Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Medicago_20truncatula_20[refseq_20GCF_5F000219495.3_202014-06-18] 2,187 sequences; 412,924,424 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq2187 268 1e-69 seq4 268 1e-69 seq10 259 8e-67 seq5 241 2e-61 seq7 228 1e-57 seq41 196 8e-48 seq2 149 1e-33 seq3 123 4e-26 seq1 73.4 6e-11 >seq2187 Length=124033 Score = 268 bits (296), Expect = 1e-69 Identities = 224/273 (82%), Gaps = 1/273 (0%) Strand=Plus/Plus Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC- 62 || |||||| ||||||||| |||||| |||||| ||| |||| ||| |||||| Sbjct 20917 GGTGGGCTTACTACTTAGATGCTTTCAGCAGTTATCCGCTCCGCACTTGGCTACCCAGCG 20976 Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122 | | | |||||| | ||||||| |||||||||| |||| |||||||||||||||||| Sbjct 20977 TTTACCGTTGGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACT 21036 Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCG 182 | ||| || ||||||||| || |||||||| |||||| ||||||||||||||| || Sbjct 21037 AGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCGGATATGGACCGAACTGTCTCACG 21096 Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCT 242 |||||||||||||||||| ||| || ||||||||||||||||||||||||||||| || | Sbjct 21097 ACGTTCTGAACCCAGCTCACGTACCGCTTTAATGGGCGAACAGCCCAACCCTTGGAACAT 21156 Query 243 ACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||| |||| ||||| | || |||||||||||| Sbjct 21157 ACTACAGCTCCAGGTGGCGAAGAGCCGACATCG 21189 >seq4 Length=56582383 Score = 268 bits (296), Expect = 1e-69 Identities = 224/273 (82%), Gaps = 1/273 (0%) Strand=Plus/Minus Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC- 62 || |||||| ||||||||| |||||| |||||| ||| |||| ||| |||||| Sbjct 495359 GGTGGGCTTACTACTTAGATGCTTTCAGCAGTTATCCGCTCCGCACTTGGCTACCCAGCG 495300 Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122 | | | |||||| | ||||||| |||||||||| |||| |||||||||||||||||| Sbjct 495299 TTTACCGTTGGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACT 495240 Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCG 182 | ||| || ||||||||| || |||||||| |||||| ||||||||||||||| || Sbjct 495239 AGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCGGATATGGACCGAACTGTCTCACG 495180 Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCT 242 |||||||||||||||||| ||| || ||||||||||||||||||||||||||||| || | Sbjct 495179 ACGTTCTGAACCCAGCTCACGTACCGCTTTAATGGGCGAACAGCCCAACCCTTGGAACAT 495120 Query 243 ACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||| |||| ||||| | || |||||||||||| Sbjct 495119 ACTACAGCTCCAGGTGGCGAAGAGCCGACATCG 495087 Score = 264 bits (292), Expect = 2e-68 Identities = 223/273 (82%), Gaps = 1/273 (0%) Strand=Plus/Minus Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC- 62 || |||||| ||||||||| |||||| |||||| ||| |||| ||| |||||| Sbjct 18193020 GGTGGGCTTACTACTTAGATGCTTTCAGCAGTTATCCGCTCCGCACTTGGCTACCCAGCG 18192961 Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122 | | | |||||| | ||||||| |||||||||| |||| |||||||||||||||||| Sbjct 18192960 TTTACCGTTGGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACT 18192901 Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCG 182 | ||| || ||||||||| || |||||||| |||||| ||||||||||||||| || Sbjct 18192900 AGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCGGATATGGACCGAACTGTCTCACG 18192841 Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCT 242 |||||||||||||||||| ||| || ||||||||||||||||||||||||||||| | | Sbjct 18192840 ACGTTCTGAACCCAGCTCACGTACCGCTTTAATGGGCGAACAGCCCAACCCTTGGAATAT 18192781 Query 243 ACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||| |||| ||||| | || |||||||||||| Sbjct 18192780 ACTACAGCTCCAGGTGGCGAAGAGCCGACATCG 18192748 >seq10 Length=496089 Score = 259 bits (286), Expect = 8e-67 Identities = 222/273 (81%), Gaps = 1/273 (0%) Strand=Plus/Plus Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC- 62 || |||||| |||| |||| |||||| |||||| ||| |||| ||| |||||| Sbjct 182158 GGTGGGCTTACTACTTATATGCTTTCAGCAGTTATCCTCTCCGCACTTGGCTACCCAGCG 182217 Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122 | | | | |||| | ||||||| |||||||||| |||| |||||||||||||||||| Sbjct 182218 TTTACCGTAGGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACT 182277 Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCG 182 | ||| || ||||||||| || |||||||| |||||| ||||||||||||||| || Sbjct 182278 AGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCGGATATGGACCGAACTGTCTCACG 182337 Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCT 242 |||||||||||||||||| ||| || ||||||||||||||||||||||||||||| || | Sbjct 182338 ACGTTCTGAACCCAGCTCACGTACCGCTTTAATGGGCGAACAGCCCAACCCTTGGAACAT 182397 Query 243 ACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||| |||| ||||| | || |||||||||||| Sbjct 182398 ACTACAGCTCCAGGTGGCGAAGAGCCGACATCG 182430 >seq5 Length=43630510 Score = 241 bits (266), Expect = 2e-61 Identities = 218/273 (80%), Gaps = 1/273 (0%) Strand=Plus/Minus Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC- 62 || |||||| ||||||||| |||||| |||||| ||| |||| ||| |||||| Sbjct 34660361 GGTGGGCTTACTACTTAGATGCTTTCAGCAGTTATCCGCTCCGCACTTGGCTACCCAGCG 34660302 Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122 | | | |||||| | ||||||| ||||| |||| |||| ||||| |||||||||||| Sbjct 34660301 TTTACCGTTGGCACGATAACTGGTACACCATAGGTGCGTCCTTCCCGTTCCTCTCGTACT 34660242 Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCG 182 | ||| || ||||||||| || |||||||| || ||| |||| |||||||||| || Sbjct 34660241 AGGGAAAGGTCCTCTCAATGGTCTAACGCCCACACCGAATATGGACTGAACTGTCTCACG 34660182 Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCT 242 |||||||| ||||||||| ||| || |||||||||||||||| |||||||||||| || | Sbjct 34660181 ACGTTCTGTACCCAGCTCACGTACCGCTTTAATGGGCGAACAACCCAACCCTTGGAACAT 34660122 Query 243 ACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||| |||| ||||| | || |||||||||||| Sbjct 34660121 ACTACAGCTCCAGGTGGCGAAGAGCCGACATCG 34660089 Score = 77.0 bits (84), Expect = 5e-12 Identities = 56/65 (86%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 211 TTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGA 270 || || |||||||| || |||||||||||||| ||||| |||||||||| || ||| ||| Sbjct 27338527 TTCATCGGCGAACAACCGAACCCTTGGGACCTTCTTCAACCCCAGGATGTGATGAGTCGA 27338586 Query 271 CATCG 275 ||||| Sbjct 27338587 CATCG 27338591 >seq7 Length=49172423 Score = 228 bits (252), Expect = 1e-57 Identities = 174/206 (84%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 70 TTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACA 129 |||||| | ||||||| |||||||||| |||| ||| ||||||||||||||| || | Sbjct 27228538 TTGGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCTGGTCCTCTCGTACTAGAGAAA 27228597 Query 130 GCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCT 189 | ||||||||| || |||||||| |||||| ||||||||||||||| ||||||||| Sbjct 27228598 GGTCCTCTCAATGCTCTAACGCCCACACCGGATATGGACCGAACTGTCTCACGACGTTCT 27228657 Query 190 GAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAG 249 ||||||||||| ||| || ||||||||||||||||||||||||||||| || |||| ||| Sbjct 27228658 GAACCCAGCTCACGTACCGCTTTAATGGGCGAACAGCCCAACCCTTGGAACATACTACAG 27228717 Query 250 CCCCAGGATGAGACGAGCCGACATCG 275 | ||||| | || |||||||||||| Sbjct 27228718 CTCCAGGTGGCGAAGAGCCGACATCG 27228743 Score = 154 bits (170), Expect = 2e-35 Identities = 111/128 (87%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 148 ACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCC 207 |||||||| |||||| ||||||||||||||| ||||||||||||||||| || ||| || Sbjct 3504753 ACGCCCACACCGGATATGGACCGAACTGTCTCACGACGTTCTGAACCCAGTTCACGTACC 3504812 Query 208 TCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGC 267 ||||||||||||||||||||||||||||| | |||| |||| ||||| | || |||| Sbjct 3504813 GCTTTAATGGGCGAACAGCCCAACCCTTGGAATATACTACAGCTCCAGGTGGCGAAGAGC 3504872 Query 268 CGACATCG 275 |||||||| Sbjct 3504873 CGACATCG 3504880 >seq41 Length=124265 Score = 196 bits (216), Expect = 8e-48 Identities = 194/251 (77%), Gaps = 4/251 (2%) Strand=Plus/Minus Query 29 CAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCAGTACAACTGGTGC 88 |||| || | || | | |||||||| ||| || ||| |||||| ||||| ||| | Sbjct 8502 CAGCAGTTCTTCCATACCAACTTAGCAGCCCGGCGCTGCTATTGGCATAACAACCGGTAC 8443 Query 89 ACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCT- 147 |||| ||||| | ||| ||| |||||||||||||| || ||||||| || | ||| Sbjct 8442 ACCATAGGTTGGCCCAACCCAGTCCTCTCGTACTAGGGCTGGCTCCTCGCAGTTCTCCCT 8383 Query 148 ---ACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGT 204 || || ||| |||||| ||||||||||||| ||||||||| |||||| ||| ||| Sbjct 8382 TTAACACCAACGGTAGATAGGAACCGAACTGTCTCACGACGTTCTAAACCCAACTCACGT 8323 Query 205 GCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACG 264 || ||| ||| |||||||| || |||||||||||||| ||||| |||||||||| || | Sbjct 8322 ACCACTTGAATCGGCGAACAACCGAACCCTTGGGACCTTCTTCAACCCCAGGATGTGATG 8263 Query 265 AGCCGACATCG 275 || |||||||| Sbjct 8262 AGTCGACATCG 8252 >seq2 Length=45729672 Score = 149 bits (164), Expect = 1e-33 Identities = 173/232 (75%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 45 CAAACTTAGCTTCCCAGC-TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCC 103 || |||||||| |||||| | | | |||||| | |||||| || |||||| ||| Sbjct 33226281 CACACTTAGCTACCCAGCGTTTACCGTTGGCACGATAACTGGCAGACTAGAGGTGCGTCT 33226222 Query 104 ATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATA 163 ||| |||| | |||||||| ||| || ||| ||||| | || |||| || ||| Sbjct 33226221 TTCCTGGTCTTTTCGTACTAGGGAAAGGTCCCCTCAATACTTAAACACCCATACCGAATA 33226162 Query 164 GGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAAC 223 |||| ||||||||| |||||| |||||||||||| ||| || |||||||||||||| Sbjct 33226161 TGGACTAAACTGTCTCATGACGTTATGAACCCAGCTCACGTACCGTTTTAATGGGCGAAC 33226102 Query 224 AGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 | |||||||||||| || |||| || | | ||| | | |||||||| ||| Sbjct 33226101 AACCCAACCCTTGGAACATACTACAACTCTAGGTGGCAAAGAGCCGACGTCG 33226050 Score = 118 bits (130), Expect = 2e-24 Identities = 88/103 (85%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 165 GGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACA 224 ||||||||||||||| |||||||||||||| ||||| || || |||||||||||||||| Sbjct 424731 GGACCGAACTGTCTCACGACGTTCTGAACCGAGCTCACGCACCGCTTTAATGGGCGAACA 424790 Query 225 GCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGC 267 ||||||||||||| || |||| |||| | ||| | || |||| Sbjct 424791 GCCCAACCCTTGGAACATACTACAGCTCTAGGTGGCGAAGAGC 424833 >seq3 Length=55515152 Score = 123 bits (136), Expect = 4e-26 Identities = 106/130 (82%), Gaps = 2/130 (2%) Strand=Plus/Minus Query 148 ACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCC 207 |||||||| |||||| ||||||||||| ||| |||||||||||| ||||||| ||| || Sbjct 39891442 ACGCCCACAGCGGATATGGACCGAACTGCCTCACGACGTTCTGAATCCAGCTCACGTACC 39891383 Query 208 TCTTTAATGGGCGAACAGCCCAACCCTTGGGAC--CTACTTCAGCCCCAGGATGAGACGA 265 ||||||||| ||||| | ||||||||| || |||| |||| ||||| | || || Sbjct 39891382 ACTTTAATGGACGAACGGTCCAACCCTTAAAACATATACTACAGCTCCAGGTGGCGAAGA 39891323 Query 266 GCCGACATCG 275 |||||||||| Sbjct 39891322 GCCGACATCG 39891313 >seq1 Length=52991155 Score = 73.4 bits (80), Expect = 6e-11 Identities = 64/80 (80%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 161 ATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCG 220 ||| ||||||| ||||||||||| ||||||||| |||| | | | ||| ||||| || Sbjct 3524925 ATATGGACCGAGCTGTCTCGCGATGTTCTGAACTTGGCTCACTTACTGCTTAAATGGCCG 3524866 Query 221 AACAGCCCAACCCTTGGGAC 240 |||| ||||| |||||||| Sbjct 3524865 AACAATCCAACGCTTGGGAC 3524846 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780783457532