Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Medicago_20truncatula_20[refseq_20GCF_5F000219495.3_202014-06-18] 2,187 sequences; 412,924,424 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq10 118 2e-24 seq41 116 8e-24 seq2187 114 3e-23 seq8 114 3e-23 seq3 114 3e-23 seq2 114 3e-23 >seq10 Length=496089 Score = 118 bits (130), Expect = 2e-24 Identities = 193/279 (69%), Gaps = 18/279 (6%) Strand=Plus/Plus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 |||||||||||| |||||||||||||||||||| | ||| || | Sbjct 188239 GGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCGGATACCGTCAT-----------T 188287 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 | ||| ||| | |||||||||| | | |||||| | || | ||| ||||| Sbjct 188288 G------TTTCTTCTCCAGGAAAAGAAGTTCATGACCCGTAGGCCTTTTA-CCTCCACGC 188340 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | | ||| |||| || ||| |||||| || ||||| |||||||||||||||||| Sbjct 188341 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 188400 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 |||| ||| |||||||||||| ||| ||||| || | ||||||| || | ||| || Sbjct 188401 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 188460 Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 | | | || ||| || || || | || |||| ||||| Sbjct 188461 CATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAAT 188499 >seq41 Length=124265 Score = 116 bits (128), Expect = 8e-24 Identities = 145/199 (73%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 105 CCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCA 164 ||||| || |||||| | | ||||| || | || ||| |||||| |||| ||||| || Sbjct 61012 CCTTCTTCACTCACGCGATATTGCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCA 60953 Query 165 CTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCT 224 |||||||| ||||| ||||| || |||||||||||| ||| ||||| || | ||| Sbjct 60952 CTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCGAA 60893 Query 225 CAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAAC 284 ||| | ||| |||| | |||| ||| ||| ||||| || |||||||||| || Sbjct 60892 AAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCTGACCAACTACCTAATACTAC 60833 Query 285 GCATCCCCATCGTACACCG 303 ||| | |||| ||| || Sbjct 60832 GCAGGCTCATCAAACAGCG 60814 Score = 116 bits (128), Expect = 8e-24 Identities = 145/199 (73%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 105 CCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCA 164 ||||| || |||||| | | ||||| || | || ||| |||||| |||| ||||| || Sbjct 90909 CCTTCTTCACTCACGCGATATTGCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCA 90968 Query 165 CTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCT 224 |||||||| ||||| ||||| || |||||||||||| ||| ||||| || | ||| Sbjct 90969 CTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCGAA 91028 Query 225 CAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAAC 284 ||| | ||| |||| | |||| ||| ||| ||||| || |||||||||| || Sbjct 91029 AAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCTGACCAACTACCTAATACTAC 91088 Query 285 GCATCCCCATCGTACACCG 303 ||| | |||| ||| || Sbjct 91089 GCAGGCTCATCAAACAGCG 91107 >seq2187 Length=124033 Score = 114 bits (126), Expect = 3e-23 Identities = 192/279 (69%), Gaps = 18/279 (6%) Strand=Plus/Plus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 |||||||||||| |||||||||||||||||||| | ||| || | Sbjct 26906 GGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCGGATACCGTCAT-----------T 26954 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 | ||| ||| | |||||||||| | | |||||| | || | ||| ||||| Sbjct 26955 G------TTTCTTCTCCAGGAAAAGAAGTTCATGACCCGTAGGCCTTTTA-CCTCCACGC 27007 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | | ||| |||| || ||| |||||| || ||||| |||||||||||||||||| Sbjct 27008 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 27067 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 |||| ||| || ||||||||| ||| ||||| || | ||||||| || | ||| || Sbjct 27068 GAGTCTGGGCCTTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 27127 Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 | | || ||| || ||||| | || |||| ||||| Sbjct 27128 CACCGCCTTGGTAAGCTATTACCTCACCAACTAGCTAAT 27166 >seq8 Length=45569985 Score = 114 bits (126), Expect = 3e-23 Identities = 192/279 (69%), Gaps = 18/279 (6%) Strand=Plus/Plus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 |||||||||||| |||||||||||||||||||| | ||| || | Sbjct 15006311 GGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCTGGATACCGTCAT-----------T 15006359 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 | ||| ||| | |||||||||| | | |||||| | || | ||| ||||| Sbjct 15006360 G------TTTCTTCTCCAGGAAAAGAAGTTCATGACCCGTAGGCCTTTTA-CCTCCACGC 15006412 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 || | ||| |||| || ||| ||||| || |||||||||||||||||||||||| Sbjct 15006413 GACATTGCTCCATCAGGCTTTCGCGCATTGCGGAAAATTCCTCACTGCTGCCTCCCGTAG 15006472 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 |||| ||| || ||||||||| ||| ||||| || | ||||||| || | ||| || Sbjct 15006473 GAGTCTGGGCCTTGTCTCAGTCCCAGTGTGGATGATCATCCTCTCGGACCAACTACTGAT 15006532 Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 | || ||| || ||||| | || |||| ||||| Sbjct 15006533 CACCACCTTGGTAAGCTATTACCTCACCAACTAGCTAAT 15006571 >seq3 Length=55515152 Score = 114 bits (126), Expect = 3e-23 Identities = 192/279 (69%), Gaps = 18/279 (6%) Strand=Plus/Plus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 |||||||||||| |||||||||||||||||||| | ||| || | Sbjct 13224806 GGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCGGATACCGTCAT-----------T 13224854 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 | ||| ||| | |||||||||| | | |||||| | || | ||| ||||| Sbjct 13224855 G------TTTCTTCTCCAGGAAAAGAAGTTCATGACCCGTAGGCCTTTTA-CCTCCACGC 13224907 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | | ||| |||| || ||| |||||| || ||||| |||||||||||||||||| Sbjct 13224908 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 13224967 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 |||| ||| || ||||||||| ||| ||||| || | ||||||| || | ||| || Sbjct 13224968 GAGTCTGGGCCTTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 13225027 Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 | | || ||| || ||||| | || |||| ||||| Sbjct 13225028 CACCGCCTTGGTAAGCTATTACCTCACCAACTAGCTAAT 13225066 >seq2 Length=45729672 Score = 114 bits (126), Expect = 3e-23 Identities = 192/279 (69%), Gaps = 18/279 (6%) Strand=Plus/Plus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 |||||||||||| |||||||||||||||||||| | ||| || | Sbjct 14465318 GGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCGGATACCGTCAT-----------T 14465366 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 | ||| ||| | |||||||||| | | |||||| | || | ||| ||||| Sbjct 14465367 G------TTTCTTCTCCAGGAAAAGAAGTTCATGACCCGTAGGCCTTTTA-CCTCCACGC 14465419 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | | ||| |||| || ||| |||||| || ||||| |||||||||||||||||| Sbjct 14465420 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 14465479 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 |||| ||| || ||||||||| ||| ||||| || | ||||||| || | ||| || Sbjct 14465480 GAGTCTGGGCCTTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 14465539 Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 | | || ||| || ||||| | || |||| ||||| Sbjct 14465540 CACCGCCTTGGTAAGCTATTACCTCACCAACTAGCTAAT 14465578 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1068776625344