Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Medicago_20truncatula_20[refseq_20GCF_5F000219495.3_202014-06-18] 2,187 sequences; 412,924,424 total letters Query= AAMG01002194.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value seq2187 123 5e-26 seq10 123 5e-26 seq4 123 5e-26 seq3 123 5e-26 seq5 114 2e-23 seq41 77.0 6e-12 >seq2187 Length=124033 Score = 123 bits (136), Expect = 5e-26 Identities = 177/245 (72%), Gaps = 11/245 (4%) Strand=Plus/Minus Query 8 ATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCG 67 ||||||||| ||| ||| | || ||| ||||| ||||||| ||| | ||| || Sbjct 23674 ATGGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGTAAGCGACGAAATGCTTCG 23615 Query 68 GGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGG 127 |||||| | ||| | | | |||||| |||| |||||| || |||| ||| | Sbjct 23614 GGGAGTT-GAAAATAAGCATAGATCCGAGGATTCCCGAATAGGTCAACC------TTTCG 23562 Query 128 GTCATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAA 186 | ||| |||||||| || | | |||| || ||| ||||||||||||||||| | Sbjct 23561 AAC--TGC-TGCTGAATTCACGAGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTA 23505 Query 187 GTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATG 246 ||||| ||||||||||| ||| | ||||||| ||||| |||||||||||||||| Sbjct 23504 GTAGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAAC 23445 Query 247 AGCCT 251 ||||| Sbjct 23444 AGCCT 23440 >seq10 Length=496089 Score = 123 bits (136), Expect = 5e-26 Identities = 177/245 (72%), Gaps = 11/245 (4%) Strand=Plus/Minus Query 8 ATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCG 67 ||||||||| ||| ||| | || ||| ||||| ||||||| ||| | ||| || Sbjct 184915 ATGGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGTAAGCGACGAAATGCTTCG 184856 Query 68 GGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGG 127 |||||| | ||| | | | |||||| |||| |||||| || |||| ||| | Sbjct 184855 GGGAGTT-GAAAATAAGCATAGATCCGAGGATTCCCGAATAGGTCAACC------TTTCG 184803 Query 128 GTCATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAA 186 | ||| |||||||| || | | |||| || ||| ||||||||||||||||| | Sbjct 184802 AAC--TGC-TGCTGAATTCACGAGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTA 184746 Query 187 GTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATG 246 ||||| ||||||||||| ||| | ||||||| ||||| |||||||||||||||| Sbjct 184745 GTAGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAAC 184686 Query 247 AGCCT 251 ||||| Sbjct 184685 AGCCT 184681 >seq4 Length=56582383 Score = 123 bits (136), Expect = 5e-26 Identities = 177/245 (72%), Gaps = 11/245 (4%) Strand=Plus/Plus Query 8 ATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCG 67 ||||||||| ||| ||| | || ||| ||||| ||||||| ||| | ||| || Sbjct 492601 ATGGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGTAAGCGACGAAATGCTTCG 492660 Query 68 GGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGG 127 |||||| | ||| | | | |||||| |||| |||||| || |||| ||| | Sbjct 492661 GGGAGTT-GAAAATAAGCATAGATCCGAGGATTCCCGAATAGGTCAACC------TTTCG 492713 Query 128 GTCATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAA 186 | ||| |||||||| || | | |||| || ||| ||||||||||||||||| | Sbjct 492714 AAC--TGC-TGCTGAATTCACGAGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTA 492770 Query 187 GTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATG 246 ||||| ||||||||||| ||| | ||||||| ||||| |||||||||||||||| Sbjct 492771 GTAGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAAC 492830 Query 247 AGCCT 251 ||||| Sbjct 492831 AGCCT 492835 Score = 123 bits (136), Expect = 5e-26 Identities = 177/245 (72%), Gaps = 11/245 (4%) Strand=Plus/Plus Query 8 ATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCG 67 ||||||||| ||| ||| | || ||| ||||| ||||||| ||| | ||| || Sbjct 18190262 ATGGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGTAAGCGACGAAATGCTTCG 18190321 Query 68 GGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGG 127 |||||| | ||| | | | |||||| |||| |||||| || |||| ||| | Sbjct 18190322 GGGAGTT-GAAAATAAGCATAGATCCGAGGATTCCCGAATAGGTCAACC------TTTCG 18190374 Query 128 GTCATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAA 186 | ||| |||||||| || | | |||| || ||| ||||||||||||||||| | Sbjct 18190375 AAC--TGC-TGCTGAATTCACGAGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTA 18190431 Query 187 GTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATG 246 ||||| ||||||||||| ||| | ||||||| ||||| |||||||||||||||| Sbjct 18190432 GTAGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAAC 18190491 Query 247 AGCCT 251 ||||| Sbjct 18190492 AGCCT 18190496 >seq3 Length=55515152 Score = 123 bits (136), Expect = 5e-26 Identities = 177/245 (72%), Gaps = 11/245 (4%) Strand=Plus/Minus Query 8 ATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCG 67 ||||||||| ||| ||| | || ||| ||||| ||||||| ||| | ||| || Sbjct 13221574 ATGGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGTAAGCGACGAAATGCTTCG 13221515 Query 68 GGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGG 127 |||||| | ||| | | | |||||| |||| |||||| || |||| ||| | Sbjct 13221514 GGGAGTT-GAAAATAAGCATAGATCCGAGGATTCCCGAATAGGTCAACC------TTTCG 13221462 Query 128 GTCATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAA 186 | ||| |||||||| || | | |||| || ||| ||||||||||||||||| | Sbjct 13221461 AAC--TGC-TGCTGAATTCACGAGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTA 13221405 Query 187 GTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATG 246 ||||| ||||||||||| ||| | ||||||| ||||| |||||||||||||||| Sbjct 13221404 GTAGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAAC 13221345 Query 247 AGCCT 251 ||||| Sbjct 13221344 AGCCT 13221340 >seq5 Length=43630510 Score = 114 bits (126), Expect = 2e-23 Identities = 175/245 (71%), Gaps = 11/245 (4%) Strand=Plus/Plus Query 8 ATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCG 67 ||||||||| ||| ||| | || ||| ||||| ||||||| ||| | ||| || Sbjct 34655869 ATGGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGTAAGCGACGAAATGCTTCG 34655928 Query 68 GGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGG 127 |||||| | ||| | | | |||| |||| |||||| || |||| ||| | Sbjct 34655929 GGGAGTT-GAAAATAAGCATAAATCCAAGGATTCCCGAATAGGTCAACC------TTTCG 34655981 Query 128 GTCATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAA 186 | ||| |||||||| || | | |||| || ||| ||||||||||||||||| | Sbjct 34655982 AAC--TGC-TGCTGAATTCACGAGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTA 34656038 Query 187 GTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATG 246 ||||| ||||||||||| ||| | ||||||| ||||| |||||||||||||||| Sbjct 34656039 GTAGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAAC 34656098 Query 247 AGCCT 251 ||||| Sbjct 34656099 AGCCT 34656103 >seq41 Length=124265 Score = 77.0 bits (84), Expect = 6e-12 Identities = 63/77 (82%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 169 GCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGT 228 |||||||||||||||| ||||||| ||||| |||||||||||||| || ||||| Sbjct 5661 GCGAACTGAAACATCTTAGTAGCTAAAGGAAGGGAAATCAACCGAGACCCCGTTAGTAGC 5720 Query 229 GGCGAGCGAAATGGGAT 245 ||||||||| | |||| Sbjct 5721 GGCGAGCGAGAGCGGAT 5737 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 918379914592