Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Medicago_20truncatula_20[refseq_20GCF_5F000219495.3_202014-06-18]
2,187 sequences; 412,924,424 total letters
Query= AAMG01002223.1
Length=366
Score E
Sequences producing significant alignments: (Bits) Value
seq10 118 2e-24
seq41 116 8e-24
seq2187 114 3e-23
seq8 114 3e-23
seq3 114 3e-23
seq2 114 3e-23
>seq10
Length=496089
Score = 118 bits (130), Expect = 2e-24
Identities = 193/279 (69%), Gaps = 18/279 (6%)
Strand=Plus/Plus
Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60
|||||||||||| |||||||||||||||||||| | ||| || |
Sbjct 188239 GGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCGGATACCGTCAT-----------T 188287
Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120
| ||| ||| | |||||||||| | | |||||| | || | ||| |||||
Sbjct 188288 G------TTTCTTCTCCAGGAAAAGAAGTTCATGACCCGTAGGCCTTTTA-CCTCCACGC 188340
Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180
| | ||| |||| || ||| |||||| || ||||| ||||||||||||||||||
Sbjct 188341 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 188400
Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240
|||| ||| |||||||||||| ||| ||||| || | ||||||| || | ||| ||
Sbjct 188401 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 188460
Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279
| | | || ||| || || || | || |||| |||||
Sbjct 188461 CATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAAT 188499
>seq41
Length=124265
Score = 116 bits (128), Expect = 8e-24
Identities = 145/199 (73%), Gaps = 0/199 (0%)
Strand=Plus/Minus
Query 105 CCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCA 164
||||| || |||||| | | ||||| || | || ||| |||||| |||| ||||| ||
Sbjct 61012 CCTTCTTCACTCACGCGATATTGCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCA 60953
Query 165 CTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCT 224
|||||||| ||||| ||||| || |||||||||||| ||| ||||| || | |||
Sbjct 60952 CTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCGAA 60893
Query 225 CAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAAC 284
||| | ||| |||| | |||| ||| ||| ||||| || |||||||||| ||
Sbjct 60892 AAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCTGACCAACTACCTAATACTAC 60833
Query 285 GCATCCCCATCGTACACCG 303
||| | |||| ||| ||
Sbjct 60832 GCAGGCTCATCAAACAGCG 60814
Score = 116 bits (128), Expect = 8e-24
Identities = 145/199 (73%), Gaps = 0/199 (0%)
Strand=Plus/Plus
Query 105 CCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCA 164
||||| || |||||| | | ||||| || | || ||| |||||| |||| ||||| ||
Sbjct 90909 CCTTCTTCACTCACGCGATATTGCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCA 90968
Query 165 CTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCT 224
|||||||| ||||| ||||| || |||||||||||| ||| ||||| || | |||
Sbjct 90969 CTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCGAA 91028
Query 225 CAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAAC 284
||| | ||| |||| | |||| ||| ||| ||||| || |||||||||| ||
Sbjct 91029 AAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCTGACCAACTACCTAATACTAC 91088
Query 285 GCATCCCCATCGTACACCG 303
||| | |||| ||| ||
Sbjct 91089 GCAGGCTCATCAAACAGCG 91107
>seq2187
Length=124033
Score = 114 bits (126), Expect = 3e-23
Identities = 192/279 (69%), Gaps = 18/279 (6%)
Strand=Plus/Plus
Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60
|||||||||||| |||||||||||||||||||| | ||| || |
Sbjct 26906 GGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCGGATACCGTCAT-----------T 26954
Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120
| ||| ||| | |||||||||| | | |||||| | || | ||| |||||
Sbjct 26955 G------TTTCTTCTCCAGGAAAAGAAGTTCATGACCCGTAGGCCTTTTA-CCTCCACGC 27007
Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180
| | ||| |||| || ||| |||||| || ||||| ||||||||||||||||||
Sbjct 27008 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 27067
Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240
|||| ||| || ||||||||| ||| ||||| || | ||||||| || | ||| ||
Sbjct 27068 GAGTCTGGGCCTTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 27127
Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279
| | || ||| || ||||| | || |||| |||||
Sbjct 27128 CACCGCCTTGGTAAGCTATTACCTCACCAACTAGCTAAT 27166
>seq8
Length=45569985
Score = 114 bits (126), Expect = 3e-23
Identities = 192/279 (69%), Gaps = 18/279 (6%)
Strand=Plus/Plus
Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60
|||||||||||| |||||||||||||||||||| | ||| || |
Sbjct 15006311 GGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCTGGATACCGTCAT-----------T 15006359
Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120
| ||| ||| | |||||||||| | | |||||| | || | ||| |||||
Sbjct 15006360 G------TTTCTTCTCCAGGAAAAGAAGTTCATGACCCGTAGGCCTTTTA-CCTCCACGC 15006412
Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180
|| | ||| |||| || ||| ||||| || ||||||||||||||||||||||||
Sbjct 15006413 GACATTGCTCCATCAGGCTTTCGCGCATTGCGGAAAATTCCTCACTGCTGCCTCCCGTAG 15006472
Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240
|||| ||| || ||||||||| ||| ||||| || | ||||||| || | ||| ||
Sbjct 15006473 GAGTCTGGGCCTTGTCTCAGTCCCAGTGTGGATGATCATCCTCTCGGACCAACTACTGAT 15006532
Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279
| || ||| || ||||| | || |||| |||||
Sbjct 15006533 CACCACCTTGGTAAGCTATTACCTCACCAACTAGCTAAT 15006571
>seq3
Length=55515152
Score = 114 bits (126), Expect = 3e-23
Identities = 192/279 (69%), Gaps = 18/279 (6%)
Strand=Plus/Plus
Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60
|||||||||||| |||||||||||||||||||| | ||| || |
Sbjct 13224806 GGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCGGATACCGTCAT-----------T 13224854
Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120
| ||| ||| | |||||||||| | | |||||| | || | ||| |||||
Sbjct 13224855 G------TTTCTTCTCCAGGAAAAGAAGTTCATGACCCGTAGGCCTTTTA-CCTCCACGC 13224907
Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180
| | ||| |||| || ||| |||||| || ||||| ||||||||||||||||||
Sbjct 13224908 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 13224967
Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240
|||| ||| || ||||||||| ||| ||||| || | ||||||| || | ||| ||
Sbjct 13224968 GAGTCTGGGCCTTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 13225027
Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279
| | || ||| || ||||| | || |||| |||||
Sbjct 13225028 CACCGCCTTGGTAAGCTATTACCTCACCAACTAGCTAAT 13225066
>seq2
Length=45729672
Score = 114 bits (126), Expect = 3e-23
Identities = 192/279 (69%), Gaps = 18/279 (6%)
Strand=Plus/Plus
Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60
|||||||||||| |||||||||||||||||||| | ||| || |
Sbjct 14465318 GGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCGGATACCGTCAT-----------T 14465366
Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120
| ||| ||| | |||||||||| | | |||||| | || | ||| |||||
Sbjct 14465367 G------TTTCTTCTCCAGGAAAAGAAGTTCATGACCCGTAGGCCTTTTA-CCTCCACGC 14465419
Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180
| | ||| |||| || ||| |||||| || ||||| ||||||||||||||||||
Sbjct 14465420 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 14465479
Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240
|||| ||| || ||||||||| ||| ||||| || | ||||||| || | ||| ||
Sbjct 14465480 GAGTCTGGGCCTTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 14465539
Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279
| | || ||| || ||||| | || |||| |||||
Sbjct 14465540 CACCGCCTTGGTAAGCTATTACCTCACCAACTAGCTAAT 14465578
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1068776625344
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |