Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Mentha_20longifolia_20[genbank_20GCA_5F001642375.1_202016-05-11]
190,876 sequences; 353,287,234 total letters
Query= AAMG01000538.1
Length=248
Score E
Sequences producing significant alignments: (Bits) Value
seq21829 147 3e-33
seq3962 141 1e-31
>seq21829
Length=24115
Score = 147 bits (162), Expect = 3e-33
Identities = 180/243 (74%), Gaps = 12/243 (5%)
Strand=Plus/Minus
Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65
||||||| ||||||||||| ||||| | ||||||||| ||||| ||| ||| | ||
Sbjct 21237 CCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCA-CTTAGCAGAGTCC 21179
Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125
|||||||||| |||||||||||| ||| || | | ||| | | | |||| |
Sbjct 21178 TGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTAA--TCAAAAGA 21121
Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185
| || || | ||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 21120 T--------AGGAGAG-CACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCT 21070
Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245
| || |||| | | | |||| |||||| |||||| || |||||||||||||| |
Sbjct 21069 TCGACATGGTTCTCTCAAGCGCCCTAGTATACTCTACTTGTTTACCTGTGTCGGTTTGGG 21010
Query 246 GTA 248
|||
Sbjct 21009 GTA 21007
>seq3962
Length=38492
Score = 141 bits (156), Expect = 1e-31
Identities = 177/243 (73%), Gaps = 20/243 (8%)
Strand=Plus/Minus
Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65
|||||| ||| ||||||||||||| || |||||| | ||||| | ||| || ||||
Sbjct 33892 CCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTAC-GACTTTGCGGAGACC 33834
Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125
||||||||| |||||||||||| || || |||||||| ||
Sbjct 33833 TGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCT------------- 33787
Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185
| || || || ||||||||||||||||||||||||||| |||||||||| |||||
Sbjct 33786 TTGTG----AGGAG--GCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCT 33733
Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245
|| | |||| | || | ||| ||||||||||||| |||||||||||||||| |
Sbjct 33732 TAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGTTTCGG 33673
Query 246 GTA 248
|||
Sbjct 33672 GTA 33670
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 693115977148
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |