Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Medicago_20truncatula_20[refseq_20GCF_5F000219495.3_202014-06-18]
2,187 sequences; 412,924,424 total letters
Query= AAMG01001844.1
Length=290
Score E
Sequences producing significant alignments: (Bits) Value
seq2187 158 2e-36
seq10 158 2e-36
seq3 158 2e-36
seq2 158 2e-36
seq41 141 2e-31
seq8 140 5e-31
seq1 93.3 7e-17
>seq2187
Length=124033
Score = 158 bits (174), Expect = 2e-36
Identities = 204/279 (73%), Gaps = 2/279 (1%)
Strand=Plus/Plus
Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65
||||||| ||||| |||||| | | |||||| || ||||||| ||||||||||
Sbjct 26662 GCTTTCGTCTCTCAGTGTCAGTGTCGGCCCAGCAGAGTGCTTTCGCCATTGGTGTTCCTT 26721
Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125
| || |||||||||||||||||| ||| | |||||| |||| || | | |||| ||
Sbjct 26722 CCGATCTCTACGCATTTCACCGCTCCACCGGAAATTCCCTCTGCCCCTACCGTACTCTAG 26781
Query 126 AAAAACAGTTT-CAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCC 184
| ||||| || | | | | ||||||||||| | ||| || | ||||
Sbjct 26782 CTTAGTAGTTTTCACCACCTGTCCA-GGGTTGAGCCCTGGGATTTGACGGCGAACTTAAA 26840
Query 185 TTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATT 244
|| |||||| | |||||| |||||| | |||||||||||||||| ||| || ||
Sbjct 26841 AAGCCACCTACAGACGCTTTACGCCCAATCATTCCGGATAACGCTTGCATCCTCTGTCTT 26900
Query 245 ACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCC 283
||||||||||||||||| ||||||||| |||||||||
Sbjct 26901 ACCGCGGCTGCTGGCACAGAGTTAGCCGATGCTTATTCC 26939
>seq10
Length=496089
Score = 158 bits (174), Expect = 2e-36
Identities = 204/279 (73%), Gaps = 2/279 (1%)
Strand=Plus/Plus
Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65
||||||| ||||| |||||| | | |||||| || ||||||| ||||||||||
Sbjct 187995 GCTTTCGTCTCTCAGTGTCAGTGTCGGCCCAGCAGAGTGCTTTCGCCATTGGTGTTCCTT 188054
Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125
| || |||||||||||||||||| ||| | |||||| |||| || | | |||| ||
Sbjct 188055 CCGATCTCTACGCATTTCACCGCTCCACCGGAAATTCCCTCTGCCCCTACCGTACTCTAG 188114
Query 126 AAAAACAGTTT-CAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCC 184
| ||||| || | | | | ||||||||||| | ||| || | ||||
Sbjct 188115 CTTAGTAGTTTTCACCACCTGTCCA-GGGTTGAGCCCTGGGATTTGACGGCGAACTTAAA 188173
Query 185 TTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATT 244
|| |||||| | |||||| |||||| | |||||||||||||||| ||| || ||
Sbjct 188174 AAGCCACCTACAGACGCTTTACGCCCAATCATTCCGGATAACGCTTGCATCCTCTGTCTT 188233
Query 245 ACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCC 283
||||||||||||||||| ||||||||| |||||||||
Sbjct 188234 ACCGCGGCTGCTGGCACAGAGTTAGCCGATGCTTATTCC 188272
>seq3
Length=55515152
Score = 158 bits (174), Expect = 2e-36
Identities = 204/279 (73%), Gaps = 2/279 (1%)
Strand=Plus/Plus
Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65
||||||| ||||| |||||| | | |||||| || ||||||| ||||||||||
Sbjct 13224562 GCTTTCGTCTCTCAGTGTCAGTGTCGGCCCAGCAGAGTGCTTTCGCCATTGGTGTTCCTT 13224621
Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125
| || |||||||||||||||||| ||| | |||||| |||| || | | |||| ||
Sbjct 13224622 CCGATCTCTACGCATTTCACCGCTCCACCGGAAATTCCCTCTGCCCCTACCGTACTCTAG 13224681
Query 126 AAAAACAGTTT-CAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCC 184
| ||||| || | | | | ||||||||||| | ||| || | ||||
Sbjct 13224682 CTTAGTAGTTTTCACCACCTGTCCA-GGGTTGAGCCCTGGGATTTGACGGCGAACTTAAA 13224740
Query 185 TTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATT 244
|| |||||| | |||||| |||||| | |||||||||||||||| ||| || ||
Sbjct 13224741 AAGCCACCTACAGACGCTTTACGCCCAATCATTCCGGATAACGCTTGCATCCTCTGTCTT 13224800
Query 245 ACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCC 283
||||||||||||||||| ||||||||| |||||||||
Sbjct 13224801 ACCGCGGCTGCTGGCACAGAGTTAGCCGATGCTTATTCC 13224839
Score = 102 bits (112), Expect = 1e-19
Identities = 80/96 (83%), Gaps = 0/96 (0%)
Strand=Plus/Plus
Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247
|| |||||| | |||||| |||||| | |||||||||||||||| ||| || |||||
Sbjct 41641405 CCACCTACAGACGCTTTACGCCCAATCATTCCGGATAACGCTTGCATCCTCTGTCTTACC 41641464
Query 248 GCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCC 283
|||||||||||||| ||||||||| |||||||||
Sbjct 41641465 GCGGCTGCTGGCACAGAGTTAGCCGATGCTTATTCC 41641500
>seq2
Length=45729672
Score = 158 bits (174), Expect = 2e-36
Identities = 204/279 (73%), Gaps = 2/279 (1%)
Strand=Plus/Plus
Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65
||||||| ||||| |||||| | | |||||| || ||||||| ||||||||||
Sbjct 14465074 GCTTTCGTCTCTCAGTGTCAGTGTCGGCCCAGCAGAGTGCTTTCGCCATTGGTGTTCCTT 14465133
Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125
| || |||||||||||||||||| || | |||||| ||||| || | | |||| ||
Sbjct 14465134 CCGATCTCTACGCATTTCACCGCTCCATCGGAAATTCCCTTTGCCCCTACCGTACTCTAG 14465193
Query 126 AAAAACAGTTT-CAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCC 184
| ||||| || | | | | ||||||||||| | ||| || | ||||
Sbjct 14465194 CTTAGTAGTTTTCACCACCTGTCCA-GGGTTGAGCCCTGGGATTTGACGGCGAACTTAAA 14465252
Query 185 TTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATT 244
|| |||||| | |||||| |||||| | |||||||||||||||| ||| || ||
Sbjct 14465253 AAGCCACCTACAGACGCTTTACGCCCAATCATTCCGGATAACGCTTGCATCCTCTGTCTT 14465312
Query 245 ACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCC 283
||||||||||||||||| ||||||||| |||||||||
Sbjct 14465313 ACCGCGGCTGCTGGCACAGAGTTAGCCGATGCTTATTCC 14465351
>seq41
Length=124265
Score = 141 bits (156), Expect = 2e-31
Identities = 207/290 (71%), Gaps = 12/290 (4%)
Strand=Plus/Plus
Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60
|||| |||||||| | ||||||| || |||| | | |||||||| ||| ||
Sbjct 90574 CCCATGCTTTCGCACTCCAGCGTCGGTAGGGACCCAGAGAGCTGCCTTCGCTTTTGGCGT 90633
Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120
|||| |||| |||| || |||||||| ||||||||| |||||| | ||||| |||
Sbjct 90634 TCCTTCGTAGATCTGCGGATTTCACCCCTACACACGAAATTCCACTCTCCTCTGTCTCAC 90693
Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTT----GAGCCCATAGTTTTCACATCT 176
||||| || ||||| | ||| | | ||| | | | || ||||| | |
Sbjct 90694 TCAAGTGAATTGGTTTCGAGAGCATTCCACCAGTTTTTGGCGACTTTAACTTTCA-ACCC 90752
Query 177 GACTTGCCTTC-CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCAC 235
|| ||| |||||||| ||||||||| |||| | | |||| | ||| |||||| |
Sbjct 90753 GA------TTCACCGCCTACGTGCCCTTTACGCCCAGTCATTCCGAAGAACACTTGCCCC 90806
Query 236 CTACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTC 285
| ||| |||||||||||||||||||| ||||||||| ||||| ||||||
Sbjct 90807 CCCCGTCTTACCGCGGCTGCTGGCACGGAGTTAGCCGGGGCTTCTTCCTC 90856
Score = 132 bits (146), Expect = 8e-29
