Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Medicago_20truncatula_20[refseq_20GCF_5F000219495.3_202014-06-18]
2,187 sequences; 412,924,424 total letters
Query= AAMG01002194.1
Length=319
Score E
Sequences producing significant alignments: (Bits) Value
seq2187 123 5e-26
seq10 123 5e-26
seq4 123 5e-26
seq3 123 5e-26
seq5 114 2e-23
seq41 77.0 6e-12
>seq2187
Length=124033
Score = 123 bits (136), Expect = 5e-26
Identities = 177/245 (72%), Gaps = 11/245 (4%)
Strand=Plus/Minus
Query 8 ATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCG 67
||||||||| ||| ||| | || ||| ||||| ||||||| ||| | ||| ||
Sbjct 23674 ATGGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGTAAGCGACGAAATGCTTCG 23615
Query 68 GGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGG 127
|||||| | ||| | | | |||||| |||| |||||| || |||| ||| |
Sbjct 23614 GGGAGTT-GAAAATAAGCATAGATCCGAGGATTCCCGAATAGGTCAACC------TTTCG 23562
Query 128 GTCATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAA 186
| ||| |||||||| || | | |||| || ||| ||||||||||||||||| |
Sbjct 23561 AAC--TGC-TGCTGAATTCACGAGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTA 23505
Query 187 GTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATG 246
||||| ||||||||||| ||| | ||||||| ||||| ||||||||||||||||
Sbjct 23504 GTAGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAAC 23445
Query 247 AGCCT 251
|||||
Sbjct 23444 AGCCT 23440
>seq10
Length=496089
Score = 123 bits (136), Expect = 5e-26
Identities = 177/245 (72%), Gaps = 11/245 (4%)
Strand=Plus/Minus
Query 8 ATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCG 67
||||||||| ||| ||| | || ||| ||||| ||||||| ||| | ||| ||
Sbjct 184915 ATGGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGTAAGCGACGAAATGCTTCG 184856
Query 68 GGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGG 127
|||||| | ||| | | | |||||| |||| |||||| || |||| ||| |
Sbjct 184855 GGGAGTT-GAAAATAAGCATAGATCCGAGGATTCCCGAATAGGTCAACC------TTTCG 184803
Query 128 GTCATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAA 186
| ||| |||||||| || | | |||| || ||| ||||||||||||||||| |
Sbjct 184802 AAC--TGC-TGCTGAATTCACGAGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTA 184746
Query 187 GTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATG 246
||||| ||||||||||| ||| | ||||||| ||||| ||||||||||||||||
Sbjct 184745 GTAGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAAC 184686
Query 247 AGCCT 251
|||||
Sbjct 184685 AGCCT 184681
>seq4
Length=56582383
Score = 123 bits (136), Expect = 5e-26
Identities = 177/245 (72%), Gaps = 11/245 (4%)
Strand=Plus/Plus
Query 8 ATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCG 67
||||||||| ||| ||| | || ||| ||||| ||||||| ||| | ||| ||
Sbjct 492601 ATGGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGTAAGCGACGAAATGCTTCG 492660
Query 68 GGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGG 127
|||||| | ||| | | | |||||| |||| |||||| || |||| ||| |
Sbjct 492661 GGGAGTT-GAAAATAAGCATAGATCCGAGGATTCCCGAATAGGTCAACC------TTTCG 492713
Query 128 GTCATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAA 186
| ||| |||||||| || | | |||| || ||| ||||||||||||||||| |
Sbjct 492714 AAC--TGC-TGCTGAATTCACGAGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTA 492770
Query 187 GTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATG 246
||||| ||||||||||| ||| | ||||||| ||||| ||||||||||||||||
Sbjct 492771 GTAGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAAC 492830
Query 247 AGCCT 251
|||||
Sbjct 492831 AGCCT 492835
Score = 123 bits (136), Expect = 5e-26
Identities = 177/245 (72%), Gaps = 11/245 (4%)
Strand=Plus/Plus
Query 8 ATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCG 67
||||||||| ||| ||| | || ||| ||||| ||||||| ||| | ||| ||
Sbjct 18190262 ATGGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGTAAGCGACGAAATGCTTCG 18190321
Query 68 GGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGG 127
|||||| | ||| | | | |||||| |||| |||||| || |||| ||| |
Sbjct 18190322 GGGAGTT-GAAAATAAGCATAGATCCGAGGATTCCCGAATAGGTCAACC------TTTCG 18190374
Query 128 GTCATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAA 186
| ||| |||||||| || | | |||| || ||| ||||||||||||||||| |
Sbjct 18190375 AAC--TGC-TGCTGAATTCACGAGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTA 18190431
Query 187 GTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATG 246
||||| ||||||||||| ||| | ||||||| ||||| ||||||||||||||||
Sbjct 18190432 GTAGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAAC 18190491
Query 247 AGCCT 251
|||||
Sbjct 18190492 AGCCT 18190496
>seq3
Length=55515152
Score = 123 bits (136), Expect = 5e-26
Identities = 177/245 (72%), Gaps = 11/245 (4%)
Strand=Plus/Minus
Query 8 ATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCG 67
||||||||| ||| ||| | || ||| ||||| ||||||| ||| | ||| ||
Sbjct 13221574 ATGGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGTAAGCGACGAAATGCTTCG 13221515
Query 68 GGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGG 127
|||||| | ||| | | | |||||| |||| |||||| || |||| ||| |
Sbjct 13221514 GGGAGTT-GAAAATAAGCATAGATCCGAGGATTCCCGAATAGGTCAACC------TTTCG 13221462
Query 128 GTCATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAA 186
| ||| |||||||| || | | |||| || ||| ||||||||||||||||| |
Sbjct 13221461 AAC--TGC-TGCTGAATTCACGAGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTA 13221405
Query 187 GTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATG 246
||||| ||||||||||| ||| | ||||||| ||||| ||||||||||||||||
Sbjct 13221404 GTAGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAAC 13221345
Query 247 AGCCT 251
|||||
Sbjct 13221344 AGCCT 13221340
>seq5
Length=43630510
Score = 114 bits (126), Expect = 2e-23
Identities = 175/245 (71%), Gaps = 11/245 (4%)
Strand=Plus/Plus
Query 8 ATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCG 67
||||||||| ||| ||| | || ||| ||||| ||||||| ||| | ||| ||
Sbjct 34655869 ATGGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGTAAGCGACGAAATGCTTCG 34655928
Query 68 GGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGG 127
|||||| | ||| | | | |||| |||| |||||| || |||| ||| |
Sbjct 34655929 GGGAGTT-GAAAATAAGCATAAATCCAAGGATTCCCGAATAGGTCAACC------TTTCG 34655981
Query 128 GTCATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAA 186
| ||| |||||||| || | | |||| || ||| ||||||||||||||||| |
Sbjct 34655982 AAC--TGC-TGCTGAATTCACGAGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTA 34656038
Query 187 GTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATG 246
||||| ||||||||||| ||| | ||||||| ||||| ||||||||||||||||
Sbjct 34656039 GTAGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAAC 34656098
Query 247 AGCCT 251
|||||
Sbjct 34656099 AGCCT 34656103
>seq41
Length=124265
Score = 77.0 bits (84), Expect = 6e-12
Identities = 63/77 (82%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 169 GCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGT 228
|||||||||||||||| ||||||| ||||| |||||||||||||| || |||||
Sbjct 5661 GCGAACTGAAACATCTTAGTAGCTAAAGGAAGGGAAATCAACCGAGACCCCGTTAGTAGC 5720
Query 229 GGCGAGCGAAATGGGAT 245
||||||||| | ||||
Sbjct 5721 GGCGAGCGAGAGCGGAT 5737
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 918379914592
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |