Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Medicago_20truncatula_20[refseq_20GCF_5F000219495.3_202014-06-18] 2,187 sequences; 412,924,424 total letters Query= AAMG01001844.1 Length=290 Score E Sequences producing significant alignments: (Bits) Value seq2187 158 2e-36 seq10 158 2e-36 seq3 158 2e-36 seq2 158 2e-36 seq41 141 2e-31 seq8 140 5e-31 seq1 93.3 7e-17 >seq2187 Length=124033 Score = 158 bits (174), Expect = 2e-36 Identities = 204/279 (73%), Gaps = 2/279 (1%) Strand=Plus/Plus Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65 ||||||| ||||| |||||| | | |||||| || ||||||| |||||||||| Sbjct 26662 GCTTTCGTCTCTCAGTGTCAGTGTCGGCCCAGCAGAGTGCTTTCGCCATTGGTGTTCCTT 26721 Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125 | || |||||||||||||||||| ||| | |||||| |||| || | | |||| || Sbjct 26722 CCGATCTCTACGCATTTCACCGCTCCACCGGAAATTCCCTCTGCCCCTACCGTACTCTAG 26781 Query 126 AAAAACAGTTT-CAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCC 184 | ||||| || | | | | ||||||||||| | ||| || | |||| Sbjct 26782 CTTAGTAGTTTTCACCACCTGTCCA-GGGTTGAGCCCTGGGATTTGACGGCGAACTTAAA 26840 Query 185 TTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATT 244 || |||||| | |||||| |||||| | |||||||||||||||| ||| || || Sbjct 26841 AAGCCACCTACAGACGCTTTACGCCCAATCATTCCGGATAACGCTTGCATCCTCTGTCTT 26900 Query 245 ACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCC 283 ||||||||||||||||| ||||||||| ||||||||| Sbjct 26901 ACCGCGGCTGCTGGCACAGAGTTAGCCGATGCTTATTCC 26939 >seq10 Length=496089 Score = 158 bits (174), Expect = 2e-36 Identities = 204/279 (73%), Gaps = 2/279 (1%) Strand=Plus/Plus Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65 ||||||| ||||| |||||| | | |||||| || ||||||| |||||||||| Sbjct 187995 GCTTTCGTCTCTCAGTGTCAGTGTCGGCCCAGCAGAGTGCTTTCGCCATTGGTGTTCCTT 188054 Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125 | || |||||||||||||||||| ||| | |||||| |||| || | | |||| || Sbjct 188055 CCGATCTCTACGCATTTCACCGCTCCACCGGAAATTCCCTCTGCCCCTACCGTACTCTAG 188114 Query 126 AAAAACAGTTT-CAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCC 184 | ||||| || | | | | ||||||||||| | ||| || | |||| Sbjct 188115 CTTAGTAGTTTTCACCACCTGTCCA-GGGTTGAGCCCTGGGATTTGACGGCGAACTTAAA 188173 Query 185 TTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATT 244 || |||||| | |||||| |||||| | |||||||||||||||| ||| || || Sbjct 188174 AAGCCACCTACAGACGCTTTACGCCCAATCATTCCGGATAACGCTTGCATCCTCTGTCTT 188233 Query 245 ACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCC 283 ||||||||||||||||| ||||||||| ||||||||| Sbjct 188234 ACCGCGGCTGCTGGCACAGAGTTAGCCGATGCTTATTCC 188272 >seq3 Length=55515152 Score = 158 bits (174), Expect = 2e-36 Identities = 204/279 (73%), Gaps = 2/279 (1%) Strand=Plus/Plus Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65 ||||||| ||||| |||||| | | |||||| || ||||||| |||||||||| Sbjct 13224562 GCTTTCGTCTCTCAGTGTCAGTGTCGGCCCAGCAGAGTGCTTTCGCCATTGGTGTTCCTT 13224621 Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125 | || |||||||||||||||||| ||| | |||||| |||| || | | |||| || Sbjct 13224622 CCGATCTCTACGCATTTCACCGCTCCACCGGAAATTCCCTCTGCCCCTACCGTACTCTAG 13224681 Query 126 AAAAACAGTTT-CAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCC 184 | ||||| || | | | | ||||||||||| | ||| || | |||| Sbjct 13224682 CTTAGTAGTTTTCACCACCTGTCCA-GGGTTGAGCCCTGGGATTTGACGGCGAACTTAAA 13224740 Query 185 TTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATT 244 || |||||| | |||||| |||||| | |||||||||||||||| ||| || || Sbjct 13224741 AAGCCACCTACAGACGCTTTACGCCCAATCATTCCGGATAACGCTTGCATCCTCTGTCTT 13224800 Query 245 ACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCC 283 ||||||||||||||||| ||||||||| ||||||||| Sbjct 13224801 ACCGCGGCTGCTGGCACAGAGTTAGCCGATGCTTATTCC 13224839 Score = 102 bits (112), Expect = 1e-19 Identities = 80/96 (83%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247 || |||||| | |||||| |||||| | |||||||||||||||| ||| || ||||| Sbjct 41641405 CCACCTACAGACGCTTTACGCCCAATCATTCCGGATAACGCTTGCATCCTCTGTCTTACC 41641464 Query 248 GCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCC 283 |||||||||||||| ||||||||| ||||||||| Sbjct 41641465 GCGGCTGCTGGCACAGAGTTAGCCGATGCTTATTCC 41641500 >seq2 Length=45729672 Score = 158 bits (174), Expect = 2e-36 Identities = 204/279 (73%), Gaps = 2/279 (1%) Strand=Plus/Plus Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65 ||||||| ||||| |||||| | | |||||| || ||||||| |||||||||| Sbjct 14465074 GCTTTCGTCTCTCAGTGTCAGTGTCGGCCCAGCAGAGTGCTTTCGCCATTGGTGTTCCTT 14465133 Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125 | || |||||||||||||||||| || | |||||| ||||| || | | |||| || Sbjct 14465134 CCGATCTCTACGCATTTCACCGCTCCATCGGAAATTCCCTTTGCCCCTACCGTACTCTAG 14465193 Query 126 AAAAACAGTTT-CAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCC 184 | ||||| || | | | | ||||||||||| | ||| || | |||| Sbjct 14465194 CTTAGTAGTTTTCACCACCTGTCCA-GGGTTGAGCCCTGGGATTTGACGGCGAACTTAAA 14465252 Query 185 TTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATT 244 || |||||| | |||||| |||||| | |||||||||||||||| ||| || || Sbjct 14465253 AAGCCACCTACAGACGCTTTACGCCCAATCATTCCGGATAACGCTTGCATCCTCTGTCTT 14465312 Query 245 ACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCC 283 ||||||||||||||||| ||||||||| ||||||||| Sbjct 14465313 ACCGCGGCTGCTGGCACAGAGTTAGCCGATGCTTATTCC 14465351 >seq41 Length=124265 Score = 141 bits (156), Expect = 2e-31 Identities = 207/290 (71%), Gaps = 12/290 (4%) Strand=Plus/Plus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 |||| |||||||| | ||||||| || |||| | | |||||||| ||| || Sbjct 90574 CCCATGCTTTCGCACTCCAGCGTCGGTAGGGACCCAGAGAGCTGCCTTCGCTTTTGGCGT 90633 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 |||| |||| |||| || |||||||| ||||||||| |||||| | ||||| ||| Sbjct 90634 TCCTTCGTAGATCTGCGGATTTCACCCCTACACACGAAATTCCACTCTCCTCTGTCTCAC 90693 Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTT----GAGCCCATAGTTTTCACATCT 176 ||||| || ||||| | ||| | | ||| | | | || ||||| | | Sbjct 90694 TCAAGTGAATTGGTTTCGAGAGCATTCCACCAGTTTTTGGCGACTTTAACTTTCA-ACCC 90752 Query 177 GACTTGCCTTC-CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCAC 235 || ||| |||||||| ||||||||| |||| | | |||| | ||| |||||| | Sbjct 90753 GA------TTCACCGCCTACGTGCCCTTTACGCCCAGTCATTCCGAAGAACACTTGCCCC 90806 Query 236 CTACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTC 285 | ||| |||||||||||||||||||| ||||||||| ||||| |||||| Sbjct 90807 CCCCGTCTTACCGCGGCTGCTGGCACGGAGTTAGCCGGGGCTTCTTCCTC 90856 Score = 132 