Identities = 202/285 (71%), Gaps = 12/285 (4%)
Strand=Plus/Minus
Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65
|||||||| | ||||||| || |||| | | |||||||| ||| ||||||
Sbjct 61342 GCTTTCGCACTCCAGCGTCGGTAGGGACCCAGAGAGCTGCCTTCGCTTTTGGCGTTCCTT 61283
Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125
||| |||| || |||||||| ||||||||| |||||| | ||||| ||||||||
Sbjct 61282 CGTTGATCTGCGGATTTCACCCCTACACACGAAATTCCACTCTCCTCTGTCTCACTCAAG 61223
Query 126 AAAAACAGTTTCAAATGCAGGCTATGGGTT----GAGCCCATAGTTTTCACATCTGACTT 181
|| ||||| | ||| | | ||| | | | || ||||| | | ||
Sbjct 61222 TGAATTGGTTTCGAGAGCATTCCACCAGTTTTTGGCGACTTTAACTTTCA-ACCCGA--- 61167
Query 182 GCCTTC-CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACG 240
||| |||||||| ||||||||| |||| | | |||| | ||| |||||| || ||
Sbjct 61166 ---TTCACCGCCTACGTGCCCTTTACGCCCAGTCATTCCGAAGAACACTTGCCCCCCCCG 61110
Query 241 TATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTC 285
| |||||||||||||||||||| ||||||||| ||||| ||||||
Sbjct 61109 TCTTACCGCGGCTGCTGGCACGGAGTTAGCCGGGGCTTCTTCCTC 61065
>seq8
Length=45569985
Score = 140 bits (154), Expect = 5e-31
Identities = 200/279 (72%), Gaps = 2/279 (1%)
Strand=Plus/Plus
Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65
||||||| ||||| || ||| | | |||||| || ||||||| ||||||||||
Sbjct 15006067 GCTTTCGTCTCTCAGTGTTAGTGTCGGCCCAGCAGAGTGCTTTCGCCATTGGTGTTCCTT 15006126
Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125
| || ||||||||||||| | || ||| | |||||| |||| || | | |||| ||
Sbjct 15006127 CCGATCTCTACGCATTTCATCACTCCACCGGAAATTCCCTCTGCCCCTACCGTACTCTAG 15006186
Query 126 AAAAACAGTTT-CAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCC 184
| ||||| || | | | | | || |||||||| || ||| || | ||||
Sbjct 15006187 CTTAGTAGTTTTCACAACCTGTCCA-GGTTTGAGCCCTGAGATTTGACGGCGAACTTAAA 15006245
Query 185 TTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATT 244
|| |||||| | |||||| |||||| | | |||||||||||||| ||| || ||
Sbjct 15006246 AAGCCACCTACAGACGCTTTACGCCCAATCATTTCGGATAACGCTTGCATCCTCTGTCTT 15006305
Query 245 ACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCC 283
|| |||||||||||||| ||||||||| |||||||||
Sbjct 15006306 ACTGCGGCTGCTGGCACAGAGTTAGCCGATGCTTATTCC 15006344
>seq1
Length=52991155
Score = 93.3 bits (102), Expect = 7e-17
Identities = 147/208 (71%), Gaps = 2/208 (1%)
Strand=Plus/Plus
Query 43 CGCCTTCGCCACTGGTGTTCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTC 102
||| ||||||| |||||||||| | || |||||||||||||||||| ||| | |||||
Sbjct 43192346 CGCTTTCGCCATTGGTGTTCCTTCCGATCTCTACGCATTTCACCGCTCCACCGGAAATTC 43192405
Query 103 CGATTGCCTCTCCAGCACTCAAGAAAAACAG-TTTCAAATGCAGGCTATGGGTTGAGCCC 161
| |||| || | | |||| || | || ||||| | | | | |||||||||||
Sbjct 43192406 CCTCTGCCCCTACCGTACTCTAGCTTAGTAGTTTTCACCACCTGTCCA-GGGTTGAGCCC 43192464
Query 162 ATAGTTTTCACATCTGACTTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGG 221
| ||| || |||| || |||||| | |||||| |||||| | |||||
Sbjct 43192465 TGGGATTTGACGGTGAACTTAAAAAGCCACCTACAGACGCTTTACGCCCAATCATTCCGG 43192524
Query 222 ATAACGCTTGCCACCTACGTATTACCGC 249
||||||||||| ||| || ||| |||
Sbjct 43192525 ATAACGCTTGCATCCTCTGTCTTATCGC 43192552
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 828782440577
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