ||| | |
Sbjct 34658967 CGACTACGCCATTCGGCCTGATCTTAGGCCCTGACTCACCCTCTGTGGACGAACCTTGCG 34658908
Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119
||||||||| | | |||| | | |||||| |||| | || |||||| |||
Sbjct 34658907 GAGGAACCCTTAGGTTTTCGGGGCATTGGATTCTCACCAATGTTTGCGTTACTCAAGCCG 34658848
Query 120 GCATTCTCACT--CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACAC 177
||||||| || ||| || |||| || || | ||| |||| || | |
Sbjct 34658847 ACATTCTCGCTTCCGCTTCG--TCCAA-ACCTGCTCGCGCGGGTACTTCGTT-CTAAGGC 34658792
Query 178 G--ACGCTCCCCTACCCAACCACACAG-GTTGCCACAGCTTCGGCGGATAACTTAAGCCC 234
| || |||||||||| | || | | ||||||||| ||| ||| |||| ||||
Sbjct 34658791 GGAACTCTCCCCTACCGATTCATTTTTAGATCCCACAGCTTTGGCAGATCGCTTA-GCCC 34658733
Query 235 CGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGAT 294
|| | ||| |||||||| | | || || ||||||||||||| |||||||||||||| |
Sbjct 34658732 CGTT-CATCTTCGGCGCGAGAGCGCTCGATCAGTGAGCTATTATGCACTCTTTCAAGGGT 34658674
Query 295 GGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCC-ACATCCTTTCCCACTGAG 353
||||||||| | || |||||||||| ||||| ||| |||| || |||||| ||||||
Sbjct 34658673 GGCTGCTTCTAGGCAAACCTCCTGGCTGTCTCTGCA-CTCCTACCTCCTTTATCACTGAA 34658615
Query 354 TCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTT 392
| || |||||||||||||||| |||||||||||||||
Sbjct 34658614 CGATCATTTAGGGGCCTTAGCTGGTGATCTGGGCTGTTT 34658576
>seq41
Length=124265
Score = 167 bits (184), Expect = 5e-39
Identities = 153/192 (80%), Gaps = 6/192 (3%)
Strand=Plus/Minus
Query 212 GCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGC---GGAATCACTTGACCAGT 268
||||||| | || |||| ||||| | |||||| |||| || ||| || |||||||
Sbjct 6804 GCTTCGGTGAATCACTTGAGCCCTGATACATTTTCGGTGCCATGGAG---CTAGACCAGT 6748
Query 269 GAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACG 328
|||||||||||| |||| ||||||||||||||||||||| |||||||||||||| ||
Sbjct 6747 GAGCTATTACGCTTTCTTCAAAGGATGGCTGCTTCCAAGCCCACCTCCTGGTTGTCATCG 6688
Query 329 CAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCT 388
| ||| |||||| ||||| ||| | ||||||| ||||||| | ||||||||||
Sbjct 6687 CTCGATCACTTCCTTTTCCACTAAGTGATTGCTTAGGGACCTTAGCGTACGATCTGGGCT 6628
Query 389 GTTTCCCTCTCG 400
||||||||||||
Sbjct 6627 GTTTCCCTCTCG 6616
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1177574245888
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