Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Medicago_20truncatula_20[refseq_20GCF_5F000219495.3_202014-06-18] 2,187 sequences; 412,924,424 total letters Query= NC_029107.1 Length=41941 Score E Sequences producing significant alignments: (Bits) Value seq1420 125 2e-24 seq1401 109 1e-19 >seq1420 Length=1851 Score = 125 bits (138), Expect = 2e-24 Identities = 192/274 (70%), Gaps = 0/274 (0%) Strand=Plus/Plus Query 9210 GTTTGACGAGCGTCTGCAGGCCGCCAAGACCATCATTGACGACCTGATGACCGAGTGGAC 9269 ||| || || || |||||||| ||||| |||| || ||||| | ||| ||||| Sbjct 46 GTTCGATGAACGCCTGCAGGCGGCCAAATCCATGATCGACGAGTGTCTTCGCGACTGGAC 105 Query 9270 AGAGGGATCGCGCCCCGAAATCAAGGCCATCATCCAGCGCGCTTTCGACACCGACAAAGA 9329 || | ||||| || || |||| ||| | || || || | |||||||| || Sbjct 106 TCTGGATGCCCGCCCTGAGATTCAGGCGATCGTGACGCAGGCGTTTGCGACCGACAAGGA 165 Query 9330 GGGCAACTTGAACACCGGCCGCGTGCTGTCGCTGCGCAGTCTGGACATCAAGGATGCGCG 9389 ||| | | ||||||||||||||||| ||||||| | ||||||||| ||| |||| Sbjct 166 AGGCCAAATCAACACCGGCCGCGTGCTCGCGCTGCGTCGATTGGACATCACCGATCCGCG 225 Query 9390 TTGGCAGCAGGCGATGACCGCGATTGGCGACAGCGTCCAGGTCGTGGGCACCAAGAGCTA 9449 |||| | | |||||| ||||| ||||| | | ||||| | |||| |||| || Sbjct 226 CTGGCTGGAAGCGATGCGGGCGATCGGCGAAGCCCTGCAGGTGATCGGCAGCAAGTCATA 285 Query 9450 CGTGCGCTTCTATGAGCGCATCGAGGGCACGGAC 9483 ||| ||| |||| |||||| ||| | ||||||| Sbjct 286 CGTCCGCGTCTACGAGCGCGTCGGCGACACGGAC 319 >seq1401 Length=1891 Score = 109 bits (120), Expect = 1e-19 Identities = 281/420 (67%), Gaps = 20/420 (5%) Strand=Plus/Plus Query 9079 GACTTCCAGGCGTTCGTC-AAGCTGTCAGC--CGAGGAGTACGGCGTCCAGCGCGGCGGC 9135 ||| || ||||||||| |||| |||| |||| ||||||||||| || ||||||| Sbjct 315 GACATCGCGGCGTTCGTTGAAGC---CAGCAACGAGCAGTACGGCGTCAAGATCGGCGGC 371 Query 9136 AGCAAAGGCAACGTGACCCTCCACAGCTTCGACGGCCGTTACAAGGTC---CGACTGGCC 9192 | ||| |||||| | || ||| | ||||||||| ||||||||| |||| | | Sbjct 372 ACCAAGGGCAACATCACGCTCGTGTCATACGACGGCCGCTACAAGGTCGTGCGACAGATC 431 Query 9193 CATGCCGACACCATGAAGTTTGACGAGCGTCTGCAGGCCGCCAA-GACCATCATTGACGA 9251 ||||| || |||| | ||||| |||||||| ||||| || | | || ||| | Sbjct 432 ---GCCGAGCGGATCCAGTTCGGCGAGCAGCTGCAGGCGGCCAAAGAAC-TGATCGACCA 487 Query 9252 CCTGATGACCGAGTGGACAGAGGGATCGCGCCCCGAAA---TCAAGGCCATCATCCAGCG 9308 || ||| ||| | |||| || ||| | |||||| | || | Sbjct 488 GTGCATCGTCGAATGGTCGCAGGGCA---GCAACGACAACCTCAAGGTTCTGGTCAACGA 544 Query 9309 CGCTTTCGACACCGACAAAGAGGGCAACTTGAACACCGGCCGCGTGCTGTCGCTGCGCAG 9368 || ||| | |||||| ||||||||| ||||||| ||||||||||| |||||| | Sbjct 545 AGCGTTCCAGGTCGACAAGGAGGGCAACGTGAACACGGGCCGCGTGCTCGGCCTGCGCCG 604 Query 9369 TCTGGACATCAAGGATGCGCGTTGGCAGCAGGCGATGACCGCGATTGGCGACAGCGTCCA 9428 || ||||||||||| ||| || ||| ||| ||||| |||||| | | Sbjct 605 CTACGAGATCAAGGATGCCAAGTGGAAGACGGCAATGGAGGCGATCTCGGACAGCATTCG 664 Query 9429 GGTCGTGGGCACCAAGAGCTACGTGCGCTTCTATGAGCGCATCGAGGGCACGGACGAGTA 9488 || |||| |||| |||||||| | || |||||||||| | || |||||||| Sbjct 665 CGTTACCGGCAGCAAGCCGTACGTGCGGCTGTACGAGCGCATCGGCGACAGCGACGAGTA 724 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 134086117609282