Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Medicago_20truncatula_20[refseq_20GCF_5F000219495.3_202014-06-18]
2,187 sequences; 412,924,424 total letters
Query= AAMG01001821.1
Length=161
Score E
Sequences producing significant alignments: (Bits) Value
seq2187 118 9e-25
seq41 118 9e-25
seq3 118 9e-25
seq4 113 4e-23
seq8 104 2e-20
seq10 100 2e-19
>seq2187
Length=124033
Score = 118 bits (130), Expect = 9e-25
Identities = 122/160 (76%), Gaps = 0/160 (0%)
Strand=Plus/Plus
Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61
|||||||||| |||||||||| ||| | ||| || ||||||| |||||||||
Sbjct 26108 CGAGTTGCAGCCTACAATCCGAACTGAGGACGGGTTTTTGAAGTTAGCTCACCCTCGCGG 26167
Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121
| | ||| ||| ||| |||||||| ||||||| |||| |||||||| |||
Sbjct 26168 GGTCGCGATCCTTTGTCCCGTCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCAT 26227
Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161
|| ||||||||||||||| ||||||||||||| || ||||
Sbjct 26228 GATGACTTGACGTCATCCTCACCTTCCTCCGGCTTATCAC 26267
>seq41
Length=124265
Score = 118 bits (130), Expect = 9e-25
Identities = 123/160 (77%), Gaps = 1/160 (1%)
Strand=Plus/Minus
Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61
||||||||||| |||||||| ||| | | ||||| || ||| ||||| ||| | |
Sbjct 62298 CGAGTTGCAGAGAACAATCCGAACTGAGGCAATCTTTCCGG-ATTCGCTCCGCCTTACAG 62240
Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121
| || ||| |||| | |||||||| ||||||| |||| ||||||| ||||||
Sbjct 62239 CCTTGCTTCCCATTGTAATTGCCATTGTAGCACGTGTGTGGCCCAGCCCATAAAGGCCAT 62180
Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161
| |||||||||||||||||||||||||||| || | ||||
Sbjct 62179 GCGGACTTGACGTCATCCCCACCTTCCTCCAGTATATCAC 62140
Score = 100 bits (110), Expect = 2e-19
Identities = 94/120 (78%), Gaps = 0/120 (0%)
Strand=Plus/Plus
Query 42 GGATTAGCTCCCCCTCGCGGGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAA 101
||||| ||||| ||| | | | || ||| |||| | |||||||| |||||||
Sbjct 89662 GGATTCGCTCCGCCTTACAGCCTTGCTTCCCATTGTAATTGCCATTGTAGCACGTGTGTG 89721
Query 102 GCCCTACCCATAAGGGCCATGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161
|||| ||||||| ||||||| |||||||||||||||||||||||||||| || | ||||
Sbjct 89722 GCCCAGCCCATAAAGGCCATGCGGACTTGACGTCATCCCCACCTTCCTCCAGTATATCAC 89781
>seq3
Length=55515152
Score = 118 bits (130), Expect = 9e-25
Identities = 122/160 (76%), Gaps = 0/160 (0%)
Strand=Plus/Plus
Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61
|||||||||| |||||||||| ||| | ||| || ||||||| |||||||||
Sbjct 13224008 CGAGTTGCAGCCTACAATCCGAACTGAGGACGGGTTTTTGAAGTTAGCTCACCCTCGCGG 13224067
Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121
| | ||| ||| ||| |||||||| ||||||| |||| |||||||| |||
Sbjct 13224068 GGTCGCGATCCTTTGTCCCGTCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCAT 13224127
Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161
|| ||||||||||||||| ||||||||||||| || ||||
Sbjct 13224128 GATGACTTGACGTCATCCTCACCTTCCTCCGGCTTATCAC 13224167
>seq4
Length=56582383
Score = 113 bits (124), Expect = 4e-23
Identities = 121/160 (76%), Gaps = 0/160 (0%)
Strand=Plus/Minus
Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61
|||||||||| |||||||||| ||| | ||| || ||||||| |||||||||
Sbjct 490167 CGAGTTGCAGCCTACAATCCGAACTGAGGACGGGTTTTTGAAGTTAGCTCACCCTCGCGG 490108
Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121
| | ||| ||| ||| |||||||| ||||||| |||| |||||||| |||
Sbjct 490107 GGTCGCGATCCTTTGTCCCGTCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCAT 490048
Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161
|| || |||||||||||| ||||||||||||| || ||||
Sbjct 490047 GATGATTTGACGTCATCCTCACCTTCCTCCGGCTTATCAC 490008
>seq8
Length=45569985
Score = 104 bits (114), Expect = 2e-20
Identities = 120/159 (75%), Gaps = 2/159 (1%)
Strand=Plus/Plus
Query 3 GAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGGG 62
||||||||| ||||| |||| ||| | ||| || ||||||| |||||||| |
Sbjct 15002611 GAGTTGCAGCCTACATTCCGAACTGAGGACGGGTTTTTGAAGTTAGCTCACCCTCGCGAG 15002670
Query 63 TTGGCGGCCCTCTGT-ATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121
| || ||| ||| | || |||||||| ||||||| |||| |||||||| |||
Sbjct 15002671 ATCACGATCCTTTGTCACGT-CCATTGTAGAACGTGTGTCGCCCAGGGCATAAGGGGCAT 15002729
Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCA 160
|| |||||||||||| || |||||||||||||||| |||
Sbjct 15002730 GATGACTTGACGTCACCCTCACCTTCCTCCGGTTTATCA 15002768
>seq10
Length=496089
Score = 100 bits (110), Expect = 2e-19
Identities = 115/155 (74%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61
|||||||||| || ||||||| ||| | ||| ||| ||||||| ||||||||
Sbjct 187442 CGAGTTGCAGCCTGCAATCCGAACTGAGGACGGGTTTTTGGAGTTAGCTCACCCTCGCGA 187501
Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121
| | ||| |||| ||| |||||||| ||||||| |||| |||||||| |||
Sbjct 187502 GATCGCGACCCTTTGTCCCGCCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCAT 187561
Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTT 156
|| |||||| | |||||| | ||||||||||| ||
Sbjct 187562 GATGACTTGGCCTCATCCTCTCCTTCCTCCGGCTT 187596
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 415991186390
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |