Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Medicago_20truncatula_20[refseq_20GCF_5F000219495.3_202014-06-18]
2,187 sequences; 412,924,424 total letters
Query= AAMG01001962.1
Length=275
Score E
Sequences producing significant alignments: (Bits) Value
seq2187 268 1e-69
seq4 268 1e-69
seq10 259 8e-67
seq5 241 2e-61
seq7 228 1e-57
seq41 196 8e-48
seq2 149 1e-33
seq3 123 4e-26
seq1 73.4 6e-11
>seq2187
Length=124033
Score = 268 bits (296), Expect = 1e-69
Identities = 224/273 (82%), Gaps = 1/273 (0%)
Strand=Plus/Plus
Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC- 62
|| |||||| ||||||||| |||||| |||||| ||| |||| ||| ||||||
Sbjct 20917 GGTGGGCTTACTACTTAGATGCTTTCAGCAGTTATCCGCTCCGCACTTGGCTACCCAGCG 20976
Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122
| | | |||||| | ||||||| |||||||||| |||| ||||||||||||||||||
Sbjct 20977 TTTACCGTTGGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACT 21036
Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCG 182
| ||| || ||||||||| || |||||||| |||||| ||||||||||||||| ||
Sbjct 21037 AGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCGGATATGGACCGAACTGTCTCACG 21096
Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCT 242
|||||||||||||||||| ||| || ||||||||||||||||||||||||||||| || |
Sbjct 21097 ACGTTCTGAACCCAGCTCACGTACCGCTTTAATGGGCGAACAGCCCAACCCTTGGAACAT 21156
Query 243 ACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275
||| |||| ||||| | || ||||||||||||
Sbjct 21157 ACTACAGCTCCAGGTGGCGAAGAGCCGACATCG 21189
>seq4
Length=56582383
Score = 268 bits (296), Expect = 1e-69
Identities = 224/273 (82%), Gaps = 1/273 (0%)
Strand=Plus/Minus
Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC- 62
|| |||||| ||||||||| |||||| |||||| ||| |||| ||| ||||||
Sbjct 495359 GGTGGGCTTACTACTTAGATGCTTTCAGCAGTTATCCGCTCCGCACTTGGCTACCCAGCG 495300
Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122
| | | |||||| | ||||||| |||||||||| |||| ||||||||||||||||||
Sbjct 495299 TTTACCGTTGGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACT 495240
Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCG 182
| ||| || ||||||||| || |||||||| |||||| ||||||||||||||| ||
Sbjct 495239 AGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCGGATATGGACCGAACTGTCTCACG 495180
Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCT 242
|||||||||||||||||| ||| || ||||||||||||||||||||||||||||| || |
Sbjct 495179 ACGTTCTGAACCCAGCTCACGTACCGCTTTAATGGGCGAACAGCCCAACCCTTGGAACAT 495120
Query 243 ACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275
||| |||| ||||| | || ||||||||||||
Sbjct 495119 ACTACAGCTCCAGGTGGCGAAGAGCCGACATCG 495087
Score = 264 bits (292), Expect = 2e-68
Identities = 223/273 (82%), Gaps = 1/273 (0%)
Strand=Plus/Minus
Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC- 62
|| |||||| ||||||||| |||||| |||||| ||| |||| ||| ||||||
Sbjct 18193020 GGTGGGCTTACTACTTAGATGCTTTCAGCAGTTATCCGCTCCGCACTTGGCTACCCAGCG 18192961
Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122
| | | |||||| | ||||||| |||||||||| |||| ||||||||||||||||||
Sbjct 18192960 TTTACCGTTGGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACT 18192901
Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCG 182
| ||| || ||||||||| || |||||||| |||||| ||||||||||||||| ||
Sbjct 18192900 AGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCGGATATGGACCGAACTGTCTCACG 18192841
Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCT 242
|||||||||||||||||| ||| || ||||||||||||||||||||||||||||| | |
Sbjct 18192840 ACGTTCTGAACCCAGCTCACGTACCGCTTTAATGGGCGAACAGCCCAACCCTTGGAATAT 18192781
Query 243 ACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275
||| |||| ||||| | || ||||||||||||
Sbjct 18192780 ACTACAGCTCCAGGTGGCGAAGAGCCGACATCG 18192748
>seq10
Length=496089
Score = 259 bits (286), Expect = 8e-67
Identities = 222/273 (81%), Gaps = 1/273 (0%)
Strand=Plus/Plus
Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC- 62
|| |||||| |||| |||| |||||| |||||| ||| |||| ||| ||||||
Sbjct 182158 GGTGGGCTTACTACTTATATGCTTTCAGCAGTTATCCTCTCCGCACTTGGCTACCCAGCG 182217
Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122
| | | | |||| | ||||||| |||||||||| |||| ||||||||||||||||||
Sbjct 182218 TTTACCGTAGGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACT 182277
Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCG 182
| ||| || ||||||||| || |||||||| |||||| ||||||||||||||| ||
Sbjct 182278 AGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCGGATATGGACCGAACTGTCTCACG 182337
Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCT 242
|||||||||||||||||| ||| || ||||||||||||||||||||||||||||| || |
Sbjct 182338 ACGTTCTGAACCCAGCTCACGTACCGCTTTAATGGGCGAACAGCCCAACCCTTGGAACAT 182397
Query 243 ACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275
||| |||| ||||| | || ||||||||||||
Sbjct 182398 ACTACAGCTCCAGGTGGCGAAGAGCCGACATCG 182430
>seq5
Length=43630510
Score = 241 bits (266), Expect = 2e-61
Identities = 218/273 (80%), Gaps = 1/273 (0%)
Strand=Plus/Minus
Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC- 62
|| |||||| ||||||||| |||||| |||||| ||| |||| ||| ||||||
Sbjct 34660361 GGTGGGCTTACTACTTAGATGCTTTCAGCAGTTATCCGCTCCGCACTTGGCTACCCAGCG 34660302
Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122
| | | |||||| | ||||||| ||||| |||| |||| ||||| ||||||||||||
Sbjct 34660301 TTTACCGTTGGCACGATAACTGGTACACCATAGGTGCGTCCTTCCCGTTCCTCTCGTACT 34660242
Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCG 182
| ||| || ||||||||| || |||||||| || ||| |||| |||||||||| ||
Sbjct 34660241 AGGGAAAGGTCCTCTCAATGGTCTAACGCCCACACCGAATATGGACTGAACTGTCTCACG 34660182
Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCT 242
|||||||| ||||||||| ||| || |||||||||||||||| |||||||||||| || |
Sbjct 34660181 ACGTTCTGTACCCAGCTCACGTACCGCTTTAATGGGCGAACAACCCAACCCTTGGAACAT 34660122
Query 243 ACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275
||| |||| ||||| | || ||||||||||||
Sbjct 34660121 ACTACAGCTCCAGGTGGCGAAGAGCCGACATCG 34660089
Score = 77.0 bits (84), Expect = 5e-12
Identities = 56/65 (86%), Gaps = 0/65 (0%)
Strand=Plus/Plus
Query 211 TTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGA 270
|| || |||||||| || |||||||||||||| ||||| |||||||||| || ||| |||
Sbjct 27338527 TTCATCGGCGAACAACCGAACCCTTGGGACCTTCTTCAACCCCAGGATGTGATGAGTCGA 27338586
Query 271 CATCG 275
|||||
Sbjct 27338587 CATCG 27338591
>seq7
Length=49172423
Score = 228 bits (252), Expect = 1e-57
Identities = 174/206 (84%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 70 TTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACA 129
|||||| | ||||||| |||||||||| |||| ||| ||||||||||||||| || |
Sbjct 27228538 TTGGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCTGGTCCTCTCGTACTAGAGAAA 27228597
Query 130 GCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCT 189
| ||||||||| || |||||||| |||||| ||||||||||||||| |||||||||
Sbjct 27228598 GGTCCTCTCAATGCTCTAACGCCCACACCGGATATGGACCGAACTGTCTCACGACGTTCT 27228657
Query 190 GAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAG 249
||||||||||| ||| || ||||||||||||||||||||||||||||| || |||| |||
Sbjct 27228658 GAACCCAGCTCACGTACCGCTTTAATGGGCGAACAGCCCAACCCTTGGAACATACTACAG 27228717
Query 250 CCCCAGGATGAGACGAGCCGACATCG 275
| ||||| | || ||||||||||||
Sbjct 27228718 CTCCAGGTGGCGAAGAGCCGACATCG 27228743
Score = 154 bits (170), Expect = 2e-35
Identities = 111/128 (87%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 148 ACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCC 207
|||||||| |||||| ||||||||||||||| ||||||||||||||||| || ||| ||
Sbjct 3504753 ACGCCCACACCGGATATGGACCGAACTGTCTCACGACGTTCTGAACCCAGTTCACGTACC 3504812
Query 208 TCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGC 267
||||||||||||||||||||||||||||| | |||| |||| ||||| | || ||||
Sbjct 3504813 GCTTTAATGGGCGAACAGCCCAACCCTTGGAATATACTACAGCTCCAGGTGGCGAAGAGC 3504872
Query 268 CGACATCG 275
||||||||
Sbjct 3504873 CGACATCG 3504880
>seq41
Length=124265
Score = 196 bits (216), Expect = 8e-48
Identities = 194/251 (77%), Gaps = 4/251 (2%)
Strand=Plus/Minus
Query 29 CAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCAGTACAACTGGTGC 88
|||| || | || | | |||||||| ||| || ||| |||||| ||||| ||| |
Sbjct 8502 CAGCAGTTCTTCCATACCAACTTAGCAGCCCGGCGCTGCTATTGGCATAACAACCGGTAC 8443
Query 89 ACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCT- 147
|||| ||||| | ||| ||| |||||||||||||| || ||||||| || | |||
Sbjct 8442 ACCATAGGTTGGCCCAACCCAGTCCTCTCGTACTAGGGCTGGCTCCTCGCAGTTCTCCCT 8383
Query 148 ---ACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGT 204
|| || ||| |||||| ||||||||||||| ||||||||| |||||| ||| |||
Sbjct 8382 TTAACACCAACGGTAGATAGGAACCGAACTGTCTCACGACGTTCTAAACCCAACTCACGT 8323
Query 205 GCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACG 264
|| ||| ||| |||||||| || |||||||||||||| ||||| |||||||||| || |
Sbjct 8322 ACCACTTGAATCGGCGAACAACCGAACCCTTGGGACCTTCTTCAACCCCAGGATGTGATG 8263
Query 265 AGCCGACATCG 275
|| ||||||||
Sbjct 8262 AGTCGACATCG 8252
>seq2
Length=45729672
Score = 149 bits (164), Expect = 1e-33
Identities = 173/232 (75%), Gaps = 1/232 (0%)
Strand=Plus/Minus
Query 45 CAAACTTAGCTTCCCAGC-TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCC 103
|| |||||||| |||||| | | | |||||| | |||||| || |||||| |||
Sbjct 33226281 CACACTTAGCTACCCAGCGTTTACCGTTGGCACGATAACTGGCAGACTAGAGGTGCGTCT 33226222
Query 104 ATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATA 163
||| |||| | |||||||| ||| || ||| ||||| | || |||| || |||
Sbjct 33226221 TTCCTGGTCTTTTCGTACTAGGGAAAGGTCCCCTCAATACTTAAACACCCATACCGAATA 33226162
Query 164 GGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAAC 223
|||| ||||||||| |||||| |||||||||||| ||| || ||||||||||||||
Sbjct 33226161 TGGACTAAACTGTCTCATGACGTTATGAACCCAGCTCACGTACCGTTTTAATGGGCGAAC 33226102
Query 224 AGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275
| |||||||||||| || |||| || | | ||| | | |||||||| |||
Sbjct 33226101 AACCCAACCCTTGGAACATACTACAACTCTAGGTGGCAAAGAGCCGACGTCG 33226050
Score = 118 bits (130), Expect = 2e-24
Identities = 88/103 (85%), Gaps = 0/103 (0%)
Strand=Plus/Plus
Query 165 GGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACA 224
||||||||||||||| |||||||||||||| ||||| || || ||||||||||||||||
Sbjct 424731 GGACCGAACTGTCTCACGACGTTCTGAACCGAGCTCACGCACCGCTTTAATGGGCGAACA 424790
Query 225 GCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGC 267
||||||||||||| || |||| |||| | ||| | || ||||
Sbjct 424791 GCCCAACCCTTGGAACATACTACAGCTCTAGGTGGCGAAGAGC 424833
>seq3
Length=55515152
Score = 123 bits (136), Expect = 4e-26
Identities = 106/130 (82%), Gaps = 2/130 (2%)
Strand=Plus/Minus
Query 148 ACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCC 207
|||||||| |||||| ||||||||||| ||| |||||||||||| ||||||| ||| ||
Sbjct 39891442 ACGCCCACAGCGGATATGGACCGAACTGCCTCACGACGTTCTGAATCCAGCTCACGTACC 39891383
Query 208 TCTTTAATGGGCGAACAGCCCAACCCTTGGGAC--CTACTTCAGCCCCAGGATGAGACGA 265
||||||||| ||||| | ||||||||| || |||| |||| ||||| | || ||
Sbjct 39891382 ACTTTAATGGACGAACGGTCCAACCCTTAAAACATATACTACAGCTCCAGGTGGCGAAGA 39891323
Query 266 GCCGACATCG 275
||||||||||
Sbjct 39891322 GCCGACATCG 39891313
>seq1
Length=52991155
Score = 73.4 bits (80), Expect = 6e-11
Identities = 64/80 (80%), Gaps = 0/80 (0%)
Strand=Plus/Minus
Query 161 ATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCG 220
||| ||||||| ||||||||||| ||||||||| |||| | | | ||| ||||| ||
Sbjct 3524925 ATATGGACCGAGCTGTCTCGCGATGTTCTGAACTTGGCTCACTTACTGCTTAAATGGCCG 3524866
Query 221 AACAGCCCAACCCTTGGGAC 240
|||| ||||| ||||||||
Sbjct 3524865 AACAATCCAACGCTTGGGAC 3524846
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 780783457532
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