bits (146), Expect = 8e-29 Identities = 202/285 (71%), Gaps = 12/285 (4%) Strand=Plus/Minus Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65 |||||||| | ||||||| || |||| | | |||||||| ||| |||||| Sbjct 61342 GCTTTCGCACTCCAGCGTCGGTAGGGACCCAGAGAGCTGCCTTCGCTTTTGGCGTTCCTT 61283 Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125 ||| |||| || |||||||| ||||||||| |||||| | ||||| |||||||| Sbjct 61282 CGTTGATCTGCGGATTTCACCCCTACACACGAAATTCCACTCTCCTCTGTCTCACTCAAG 61223 Query 126 AAAAACAGTTTCAAATGCAGGCTATGGGTT----GAGCCCATAGTTTTCACATCTGACTT 181 || ||||| | ||| | | ||| | | | || ||||| | | || Sbjct 61222 TGAATTGGTTTCGAGAGCATTCCACCAGTTTTTGGCGACTTTAACTTTCA-ACCCGA--- 61167 Query 182 GCCTTC-CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACG 240 ||| |||||||| ||||||||| |||| | | |||| | ||| |||||| || || Sbjct 61166 ---TTCACCGCCTACGTGCCCTTTACGCCCAGTCATTCCGAAGAACACTTGCCCCCCCCG 61110 Query 241 TATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTC 285 | |||||||||||||||||||| ||||||||| ||||| |||||| Sbjct 61109 TCTTACCGCGGCTGCTGGCACGGAGTTAGCCGGGGCTTCTTCCTC 61065 >seq8 Length=45569985 Score = 140 bits (154), Expect = 5e-31 Identities = 200/279 (72%), Gaps = 2/279 (1%) Strand=Plus/Plus Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65 ||||||| ||||| || ||| | | |||||| || ||||||| |||||||||| Sbjct 15006067 GCTTTCGTCTCTCAGTGTTAGTGTCGGCCCAGCAGAGTGCTTTCGCCATTGGTGTTCCTT 15006126 Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125 | || ||||||||||||| | || ||| | |||||| |||| || | | |||| || Sbjct 15006127 CCGATCTCTACGCATTTCATCACTCCACCGGAAATTCCCTCTGCCCCTACCGTACTCTAG 15006186 Query 126 AAAAACAGTTT-CAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCC 184 | ||||| || | | | | | || |||||||| || ||| || | |||| Sbjct 15006187 CTTAGTAGTTTTCACAACCTGTCCA-GGTTTGAGCCCTGAGATTTGACGGCGAACTTAAA 15006245 Query 185 TTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATT 244 || |||||| | |||||| |||||| | | |||||||||||||| ||| || || Sbjct 15006246 AAGCCACCTACAGACGCTTTACGCCCAATCATTTCGGATAACGCTTGCATCCTCTGTCTT 15006305 Query 245 ACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCC 283 || |||||||||||||| ||||||||| ||||||||| Sbjct 15006306 ACTGCGGCTGCTGGCACAGAGTTAGCCGATGCTTATTCC 15006344 >seq1 Length=52991155 Score = 93.3 bits (102), Expect = 7e-17 Identities = 147/208 (71%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 43 CGCCTTCGCCACTGGTGTTCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTC 102 ||| ||||||| |||||||||| | || |||||||||||||||||| ||| | ||||| Sbjct 43192346 CGCTTTCGCCATTGGTGTTCCTTCCGATCTCTACGCATTTCACCGCTCCACCGGAAATTC 43192405 Query 103 CGATTGCCTCTCCAGCACTCAAGAAAAACAG-TTTCAAATGCAGGCTATGGGTTGAGCCC 161 | |||| || | | |||| || | || ||||| | | | | ||||||||||| Sbjct 43192406 CCTCTGCCCCTACCGTACTCTAGCTTAGTAGTTTTCACCACCTGTCCA-GGGTTGAGCCC 43192464 Query 162 ATAGTTTTCACATCTGACTTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGG 221 | ||| || |||| || |||||| | |||||| |||||| | ||||| Sbjct 43192465 TGGGATTTGACGGTGAACTTAAAAAGCCACCTACAGACGCTTTACGCCCAATCATTCCGG 43192524 Query 222 ATAACGCTTGCCACCTACGTATTACCGC 249 ||||||||||| ||| || ||| ||| Sbjct 43192525 ATAACGCTTGCATCCTCTGTCTTATCGC 43192552 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 828782440577