Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Medicago_20truncatula_20[refseq_20GCF_5F000219495.3_202014-06-18] 2,187 sequences; 412,924,424 total letters Query= AAMG01001821.1 Length=161 Score E Sequences producing significant alignments: (Bits) Value seq2187 118 9e-25 seq41 118 9e-25 seq3 118 9e-25 seq4 113 4e-23 seq8 104 2e-20 seq10 100 2e-19 >seq2187 Length=124033 Score = 118 bits (130), Expect = 9e-25 Identities = 122/160 (76%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| |||||||||| ||| | ||| || ||||||| ||||||||| Sbjct 26108 CGAGTTGCAGCCTACAATCCGAACTGAGGACGGGTTTTTGAAGTTAGCTCACCCTCGCGG 26167 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | ||| ||| ||| |||||||| ||||||| |||| |||||||| ||| Sbjct 26168 GGTCGCGATCCTTTGTCCCGTCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCAT 26227 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || ||||||||||||||| ||||||||||||| || |||| Sbjct 26228 GATGACTTGACGTCATCCTCACCTTCCTCCGGCTTATCAC 26267 >seq41 Length=124265 Score = 118 bits (130), Expect = 9e-25 Identities = 123/160 (77%), Gaps = 1/160 (1%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 ||||||||||| |||||||| ||| | | ||||| || ||| ||||| ||| | | Sbjct 62298 CGAGTTGCAGAGAACAATCCGAACTGAGGCAATCTTTCCGG-ATTCGCTCCGCCTTACAG 62240 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | || ||| |||| | |||||||| ||||||| |||| ||||||| |||||| Sbjct 62239 CCTTGCTTCCCATTGTAATTGCCATTGTAGCACGTGTGTGGCCCAGCCCATAAAGGCCAT 62180 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 | |||||||||||||||||||||||||||| || | |||| Sbjct 62179 GCGGACTTGACGTCATCCCCACCTTCCTCCAGTATATCAC 62140 Score = 100 bits (110), Expect = 2e-19 Identities = 94/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 42 GGATTAGCTCCCCCTCGCGGGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAA 101 ||||| ||||| ||| | | | || ||| |||| | |||||||| ||||||| Sbjct 89662 GGATTCGCTCCGCCTTACAGCCTTGCTTCCCATTGTAATTGCCATTGTAGCACGTGTGTG 89721 Query 102 GCCCTACCCATAAGGGCCATGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 |||| ||||||| ||||||| |||||||||||||||||||||||||||| || | |||| Sbjct 89722 GCCCAGCCCATAAAGGCCATGCGGACTTGACGTCATCCCCACCTTCCTCCAGTATATCAC 89781 >seq3 Length=55515152 Score = 118 bits (130), Expect = 9e-25 Identities = 122/160 (76%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| |||||||||| ||| | ||| || ||||||| ||||||||| Sbjct 13224008 CGAGTTGCAGCCTACAATCCGAACTGAGGACGGGTTTTTGAAGTTAGCTCACCCTCGCGG 13224067 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | ||| ||| ||| |||||||| ||||||| |||| |||||||| ||| Sbjct 13224068 GGTCGCGATCCTTTGTCCCGTCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCAT 13224127 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || ||||||||||||||| ||||||||||||| || |||| Sbjct 13224128 GATGACTTGACGTCATCCTCACCTTCCTCCGGCTTATCAC 13224167 >seq4 Length=56582383 Score = 113 bits (124), Expect = 4e-23 Identities = 121/160 (76%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| |||||||||| ||| | ||| || ||||||| ||||||||| Sbjct 490167 CGAGTTGCAGCCTACAATCCGAACTGAGGACGGGTTTTTGAAGTTAGCTCACCCTCGCGG 490108 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | ||| ||| ||| |||||||| ||||||| |||| |||||||| ||| Sbjct 490107 GGTCGCGATCCTTTGTCCCGTCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCAT 490048 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || || |||||||||||| ||||||||||||| || |||| Sbjct 490047 GATGATTTGACGTCATCCTCACCTTCCTCCGGCTTATCAC 490008 >seq8 Length=45569985 Score = 104 bits (114), Expect = 2e-20 Identities = 120/159 (75%), Gaps = 2/159 (1%) Strand=Plus/Plus Query 3 GAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGGG 62 ||||||||| ||||| |||| ||| | ||| || ||||||| |||||||| | Sbjct 15002611 GAGTTGCAGCCTACATTCCGAACTGAGGACGGGTTTTTGAAGTTAGCTCACCCTCGCGAG 15002670 Query 63 TTGGCGGCCCTCTGT-ATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | || ||| ||| | || |||||||| ||||||| |||| |||||||| ||| Sbjct 15002671 ATCACGATCCTTTGTCACGT-CCATTGTAGAACGTGTGTCGCCCAGGGCATAAGGGGCAT 15002729 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCA 160 || |||||||||||| || |||||||||||||||| ||| Sbjct 15002730 GATGACTTGACGTCACCCTCACCTTCCTCCGGTTTATCA 15002768 >seq10 Length=496089 Score = 100 bits (110), Expect = 2e-19 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| || ||||||| ||| | ||| ||| ||||||| |||||||| Sbjct 187442 CGAGTTGCAGCCTGCAATCCGAACTGAGGACGGGTTTTTGGAGTTAGCTCACCCTCGCGA 187501 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | ||| |||| ||| |||||||| ||||||| |||| |||||||| ||| Sbjct 187502 GATCGCGACCCTTTGTCCCGCCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCAT 187561 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTT 156 || |||||| | |||||| | ||||||||||| || Sbjct 187562 GATGACTTGGCCTCATCCTCTCCTTCCTCCGGCTT 187596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 415991186390