Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Mentha_20longifolia_20[genbank_20GCA_5F001642375.1_202016-05-11]
190,876 sequences; 353,287,234 total letters
Query= AAMG01000304.1
Length=683
Score E
Sequences producing significant alignments: (Bits) Value
seq618 221 5e-55
seq113941 116 2e-23
>seq618
Length=12052
Score = 221 bits (244), Expect = 5e-55
Identities = 222/282 (79%), Gaps = 6/282 (2%)
Strand=Plus/Plus
Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGG-TGTCA 463
|| ||||||||| ||||||||||||||||||| |||| | ||||||| ||| | |
Sbjct 3241 CGACCCGTCTTGAAACACGGACCAAGGAGTCTGACATGTGTGCGAGTCAACGGGCTAGTA 3300
Query 464 AACCCGTGCG-CGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGG-TGCACCATCGA 521
||||||| | || || ||| ||| ||| | | ||| ||||| |||||| |||
Sbjct 3301 AACCCGTAAGGCGCAAGGAAGCTGACCGGCGC-GATCCCCCTCGAGGGGTGCACCGCCGA 3359
Query 522 CCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGAT 581
|||| | |||| | | || || || |||| ||||||| | || ||||||||||||||
Sbjct 3360 CCGACCTTGATCTTCTGAGAAGGGTTCGAGT--GAGCATACCCGTCGGGACCCGAAAGAT 3417
Query 582 GGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGT 641
|||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||| |
Sbjct 3418 GGTGAACTATGCCTGAGCGGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCCCGCAGCGAT 3477
Query 642 TCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683
||| ||||||||||| ||||| | ||||||||||||||||
Sbjct 3478 ACTGACGTGCAAATCGTTCGTCTGACTTGGGTATAGGGGCGA 3519
Score = 163 bits (180), Expect = 1e-37
Identities = 135/165 (82%), Gaps = 0/165 (0%)
Strand=Plus/Plus
Query 35 TCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGC 94
||| ||||||| |||||||||||||||||| | || ||| |||||||| | || || ||
Sbjct 2857 TCGGCGAGTCGGGTTGTTTGGGAATGCAGCCCCAATCGGGCGGTAAATTCCGTCCAAGGC 2916
Query 95 TAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTT 154
|||||| ||| |||||||||||||| ||||||| | || ||||||||||||| ||||
Sbjct 2917 TAAATACGGGCGAGAGACCGATAGCGAACAAGTACCGCGAGGGAAAGATGAAAAGGACTT 2976
Query 155 TGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199
|| ||||||||| ||| || | ||||||||| | |||||||||
Sbjct 2977 TGAAAAGAGAGTCAAAGAGTGCTTGAAATTGTCGGGAGGGAAGCG 3021
>seq113941
Length=1050
Score = 116 bits (128), Expect = 2e-23
Identities = 117/152 (77%), Gaps = 0/152 (0%)
Strand=Plus/Minus
Query 47 GTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCC 106
|||||||||||||||| | |||| |||| |||||||| | || || |||| |||| ||
Sbjct 577 GTTGTTTGGGAATGCAACGCTAAGTGGGTGGTAAATTCCATCCAAGGCTAGATATGAGCA 518
Query 107 AGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGT 166
|||||| |||||| | ||||| | | |||||||||||| |||||| |||||||||
Sbjct 517 AGAGACTGATAGCAAATAAGTACCGCAAGAGAAAGATGAAAATGACTTTGAAAAGAGAGT 458
Query 167 TAAAAAGCACGTGAAATTGTTGAAAGGGAAGC 198
|| | || | ||||||| | ||||||||
Sbjct 457 TATAGAGTGCTTGAAATTTCCAAGAGGGAAGC 426
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 2075905709800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |