Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Mentha_20longifolia_20[genbank_20GCA_5F001642375.1_202016-05-11]
190,876 sequences; 353,287,234 total letters
Query= AAMG01000278.1
Length=318
Score E
Sequences producing significant alignments: (Bits) Value
seq618 221 2e-55
seq153850 199 7e-49
seq117838 174 3e-41
>seq618
Length=12052
Score = 221 bits (244), Expect = 2e-55
Identities = 200/248 (81%), Gaps = 3/248 (1%)
Strand=Plus/Plus
Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCAT 130
|| |||||||||| ||||||||||| |||||||| |||| |||| | ||||||||||||
Sbjct 913 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGGATACATTAGCAT 972
Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190
|| |||| | |||||| | |||| ||||| ||||| | ||| || ||||||||
Sbjct 973 GGGATAACATTATAGGATTT-CGGTCCTATTACGTTGGCCTTCGGGATCGGAGTAATGAT 1031
Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250
||| ||||| || || ||| | ||||| || ||||||||||||||||||||||||||
Sbjct 1032 TAACAGGGACAGCCGTGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTAT 1091
Query 251 TGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAA 310
||||| ||| ||||||||||| || ||||| |||||||||||||||| ||||||||
Sbjct 1092 GAAAGACGAACAACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCA-AGAACGAAA 1150
Query 311 GTTAGGGG 318
||| ||||
Sbjct 1151 GTTGGGGG 1158
Score = 165 bits (182), Expect = 1e-38
Identities = 158/200 (79%), Gaps = 2/200 (1%)
Strand=Plus/Plus
Query 119 ATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGAC 178
|||||||||||||| ||| | |||||| | |||| ||||| ||||| | |||
Sbjct 9338 ATACATTAGCATGGGATAGCATTATAGGATTT-CGGTCCTATTACGTTGGCCTTCGGGAT 9396
Query 179 CGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAAT 238
|| ||||||||||| ||||| || || ||| | ||||| || ||||||||||||||
Sbjct 9397 CGGAGTAATGATTAACAGGGACAGCCGTGGGCATTTGTATTTCATAGTCAGAGGTGAAAT 9456
Query 239 TCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAAT 298
|||||||||||| || || ||| ||||||||||| || ||||| ||||||||||||||
Sbjct 9457 TCTTGGATTTATGAAAAACGAACAACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAAT 9516
Query 299 CAGTGAACGAAAGTTAGGGG 318
|| ||||||||||| ||||
Sbjct 9517 CA-AGAACGAAAGTTGGGGG 9535
>seq153850
Length=5434
Score = 199 bits (220), Expect = 7e-49
Identities = 199/249 (80%), Gaps = 7/249 (3%)
Strand=Plus/Minus
Query 72 CTTTTACTTTGAAAAAATTAGAGTGT-TCAAAGCAGGCCTTTGCTC-GAATACATTAGCA 129
|| |||||||||| ||||||||||| |||||||| |||| |||| | |||||||||||
Sbjct 420 CTGTTACTTTGAAGAAATTAGAGTGGCTCAAAGCAAGCCTACGCTCTGGATACATTAGCA 361
Query 130 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGA 189
||| |||| | |||||| | |||| ||||| ||||| | ||| || |||||||
Sbjct 360 TGGGATAACATTATAGGATTT-CGGTCCTATTACGTTGGCCTTCGGGATCGGAGTAATGA 302
Query 190 TTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTA 249
|||| ||||| | || ||| | ||||||| | |||| ||||||||||||||||||||
Sbjct 301 TTAACAGGGACAC-CGTGGGCATTCGTATTCA-TAGTCACAGGTGAAATTCTTGGATTTA 244
Query 250 TTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAA 309
| ||||| ||| ||||||||||| || ||||| |||||||||||||||| |||||||
Sbjct 243 TGAAAGAC-AACAACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCA-AGAACGAA 186
Query 310 AGTTAGGGG 318
|||| ||||
Sbjct 185 AGTTGGGGG 177
>seq117838
Length=963
Score = 174 bits (192), Expect = 3e-41
Identities = 200/253 (79%), Gaps = 12/253 (5%)
Strand=Plus/Minus
Query 72 CTTTTACTTTGAAAAAATTAGAG-TG-TTCAAAGCAGGCCTTTGCTC-GAATACATTAGC 128
|| |||||||||| ||||||||| || ||||||||| |||| |||| | ||||||||||
Sbjct 296 CTGTTACTTTGAAGAAATTAGAGCTGCTTCAAAGCAAGCCTACGCTCTGGATACATTAGC 237
Query 129 ATGGAATA-ATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAAT 187
|||| | | | | |||||| | |||| ||||| |||| ||| ||| || |||||
Sbjct 236 ATGGGAAACACATTATAGGATTT-CGGTCCTATTACGTTGCGTTCG-GGATCGGAGTAAT 179
Query 188 GATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATT 247
|||||| ||||| || || ||| | ||||||| | |||||||||||| ||||||||||
Sbjct 178 GATTAACAGGGACAGCCGTGGGCATTCGTATTCA-TAGTCAGAGGTGAA-TTCTTGGATT 121
Query 248 TATTGAAG-ACTAA-CTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAA 305
|| ||| || || | ||||||||||| || ||||| |||||||||||||||| |||
Sbjct 120 -ATGAAAGGACGAAACAACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCA-AGAA 63
Query 306 CGAAAGTTAGGGG 318
|||||||| ||||
Sbjct 62 CGAAAGTTGGGGG 50
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 913453102848
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |