Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mentha_20longifolia_20[genbank_20GCA_5F001642375.1_202016-05-11] 190,876 sequences; 353,287,234 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq618 221 2e-55 seq153850 199 7e-49 seq117838 174 3e-41 >seq618 Length=12052 Score = 221 bits (244), Expect = 2e-55 Identities = 200/248 (81%), Gaps = 3/248 (1%) Strand=Plus/Plus Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCAT 130 || |||||||||| ||||||||||| |||||||| |||| |||| | |||||||||||| Sbjct 913 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGGATACATTAGCAT 972 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190 || |||| | |||||| | |||| ||||| ||||| | ||| || |||||||| Sbjct 973 GGGATAACATTATAGGATTT-CGGTCCTATTACGTTGGCCTTCGGGATCGGAGTAATGAT 1031 Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250 ||| ||||| || || ||| | ||||| || |||||||||||||||||||||||||| Sbjct 1032 TAACAGGGACAGCCGTGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTAT 1091 Query 251 TGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAA 310 ||||| ||| ||||||||||| || ||||| |||||||||||||||| |||||||| Sbjct 1092 GAAAGACGAACAACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCA-AGAACGAAA 1150 Query 311 GTTAGGGG 318 ||| |||| Sbjct 1151 GTTGGGGG 1158 Score = 165 bits (182), Expect = 1e-38 Identities = 158/200 (79%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 119 ATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGAC 178 |||||||||||||| ||| | |||||| | |||| ||||| ||||| | ||| Sbjct 9338 ATACATTAGCATGGGATAGCATTATAGGATTT-CGGTCCTATTACGTTGGCCTTCGGGAT 9396 Query 179 CGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAAT 238 || ||||||||||| ||||| || || ||| | ||||| || |||||||||||||| Sbjct 9397 CGGAGTAATGATTAACAGGGACAGCCGTGGGCATTTGTATTTCATAGTCAGAGGTGAAAT 9456 Query 239 TCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAAT 298 |||||||||||| || || ||| ||||||||||| || ||||| |||||||||||||| Sbjct 9457 TCTTGGATTTATGAAAAACGAACAACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAAT 9516 Query 299 CAGTGAACGAAAGTTAGGGG 318 || ||||||||||| |||| Sbjct 9517 CA-AGAACGAAAGTTGGGGG 9535 >seq153850 Length=5434 Score = 199 bits (220), Expect = 7e-49 Identities = 199/249 (80%), Gaps = 7/249 (3%) Strand=Plus/Minus Query 72 CTTTTACTTTGAAAAAATTAGAGTGT-TCAAAGCAGGCCTTTGCTC-GAATACATTAGCA 129 || |||||||||| ||||||||||| |||||||| |||| |||| | ||||||||||| Sbjct 420 CTGTTACTTTGAAGAAATTAGAGTGGCTCAAAGCAAGCCTACGCTCTGGATACATTAGCA 361 Query 130 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGA 189 ||| |||| | |||||| | |||| ||||| ||||| | ||| || ||||||| Sbjct 360 TGGGATAACATTATAGGATTT-CGGTCCTATTACGTTGGCCTTCGGGATCGGAGTAATGA 302 Query 190 TTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTA 249 |||| ||||| | || ||| | ||||||| | |||| |||||||||||||||||||| Sbjct 301 TTAACAGGGACAC-CGTGGGCATTCGTATTCA-TAGTCACAGGTGAAATTCTTGGATTTA 244 Query 250 TTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAA 309 | ||||| ||| ||||||||||| || ||||| |||||||||||||||| ||||||| Sbjct 243 TGAAAGAC-AACAACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCA-AGAACGAA 186 Query 310 AGTTAGGGG 318 |||| |||| Sbjct 185 AGTTGGGGG 177 >seq117838 Length=963 Score = 174 bits (192), Expect = 3e-41 Identities = 200/253 (79%), Gaps = 12/253 (5%) Strand=Plus/Minus Query 72 CTTTTACTTTGAAAAAATTAGAG-TG-TTCAAAGCAGGCCTTTGCTC-GAATACATTAGC 128 || |||||||||| ||||||||| || ||||||||| |||| |||| | |||||||||| Sbjct 296 CTGTTACTTTGAAGAAATTAGAGCTGCTTCAAAGCAAGCCTACGCTCTGGATACATTAGC 237 Query 129 ATGGAATA-ATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAAT 187 |||| | | | | |||||| | |||| ||||| |||| ||| ||| || ||||| Sbjct 236 ATGGGAAACACATTATAGGATTT-CGGTCCTATTACGTTGCGTTCG-GGATCGGAGTAAT 179 Query 188 GATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATT 247 |||||| ||||| || || ||| | ||||||| | |||||||||||| |||||||||| Sbjct 178 GATTAACAGGGACAGCCGTGGGCATTCGTATTCA-TAGTCAGAGGTGAA-TTCTTGGATT 121 Query 248 TATTGAAG-ACTAA-CTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAA 305 || ||| || || | ||||||||||| || ||||| |||||||||||||||| ||| Sbjct 120 -ATGAAAGGACGAAACAACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCA-AGAA 63 Query 306 CGAAAGTTAGGGG 318 |||||||| |||| Sbjct 62 CGAAAGTTGGGGG 50 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 913453102848