Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mentha_20longifolia_20[genbank_20GCA_5F001642375.1_202016-05-11] 190,876 sequences; 353,287,234 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq618 401 9e-110 seq3688 365 7e-99 seq9685 127 3e-27 seq137676 125 1e-26 >seq618 Length=12052 Score = 401 bits (444), Expect = 9e-110 Identities = 245/256 (96%), Gaps = 3/256 (1%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | Sbjct 1806 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 1749 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1748 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 1689 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||||| |||||||||||||| ||| |||||||||||||||||||||||||||||||||| Sbjct 1688 CCCGGGCCTGTCGGCCAAGGCTATAAACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 1629 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1628 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGCGGCCTAAAAG 1569 Query 241 GCCAT-CTCCCTCGAA 255 ||| | |||||| || Sbjct 1568 GCCGTAGTCCCTCTAA 1553 >seq3688 Length=5029 Score = 365 bits (404), Expect = 7e-99 Identities = 228/241 (95%), Gaps = 3/241 (1%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| | Sbjct 4629 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCATACTAGGAATT-C 4686 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4687 CTTGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 4746 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||||| |||||||||||||| ||| |||||||||||||||||||||||||||||||||| Sbjct 4747 CCCGGGCCTGTCGGCCAAGGCTATAAACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 4806 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240 |||||||||| ||||||||||| ||||||||||||||||||||||||| | |||||||| Sbjct 4807 CCCAGAACAT-TAAGGGCATCATAGACCTGTTATTGCCTCAAACTTCCACGACCTAAAAG 4865 Query 241 G 241 | Sbjct 4866 G 4866 >seq9685 Length=2322 Score = 127 bits (140), Expect = 3e-27 Identities = 204/274 (74%), Gaps = 38/274 (14%) Strand=Plus/Plus Query 1 GTACAA-AGGGCAG-GGACGTAGTC--AACGCGAGCTTGATGACTCG-CGCTTACTAGGA 55 |||||| ||||||| |||||||||| ||||||||| ||||||||| ||||| ||| Sbjct 703 GTACAAGAGGGCAGCGGACGTAGTCCAAACGCGAGC--GATGACTCGGCGCTTTACAGGC 760 Query 56 ATTTCCTCGTTGA-AGACCAACAATTGCAATGATCTA---TCCCCATCACGATGAAATT- 110 |||| |||| || |||||||||||| ||| ||||||||||||||||||| Sbjct 761 --TTCCCGTTTGACAGCCCAACAATTGCAGCTCGCTACACTCCCCATCACGATGAAATTC 818 Query 111 TCAAA-GATTACCC--GGACCTGTCGGCCAA--GGTGATAGAC--TCGTTGAATACATCA 163 ||||| |||||||| || ||||||||||| || ||| || ||||||| ||||||| Sbjct 819 TCAAAAGATTACCCCGGGCGCTGTCGGCCAACCGGCTATAAACCCTCGTTGACTACATCA 878 Query 164 GTGTAG-CGCGC-GT--GCGGCCCAGAACATCTAAGGGCATCAC-----AGACCTGTTAT 214 |||||| ||||| || ||||| | || ||||| ||||| || |||||||| Sbjct 879 GTGTAGCCGCGCAGTCGGCGGCACGACACTCGTAAGGCAATCACACCAGAGCCCTGTTAT 938 Query 215 ------TGCCTCAAACTTCC--GTGGCCTAAAAG 240 ||||||||||||| |||||||||| Sbjct 939 GGGGGGGGCCTCAAACTTCCCGCGGGCCTAAAAG 972 >seq137676 Length=979 Score = 125 bits (138), Expect = 1e-26 Identities = 74/77 (96%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 169 GCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 902 GCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 961 Query 229 GTGGCCTAAAAGGCCAT 245 ||||||| | |||||| Sbjct 962 ATGGCCTAGACGGCCAT 978 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 750609468340