Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Mentha_20longifolia_20[genbank_20GCA_5F001642375.1_202016-05-11]
190,876 sequences; 353,287,234 total letters
Query= AAMG01000140.1
Length=336
Score E
Sequences producing significant alignments: (Bits) Value
seq94189 266 6e-69
seq65691 194 3e-47
seq3962 86.0 1e-14
seq21829 78.8 2e-12
>seq94189
Length=471
Score = 266 bits (294), Expect = 6e-69
Identities = 259/328 (79%), Gaps = 4/328 (1%)
Strand=Plus/Plus
Query 11 AGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATT-C 69
|| || |||||| ||| |||||| ||| | || ||||||| || ||| | || | | |
Sbjct 34 AGCGGAGTGAAA-AGAACCTGAAACCGTGTGCTTACAAGCAGTTAGAGGGGTGTCAATAC 92
Query 70 GGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAG 129
||| |||||||||||||||||||||||||||||||| || |||| || ||||||||
Sbjct 93 CCTGATAGCGTGCCTTTTGCATAATGAGCCTACGAGTTACTCCTCACTGGCAAGGTTAAG 152
Query 130 GGCTTC-AGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGC 188
| || | | || ||||| || ||||||||| || || |||||| ||| ||||
Sbjct 153 TGATTTGAATCACGC-AGCCGCAGCGAAAGCGAGTCTGAATAGGGCGCGTAGTCAGTGGG 211
Query 189 GCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGAT 248
| |||||||||||||| |||| |||||| ||||||| ||||| |||||||| || |
Sbjct 212 GGTAGACGCGAAACCTAGTGAGCTACCCTTGAGCAGGATGAAGGAGCGGTAACACGCTGT 271
Query 249 GGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAG 308
||||| ||||||| || |||||||||| || |||||||| | |||||||||||||||
Sbjct 272 GGAGGTCCGAACCAGTTTCCGTTGAAAAGGATTTGGATGACTTGAGGGTAGGGGTGAAAG 331
Query 309 GCCAATCAAACTGGGAAATAGCTCGTAC 336
|||||||||||| |||||||||||||||
Sbjct 332 GCCAATCAAACTAGGAAATAGCTCGTAC 359
>seq65691
Length=666
Score = 194 bits (214), Expect = 3e-47
Identities = 248/338 (73%), Gaps = 14/338 (4%)
Strand=Plus/Minus
Query 4 CCCGAGCAGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAG 63
||||| ||||| |||||| || |||||| ||| || ||||| | || ||||| |
Sbjct 402 CCCGACGAGGGGAGTGAAACAGTTCCTGAAACCGGATGCTTACAAACAGTGGGAGCTCAA 343
Query 64 TGATTCG------GTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACC 117
| |||| ||||| |||| ||||||| |||||| | | ||| ||| || ||
Sbjct 342 GG-TTCGTCCTGAGTGACCGCGTACCTTTTGTATAATGGGTCAGCGACTTAAA-GTTACG 285
Query 118 AGCGAGGTTAAGGGCTTCAGGCCCGT-TAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGA 176
||| || ||||| | || || ||| || || ||||||||| || |||||||||
Sbjct 284 AGCAAGCTTAAG-----CCGGTAGGTGTAGGCGCAGCGAAAGCGAGTCTGAACAGGGCGT 230
Query 177 CGAGTTGGTGGCGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCG 236
|||| ||||| ||||| ||||||| |||||||| ||| | ||||| ||||| | |
Sbjct 229 TCAGTTCGTGGCTTTAGACCCGAAACCGAGTGATCTAGCCATGTGCAGGATGAAGGTGGG 170
Query 237 GTAACGCGTGATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGG 296
||||| | |||||| ||||||| || |||||||||| | | ||||||| | ||
Sbjct 169 GTAACACCCACTGGAGGTCCGAACCAGTGCCCGTTGAAAAGGTCTTGGATGACGTGTGGC 110
Query 297 TAGGGGTGAAAGGCCAATCAAACTGGGAAATAGCTCGT 334
|||||||||||||||||||||||| |||||||||| ||
Sbjct 109 TAGGGGTGAAAGGCCAATCAAACTCGGAAATAGCTGGT 72
>seq3962
Length=38492
Score = 86.0 bits (94), Expect = 1e-14
Identities = 209/310 (67%), Gaps = 10/310 (3%)
Strand=Plus/Plus
Query 12 GGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCG--AGTGATTC 69
|||| |||||||||| | |||| ||| || ||||| || |||| | || | |
Sbjct 32535 GGGGAGTGAAATAGAACATGAAACCGTAAGCTCCCAAGCAGTGGGAGGGGCCAGGGCTC- 32593
Query 70 GGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAG 129
|||| |||||||| ||| | |||||||| ||| | | | | || || |||||||
Sbjct 32594 --TGACCGCGTGCCTGTTGAAGAATGAGCCGGCGACTCA-TAGGCAGTGGCTTGGTTAAG 32650
Query 130 GGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCG 189
|| | ||| ||||| || ||||||||| ||| | ||||| | || || |
Sbjct 32651 GGAACCCA--CCGG-AGCCGTAGCGAAAGCGAGTCTTCATAGGGCAATT-GTCACTGCCT 32706
Query 190 CTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATG 249
| ||| |||| | |||||||| ||| || |||| ||||| ||| | | ||
Sbjct 32707 ATGGACCCGAACCTGGGTGATCTATCCATGACCAGGATGAAGCTTGGGTGAAACTAAGTG 32766
Query 250 GAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGG 309
|||| |||||||| | |||||| | | ||||||| | | || ||||||||||| |
Sbjct 32767 GAGGTCCGAACCGACTGATGTTGAAGAATCAGCGGATGAGTTGTGGTTAGGGGTGAAATG 32826
Query 310 CCAATCAAAC 319
||| || |||
Sbjct 32827 CCACTCGAAC 32836
>seq21829
Length=24115
Score = 78.8 bits (86), Expect = 2e-12
Identities = 104/143 (73%), Gaps = 1/143 (1%)
Strand=Plus/Plus
Query 193 GACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTC-GCGGTAACGCGTGATGGA 251
||| ||||||| |||||| ||| ||||||||||||| || |||| | ||||
Sbjct 19871 GACCCGAAACCGATCGATCTAGCCATGAGCAGGTTGAAGAGAGCTCTAACAGGCCTTGGA 19930
Query 252 GGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGCC 311
|||||||||| | || | ||| | |||||||| | || |||||||||||||||
Sbjct 19931 GGACCGAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGGCTAGGGGTGAAAGGCC 19990
Query 312 AATCAAACTGGGAAATAGCTCGT 334
|| ||| | ||| |||||| ||
Sbjct 19991 AACCAAGATCGGATATAGCTGGT 20013
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 970943158272
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |