Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mentha_20longifolia_20[genbank_20GCA_5F001642375.1_202016-05-11] 190,876 sequences; 353,287,234 total letters Query= AAMG01000140.1 Length=336 Score E Sequences producing significant alignments: (Bits) Value seq94189 266 6e-69 seq65691 194 3e-47 seq3962 86.0 1e-14 seq21829 78.8 2e-12 >seq94189 Length=471 Score = 266 bits (294), Expect = 6e-69 Identities = 259/328 (79%), Gaps = 4/328 (1%) Strand=Plus/Plus Query 11 AGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATT-C 69 || || |||||| ||| |||||| ||| | || ||||||| || ||| | || | | | Sbjct 34 AGCGGAGTGAAA-AGAACCTGAAACCGTGTGCTTACAAGCAGTTAGAGGGGTGTCAATAC 92 Query 70 GGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAG 129 ||| |||||||||||||||||||||||||||||||| || |||| || |||||||| Sbjct 93 CCTGATAGCGTGCCTTTTGCATAATGAGCCTACGAGTTACTCCTCACTGGCAAGGTTAAG 152 Query 130 GGCTTC-AGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGC 188 | || | | || ||||| || ||||||||| || || |||||| ||| |||| Sbjct 153 TGATTTGAATCACGC-AGCCGCAGCGAAAGCGAGTCTGAATAGGGCGCGTAGTCAGTGGG 211 Query 189 GCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGAT 248 | |||||||||||||| |||| |||||| ||||||| ||||| |||||||| || | Sbjct 212 GGTAGACGCGAAACCTAGTGAGCTACCCTTGAGCAGGATGAAGGAGCGGTAACACGCTGT 271 Query 249 GGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAG 308 ||||| ||||||| || |||||||||| || |||||||| | ||||||||||||||| Sbjct 272 GGAGGTCCGAACCAGTTTCCGTTGAAAAGGATTTGGATGACTTGAGGGTAGGGGTGAAAG 331 Query 309 GCCAATCAAACTGGGAAATAGCTCGTAC 336 |||||||||||| ||||||||||||||| Sbjct 332 GCCAATCAAACTAGGAAATAGCTCGTAC 359 >seq65691 Length=666 Score = 194 bits (214), Expect = 3e-47 Identities = 248/338 (73%), Gaps = 14/338 (4%) Strand=Plus/Minus Query 4 CCCGAGCAGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAG 63 ||||| ||||| |||||| || |||||| ||| || ||||| | || ||||| | Sbjct 402 CCCGACGAGGGGAGTGAAACAGTTCCTGAAACCGGATGCTTACAAACAGTGGGAGCTCAA 343 Query 64 TGATTCG------GTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACC 117 | |||| ||||| |||| ||||||| |||||| | | ||| ||| || || Sbjct 342 GG-TTCGTCCTGAGTGACCGCGTACCTTTTGTATAATGGGTCAGCGACTTAAA-GTTACG 285 Query 118 AGCGAGGTTAAGGGCTTCAGGCCCGT-TAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGA 176 ||| || ||||| | || || ||| || || ||||||||| || ||||||||| Sbjct 284 AGCAAGCTTAAG-----CCGGTAGGTGTAGGCGCAGCGAAAGCGAGTCTGAACAGGGCGT 230 Query 177 CGAGTTGGTGGCGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCG 236 |||| ||||| ||||| ||||||| |||||||| ||| | ||||| ||||| | | Sbjct 229 TCAGTTCGTGGCTTTAGACCCGAAACCGAGTGATCTAGCCATGTGCAGGATGAAGGTGGG 170 Query 237 GTAACGCGTGATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGG 296 ||||| | |||||| ||||||| || |||||||||| | | ||||||| | || Sbjct 169 GTAACACCCACTGGAGGTCCGAACCAGTGCCCGTTGAAAAGGTCTTGGATGACGTGTGGC 110 Query 297 TAGGGGTGAAAGGCCAATCAAACTGGGAAATAGCTCGT 334 |||||||||||||||||||||||| |||||||||| || Sbjct 109 TAGGGGTGAAAGGCCAATCAAACTCGGAAATAGCTGGT 72 >seq3962 Length=38492 Score = 86.0 bits (94), Expect = 1e-14 Identities = 209/310 (67%), Gaps = 10/310 (3%) Strand=Plus/Plus Query 12 GGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCG--AGTGATTC 69 |||| |||||||||| | |||| ||| || ||||| || |||| | || | | Sbjct 32535 GGGGAGTGAAATAGAACATGAAACCGTAAGCTCCCAAGCAGTGGGAGGGGCCAGGGCTC- 32593 Query 70 GGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAG 129 |||| |||||||| ||| | |||||||| ||| | | | | || || ||||||| Sbjct 32594 --TGACCGCGTGCCTGTTGAAGAATGAGCCGGCGACTCA-TAGGCAGTGGCTTGGTTAAG 32650 Query 130 GGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCG 189 || | ||| ||||| || ||||||||| ||| | ||||| | || || | Sbjct 32651 GGAACCCA--CCGG-AGCCGTAGCGAAAGCGAGTCTTCATAGGGCAATT-GTCACTGCCT 32706 Query 190 CTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATG 249 | ||| |||| | |||||||| ||| || |||| ||||| ||| | | || Sbjct 32707 ATGGACCCGAACCTGGGTGATCTATCCATGACCAGGATGAAGCTTGGGTGAAACTAAGTG 32766 Query 250 GAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGG 309 |||| |||||||| | |||||| | | ||||||| | | || ||||||||||| | Sbjct 32767 GAGGTCCGAACCGACTGATGTTGAAGAATCAGCGGATGAGTTGTGGTTAGGGGTGAAATG 32826 Query 310 CCAATCAAAC 319 ||| || ||| Sbjct 32827 CCACTCGAAC 32836 >seq21829 Length=24115 Score = 78.8 bits (86), Expect = 2e-12 Identities = 104/143 (73%), Gaps = 1/143 (1%) Strand=Plus/Plus Query 193 GACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTC-GCGGTAACGCGTGATGGA 251 ||| ||||||| |||||| ||| ||||||||||||| || |||| | |||| Sbjct 19871 GACCCGAAACCGATCGATCTAGCCATGAGCAGGTTGAAGAGAGCTCTAACAGGCCTTGGA 19930 Query 252 GGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGCC 311 |||||||||| | || | ||| | |||||||| | || ||||||||||||||| Sbjct 19931 GGACCGAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGGCTAGGGGTGAAAGGCC 19990 Query 312 AATCAAACTGGGAAATAGCTCGT 334 || ||| | ||| |||||| || Sbjct 19991 AACCAAGATCGGATATAGCTGGT 20013 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 970943158272